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85
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1
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15k
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73 follow
1
answer
Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 23 months ago by ATpoint ♦ 34k
13
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2
answers
3.5k
views
13 follow
2
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Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 3.4 years ago by Shicheng Guo • 8.2k • updated 24 days ago by clay.l.mcleod • 20
5
votes
1
answer
423
views
6 follow
1
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Can fastq-dump be run without an internet connection?
sequence read archive sra-toolkit fastq-dump written 10 weeks ago by will.townes • 40 • updated 9 weeks ago by wm • 440
0
votes
1
answer
1.4k
views
1
answer
How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 22 months ago by Cy • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
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1.9k
views
5 follow
1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 17 months ago by beneopp • 0 • updated 5 months ago by dgpiury • 0
0
votes
0
answers
200
views
0
answers
Mapping multiple SRR ID from same experiment
alignment srrid gsmid fasterq-dump fastq-dump written 7 months ago by singlecell • 0
1
vote
1
answer
731
views
1
answer
Checking integrity of SRA downloaded fastq files
fastq-dump sequence sra toolkit fasterq-dump written 7 months ago by flyingbebegurl • 0 • updated 7 months ago by genomax ♦ 83k
2
votes
0
answers
309
views
0
answers
scRNA-seq: Kallisto processing of bioproject data (fastq-dump)
scrna-seq bioproject fastq-dump kallisto rna-seq written 8 months ago by bsmith030465 • 150
8
votes
1
answer
1.7k
views
1
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why fastq-dump doesn`t work?
sra prefetch fastq-dump written 16 months ago by star • 230 • updated 16 months ago by ATpoint ♦ 34k
0
votes
0
answers
621
views
0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 18 months ago by rrbutleriii • 70 • updated 16 months ago by Biostar ♦♦ 20
0
votes
0
answers
1.4k
views
0
answers
Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 17 months ago by V • 230
4
votes
1
answer
2.2k
views
1
answer
how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 19 months ago by jaqx008 • 70 • updated 19 months ago by piyushjo • 470
3
votes
2
answers
725
views
5 follow
2
answers
how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 19 months ago by fanglujing • 30 • updated 19 months ago by thomaskuilman • 780
3
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1
answer
8.6k
views
1
answer
fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 4.3 years ago by Shicheng Guo • 8.2k • updated 20 months ago by RamRS ♦ 27k
5
votes
1
answer
1.4k
views
1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 2.0 years ago by Mitra • 0 • updated 2.0 years ago by ATpoint ♦ 34k
1
vote
1
answer
2.4k
views
1
answer
fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 2.2 years ago by oars • 160
4
votes
1
answer
1.4k
views
1
answer
Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 2.3 years ago by xarielle • 0 • updated 2.3 years ago by Istvan Albert ♦♦ 84k
1
vote
3
answers
1.5k
views
5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 2.4 years ago by majeedaasim • 40 • updated 2.4 years ago by jomo018 • 570
2
votes
1
answer
692
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1
answer
Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 2.5 years ago by dec986 • 210
2
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2
answers
2.5k
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2
answers
How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 2.8 years ago by bioinform • 20 • updated 2.8 years ago by ole.tange • 3.7k
4
votes
1
answer
1.1k
views
1
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Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 3.0 years ago by biolab • 1.2k • updated 3.0 years ago by Devon Ryan ♦ 95k
1
vote
0
answers
2.2k
views
0
answers
Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 3.1 years ago by RNAeye • 60
3
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0
answers
1.2k
views
0
answers
How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 3.1 years ago by flight029000 • 0
1
vote
1
answer
1.2k
views
1
answer
sra to fastq conversion - paired-end file won't split
sra fastq fastq-dump sratoolkit written 3.4 years ago by rioualen • 390
8
votes
2
answers
5.5k
views
5 follow
2
answers
fastq dump error
sra sra toolkit fastq-dump written 3.5 years ago by Satyajeet Khare • 1.5k • updated 3.5 years ago by piet • 1.7k
2
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0
answers
2.2k
views
0
answers
SRA toolkit internet settings
sra toolkit fastq-dump rna-seq sequencing written 3.8 years ago by BCArg • 60
2
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0
answers
1.2k
views
0
answers
fastq-dump error: transfer unknown
sra next-gen fastq-dump written 3.8 years ago by mufernando • 10
5
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3
answers
1.7k
views
3
answers
Problem while downloading RNAseq data from NCBI via command line
sra toolkit fastq-dump rna-seq written 3.8 years ago by BCArg • 60 • updated 3.8 years ago by microfuge • 1.6k
2
votes
2
answers
1.6k
views
2
answers
help with fastq-dump
sratool fastq-dump written 4.0 years ago by tsai.141 • 0
17
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2
answers
4.0k
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2
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What is the difference between --split-files and --split-3 when using fastq-dump?
paired end reads fastq-dump rna-seq written 4.1 years ago by elenajmichel • 60 • updated 4.1 years ago by genomax ♦ 83k
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