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11
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1
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1.1k
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10 follow
1
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Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 23 months ago by Shicheng Guo • 7.3k • updated 8 hours ago by ATpoint ♦ 11k
0
votes
1
answer
118
views
1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 3 days ago by beneopp • 0 • updated 10 hours ago by Phil Ewels • 150
16
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0
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1.2k
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14 follow
0
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Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 5 months ago by ATpoint ♦ 11k
0
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0
answers
116
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0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 28 days ago by rrbutleriii • 10
3
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1
answer
357
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1
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how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 8 weeks ago by jaqx008 • 40 • updated 8 weeks ago by piyushjo • 80
3
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2
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157
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5 follow
2
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how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 8 weeks ago by fanglujing • 30 • updated 8 weeks ago by t.kuilman • 710
3
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1
answer
6.6k
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1
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fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 2.8 years ago by Shicheng Guo • 7.3k • updated 12 weeks ago by RamRS ♦ 19k
0
votes
1
answer
406
views
1
answer
How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 5 months ago by Cy • 0 • updated 5 months ago by ATpoint ♦ 11k
5
votes
1
answer
437
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1
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Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 6 months ago by Mitra • 0 • updated 6 months ago by ATpoint ♦ 11k
1
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1
answer
1.1k
views
1
answer
fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 9 months ago by oars • 150
4
votes
1
answer
546
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1
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Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 10 months ago by xarielle • 0 • updated 10 months ago by Istvan Albert ♦♦ 78k
1
vote
3
answers
705
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5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 11 months ago by majeedaasim • 20 • updated 11 months ago by jomo018 • 450
2
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1
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340
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1
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Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 12 months ago by dec986 • 130
2
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2
answers
1.3k
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2
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How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 16 months ago by bioinform • 20 • updated 16 months ago by ole.tange • 3.3k
4
votes
1
answer
616
views
1
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Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 18 months ago by biolab • 1.1k • updated 18 months ago by Devon Ryan ♦ 86k
1
vote
0
answers
1.3k
views
0
answers
Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 19 months ago by RNAeye • 60
3
votes
0
answers
698
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0
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How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 20 months ago by flight029000 • 0
1
vote
1
answer
696
views
1
answer
sra to fastq conversion - paired-end file won't split
sra fastq fastq-dump sratoolkit written 24 months ago by rioualen • 320
8
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2
answers
3.2k
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5 follow
2
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fastq dump error
sra sra toolkit fastq-dump written 2.0 years ago by Satyajeet Khare • 1.3k • updated 2.0 years ago by piet • 1.6k
2
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0
answers
1.4k
views
0
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SRA toolkit internet settings
sra toolkit fastq-dump rna-seq sequencing written 2.4 years ago by BCArg • 60
2
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0
answers
877
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0
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fastq-dump error: transfer unknown
sra next-gen fastq-dump written 2.4 years ago by mufernando • 10
5
votes
3
answers
1.1k
views
3
answers
Problem while downloading RNAseq data from NCBI via command line
sra toolkit fastq-dump rna-seq written 2.4 years ago by BCArg • 60 • updated 2.4 years ago by microfuge • 950
2
votes
2
answers
1.1k
views
2
answers
help with fastq-dump
sratool fastq-dump written 2.5 years ago by tsai.141 • 0
15
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2
answers
2.5k
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2
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What is the difference between --split-files and --split-3 when using fastq-dump?
paired end reads fastq-dump rna-seq written 2.7 years ago by elenajmichel • 40 • updated 2.7 years ago by genomax ♦ 59k
6
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0
answers
1.5k
views
0
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Tutorial: How to extract fastq files from SRA data that contains both paired and unpaired reads
sra tutorial fastq-dump written 2.7 years ago by t.kuilman • 710 • updated 2.7 years ago by Istvan Albert ♦♦ 78k
15
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4
answers
1.4k
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4
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Forum: Fastest way from SRA to fastq PE reads
sra fastq fastq-dump forum vdb-dump rna-seq written 2.8 years ago by Avi • 60
5
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1
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3.2k
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1
answer
SRAtoolkit error during fastq-dump
software error sratoolkit fastq-dump chip-seq written 2.8 years ago by dally • 160 • updated 2.8 years ago by piet • 1.6k
0
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1
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1.3k
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1
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fastq file from fast-dump -split-3 contains no quality score info
tophat open fastq-dump written 3.3 years ago by colonppg • 90
12
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3
answers
6.3k
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3
answers
fastq-dump split-3 output
sra fastq-dump written 3.3 years ago by colonppg • 90
1
vote
1
answer
3.0k
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1
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fastq-dump stream to named pipe (fifo) to Trinity
next-gen fastq-dump rna-seq sequencing written 4.0 years ago by glarue • 20 • updated 3.3 years ago by Biostar ♦♦ 20
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