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FastaAlternateReferenceMaker creates different size fasta.

fastaalternatereferencemaker snp written 6 months ago by zaibunnisa.t • 0 • updated 6 months ago by WouterDeCoster ♦ 30k

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GATK FastaAlternateReferenceMaker giving error

gatk fastaalternatereferencemaker written 21 months ago by PAn • 20

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rename fasta headers in FastaAlternateReferenceMaker output

fasta bed header fastaalternatereferencemaker gatk written 24 months ago by mosquitoes • 0

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1.4k

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Fasta Alternate Reference Maker extracted fasta files are same as reference

gatk fastaalternatereferencemaker myposts written 2.9 years ago by nuketbilgen • 30 • updated 2.3 years ago by dsosa • 0

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1.9k

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Error when trying to fix the contigs order in the reference and vcf for FastaAlternateReferenceMaker

gatk fastaalternatereferencemaker rna-seq written 2.9 years ago by tiago211287 • 990

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https://github.com/samuelwb/cancer-evolution/blob/master/RnaSeqSignaturesSsGsea/ssGSEA.r
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i can confirm that after upgrading to the latest bcftools version, this works. Thanks!
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