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<prev • 162 results • page 1 of 6 • next >
3
votes
1
answer
92
views
1
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Ensembl rest getting exon only Sequence.
ensembl sequence exon written 7 days ago by Ali.B • 0
11
votes
0
answers
195
views
5 follow
0
answers
How do I get the read counts for a specific exon
bam exon written 8 weeks ago by b10hazard • 20 • updated 8 weeks ago by Ram ♦ 15k
2
votes
2
answers
1.1k
views
2
answers
How to get exon number from position from script?
rest api exon written 3.0 years ago by sacha • 1.2k • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
2.3k
views
1
answer
Creation Of Exoncountset In Dexseq
ensembl exon written 4.9 years ago by alittleboy • 210 • updated 4 months ago by Biostar ♦♦ 20
4
votes
2
answers
231
views
2
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The exon of a variant
vcf exon written 4 months ago by Dayna • 10 • updated 4 months ago by JC ♦ 6.5k
0
votes
0
answers
209
views
0
answers
Mapping from Human Exon 1.0 ST probeset IDs to Ensembl exon IDs
exon probeset id mapping human exon 1.0 st written 4 months ago by sevenless • 0
4
votes
1
answer
376
views
1
answer
Bulk download introns, exons, and UTR regions from Ensembl for gene prediction training set
annotation sequence intron exon ensembl written 4 months ago by Katherine Huang • 0 • updated 4 months ago by Brian Gudenas • 90
1
vote
1
answer
692
views
1
answer
de novo exon-exon junction identification tool from transcriptome assembly
genome assembly next-gen rna-seq exon written 23 months ago by hamzakhanvit • 10 • updated 4 months ago by mbens • 100
0
votes
0
answers
256
views
0
answers
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
cds exon rna-seq written 6 months ago by zoukai3412085 • 0
0
votes
1
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1.1k
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1
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Binning Exon And Plotting Read Densities (Bed Regions) With In And Around Binned Exons
exon written 6.8 years ago by Repineme • 110 • updated 6 months ago by kashifalikhan007 • 40
0
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0
answers
341
views
0
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strand information issue for overlapping exons
alignment rna-seq exon written 6 months ago by prasundutta87 • 170
32
votes
3
answers
15k
views
9 follow
3
answers
Exon Coordinates Of Hg19 Genome Download
exon coordinates human hg written 7.2 years ago by Neeraj • 150 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
433
views
1
answer
exon level quantification using htseq count
htseq-count exon quantifications rna-seq written 8 months ago by komal.rathi • 3.2k • updated 8 months ago by Devon Ryan ♦ 79k
2
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0
answers
442
views
0
answers
How to interpret DEXseq results in therms of significance
dexseq exon rna-seq written 8 months ago by Lila M • 370
0
votes
0
answers
548
views
0
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how to use DEXSeq with raw exon count matrix downloaded from TCGA
dexseq R exon rna-seq written 9 months ago by ren.yingxue • 0 • updated 8 months ago by Biostar ♦♦ 20
11
votes
2
answers
521
views
2
answers
If i am interested in a transcription factor, why would i focus on coding and non coding SNPs?
enhancer promoter snp exon transcription written 9 months ago by mesencephalon • 0 • updated 9 months ago by Emily_Ensembl ♦ 14k
1
vote
0
answers
406
views
0
answers
How to access up-to-date exon data from GTEx project
rnaseq exon gtex isoform tissue-specific written 9 months ago by vlrieg • 10
1
vote
1
answer
435
views
1
answer
Obtaining .bed list of exons of chr17
bed exon written 11 months ago by marghe08 • 0 • updated 9 months ago by Alex Reynolds ♦ 23k
4
votes
1
answer
583
views
1
answer
how to calculate the coverage over a specif coordinate
exon coverage rna-seq written 9 months ago by Lila M • 370
0
votes
0
answers
462
views
0
answers
diffSplice: Error in exon.genes[o, , drop = FALSE] : incorrect number of dimensions
exon diffsplice edger voom written 9 months ago by sarin.heikki.v • 10 • updated 9 months ago by WouterDeCoster ♦ 28k
0
votes
1
answer
376
views
1
answer
SNPeff: Find SNPs that are close to exons?
exon snp written 10 months ago by Marvin • 90 • updated 10 months ago by Biostar ♦♦ 20
0
votes
0
answers
363
views
0
answers
List of Exons per gene bad covered
python exon coverage written 10 months ago by windsur • 0
2
votes
1
answer
427
views
1
answer
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 11 months ago by Marvin • 90 • updated 11 months ago by Devon Ryan ♦ 79k
6
votes
2
answers
1.9k
views
2
answers
Confused with Ensembl Exon ID, How to understand them?
exon id ensembl exon written 3.0 years ago by Yu • 100 • updated 11 months ago by gandrescabrera • 80
1
vote
2
answers
798
views
2
answers
differential exon usage
exon rna-seq bam written 12 months ago by Lila M • 370 • updated 11 months ago by kristoffer.vittingseerup • 470
1
vote
1
answer
603
views
1
answer
how to calculate coverage in bam file over a specific bed file
bedtools multicov coverage exon rna-seq written 11 months ago by Lila M • 370 • updated 11 months ago by Devon Ryan ♦ 79k
3
votes
1
answer
588
views
1
answer
why there are different ensembl exon IDs for exactly same chromosome coordinates
gene bioinformatics next-gen exon ensembl written 12 months ago by sandybioteck • 20 • updated 12 months ago by theobroma22 • 1.1k
0
votes
0
answers
462
views
0
answers
Converting regions based on gene start , body , end site ,... to promoter ,exon, intron
gene sites promoter enhancer exon written 12 months ago by niutster • 60
0
votes
0
answers
441
views
0
answers
How to map exon data to CDS from one reference species?
exome cds exon protein mapping written 13 months ago by balasink • 10 • updated 12 months ago by Biostar ♦♦ 20
2
votes
1
answer
533
views
1
answer
exon quantification for tissue samples
count exon rna-seq splice written 15 months ago by Varun Gupta • 990 • updated 15 months ago by EagleEye • 5.1k
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