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<prev • 198 results • page 1 of 7 • next >
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how to use DEXSeq with raw exon count matrix downloaded from TCGA
dexseq R exon rna-seq written 3.2 years ago by ren.yingxue • 0 • updated 12 hours ago by Biostar ♦♦ 20
3
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1
answer
177
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1
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Coordinates for genomic features?
gene utr promoter exon intron written 7 weeks ago by Ankit • 140
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1
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142
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1
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Count the number of exons in a trasncript
ncbi exon transcript eutils written 9 weeks ago by speycast • 0 • updated 9 weeks ago by genomax ♦ 91k
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1
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395
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1
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Canonical transcript exon bounderieis
canonical exon written 19 months ago by fabbri.marco • 0 • updated 12 weeks ago by kdauria • 30
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117
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Exon quantification on isoform level
tcga rna-seq exon written 4 months ago by agustin.guardiola • 0
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2
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147
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2
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Retrieve exon ranges from E-utils
ncbi etuils exon genbank written 5 months ago by speycast • 0 • updated 5 months ago by genomax ♦ 91k
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1
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219
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1
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Extract EXON fasta from a GFF3 annotation and reference genome
genome fasta gff exon gff2fasta written 6 months ago by marcelolaia • 10
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1
answer
201
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1
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determine exon number from variant genomic coordinates
exome exon variant coordinates human written 5 months ago by cocchi.e89 • 110 • updated 5 months ago by rbagnall • 1.7k
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145
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VCF rare variants and exon
vcf exon rare variants written 6 months ago by raalsuwaidi • 0
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2
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252
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2
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Non-overlapping exon set for exon counting (Illumina RNA-seq)
gtf exon subread featurecounts rna-seq written 7 months ago by andreismolnikov00 • 0 • updated 7 months ago by i.sudbery ♦ 9.4k
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328
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6 follow
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Quick way to annotate a target exome BED file with gene name information
annotate bed exon gene written 8 months ago by lakhujanivijay ♦ 5.3k
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1
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230
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1
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Tool to design Q-PCR primers with exon skipping?
splicing exon primer written 9 months ago by gabriel.monteiro233 • 0
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1
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291
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1
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How to identify all exons and cds in gene?
gene cds exon dna written 9 months ago by isoBA • 0 • updated 9 months ago by Pierre Lindenbaum ♦ 131k
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1
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290
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1
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Get exon start/stop positions in gene using Ensembl REST API
gene ensembl exon rest api written 10 months ago by solisruiz.j • 0 • updated 10 months ago by Emily_Ensembl ♦ 21k
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5 follow
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Intron and exon coordinates of all genes from Hg19
gene cordinates intron exon written 10 months ago by yliueagle • 220 • updated 10 months ago by vkkodali • 2.1k
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1
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232
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1
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Aggregating coverage values exon wise
ngs exon coverage aggregation written 11 months ago by Gene • 20 • updated 11 months ago by Kevin Blighe ♦ 66k
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1
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1.4k
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1
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GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon written 3.3 years ago by Marvin • 160 • updated 11 months ago by Biostar ♦♦ 20
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233
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Defining exons, UTRs, introns and intergenic regions using "overlap" in Ensemble REST API
genomic coordinates exon ensemble rest api intron written 11 months ago by Maria • 10
10
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2
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328
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5 follow
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Remove overlap between Exon and UTR boundaries
exon utr rna-seq written 13 months ago by waqaskhokhar999 • 90 • updated 12 months ago by JC ♦ 11k
2
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277
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Extracting gene symbols from gene assignments in exon array data
gene symbol exon microarray gene assignment written 14 months ago by Kim • 10 • updated 14 months ago by Pierre Lindenbaum ♦ 131k
2
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732
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How to retrieve metadata from the manifest data and UUID from genomic data commons (GDC)
tcga next-gen alignment mutations exon written 15 months ago by a.james • 210
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1
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5 follow
1
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diffSplice: Error in exon.genes[o, , drop = FALSE] : incorrect number of dimensions
exon diffsplice edger voom written 3.2 years ago by sarin.heikki.v • 10 • updated 16 months ago by Gordon Smyth • 2.0k
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4
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11k
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13 follow
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 7.4 years ago by lwc628 • 220 • updated 16 months ago by m13113153781 • 0
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1
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758
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 17 months ago by jordan.mandel • 0 • updated 17 months ago by h.mon ♦ 31k
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526
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Extract multi exonic genes from gtf files
gtf exon rna-seq written 17 months ago by waqaskhokhar999 • 90
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1
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364
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1
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Variants in Exon or Intron
exon variant intron written 17 months ago by zakkaknadine • 10 • updated 17 months ago by shawn.w.foley • 1.2k
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339
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Complete exon coordinate for ref seq gene
exon ref-seq written 17 months ago by fabbri.marco • 0
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How to use the data from Affymetrix Human Exon 1.0 ST Array for microarray gene expression analysis?
tcga microarray exon written 4.5 years ago by fernandov • 10 • updated 18 months ago by ATpoint ♦ 40k
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Altanalyze software error
software error exon written 18 months ago by kubracelikbas4 • 0
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322
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0
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Pipeline for extracting gene from multiple genomes for use in HyPhy selection analyses?
hyphy genome alignment positive selection exon written 19 months ago by PollardMD • 0
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