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written 4.7 years ago by
sosal • 10
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4.7 years ago by
Pierre Lindenbaum ♦ 133k
Recent Votes
- C: Message Error : Blastdbcmd
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Recent Replies
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C: Creating a non-coding RNA index for STAR by
GenoMax ♦ 95k
You should use the correct tool for the job at hand. That said what is the rest of the data suppo...
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C: How to use samtools faidx by
GenoMax ♦ 95k
> order to extract and align the hits from my blast. Align to a reference? To each other like...
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C: Creating a non-coding RNA index for STAR by
plberry • 10
Thanks for the tip on the BBMap suite, that looks very promising.
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C: Creating a non-coding RNA index for STAR by
plberry • 10
I wanted to use STAR because that's what I'm going to be using for more downstream analysis of re...
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A: Creating a non-coding RNA index for STAR by
GenoMax ♦ 95k
> My end goal is to remove all reads in the sequencing file that map to > ncRNAs In that c...
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C: Creating a non-coding RNA index for STAR by
plberry • 10
The FASTA files do not have any chromosomes on them, just `>ENST00000473358.1|ENSG00000243485....
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C: Creating a non-coding RNA index for STAR by
GenoMax ♦ 95k
`STAR` should have no advantage over other aligners for ncRNA. You may want to try a simpler alig...
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C: PEPATAC error: ConnectionResetError: [Errno 104] Connection reset by peer by
karl.stamm ♦ 3.9k
That's a network connection problem. Talk to your computer administrators or network engineers. ...
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C: Creating a non-coding RNA index for STAR by
Pierre Lindenbaum ♦ 133k
> Most likely cause is the difference in chromosome naming between GTF and FASTA file. did y...
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C: How to use samtools faidx by
Pierre Lindenbaum ♦ 133k
> then use the samtools faidx command in order to extract and align the hits from my blast th...
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C: Message Error : Blastdbcmd by
florian.grosmaire • 0
Thank you very much !
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C: When a duplicated BUSCOs value is too high? Reasons and how to improve it by
resug • 0
Thanks! It's good to hear this. Are not BUSCOs expected to be single copy?
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