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Illumina 450K quality controls with meffil

meffil snp ewas written 12 days ago by uxue33 • 20

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Recent Replies

A: What to think about when treating scRNA-Seq data as bulk RNA-Seq data by danvoronov • 10
I was wondering if it was possible to use one or more of the FASTQ files (if you have 10x genomic...
A: Making nice plots based on the different metrics from VCF file by pwwang • 0
Try this out: https://github.com/pwwang/vcfstats
C: RNA sequencing how to see expression value by mxlsherry1992 • 30
Hi, sorry for the unclear statement, I don't need to compare the expression value between A, B sp...
A: RNA sequencing how to see expression value by mxlsherry1992 • 30
Hi, sorry for the unclear statement, I don't need to compare the expression value between A, B sp...
C: Aligning short oligos containing Ns to a genome by archana.bioinfo87 • 170
Hi, If your file is not too big than you can try this command. Here your query sequence will act...
C: Aligning short oligos containing Ns to a genome by ATpoint ♦ 24k
Not sure about BLAST but most NGS aligners consider ambiguous (non-ATCG) characters as mismatches...
A: RNA sequencing how to see expression value by swbarnes2 ♦ 6.7k
I don't think comparing values from two different pipelines is going to yield anything meaningful...
A: Blast2Go annotation question by Mensur Dlakic • 1.7k
There are several reasons why a protein would have `uncharacterized`, `unknown` or `hypothetical`...
C: How to count and compare k-mer count vectors (and print the top ten highest cont by nihaldm169 • 0
The speed doesn't matter, no. And I don't know how big the sequences are... We got sent two files...
C: Finding the barcodes (3' adapters) of multiplexed samples by rosgreg21703 • 0
Yes exactly. What's more, I wanted to solve this problem from scratch using Python, that's why at...
C: Comparing values of a column if it falls between values of two columns of a diff by zx8754 ♦ 8.3k
Feel free to ask a new question with example data that is **more** representative to your real da...
C: Infer Experiment strand information interpretation by dnzkursun • 0
Then, it is fr-firststrand. Thank you for the link.

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