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2
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1
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175
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1
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How to retrieve an individual read with fastq-dump
sra fastq-dump rna-seq written 8 weeks ago by wmorgan485 • 0
1
vote
1
answer
171
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1
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fastq-dump returns I1 and R1 files instead of R1 and R2
reads fastq-dump question written 10 weeks ago by requiem_data • 0
1
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1
answer
223
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1
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Problems with fastq-dump generating a single fastq file
fastq fastq-dump pair-ended written 11 weeks ago by pomodoro_sinensis • 0 • updated 11 weeks ago by GenoMax ♦ 94k
4
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1
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1.5k
views
1
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SRA Toolkit: using fastq-dump vs fasterq-dump - discrepancies in output?
software error sratools fastq-dump fasterq-dump written 4 months ago by Hamish • 30
100
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2
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22k
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82 follow
2
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Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 2.5 years ago by ATpoint ♦ 44k • updated 5 months ago by Brunox13 • 30
6
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1
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322
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1
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convert SRA to fastq
fastq sra toolkit fastq-dump written 5 months ago by mo.ghasemi717 • 10 • updated 5 months ago by dariober ♦ 11k
3
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2
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1.8k
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6 follow
2
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Checking integrity of SRA downloaded fastq files
fastq-dump sequence sra toolkit fasterq-dump written 15 months ago by flyingbebegurl • 0 • updated 5 months ago by simplitia • 40
1
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0
answers
433
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0
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Fastq-dump timeout exhausted error
sratoolkit fastq-dump rna-seq written 6 months ago by smrutimayipanda • 10
0
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0
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251
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0
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Error downloading streams from SRA-ncbi when running fastq-dump
ncbi sra fastq-dump rna-seq written 7 months ago by Sam_ • 0
13
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2
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4.7k
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13 follow
2
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Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 4.0 years ago by Shicheng Guo • 8.5k • updated 8 months ago by clay.l.mcleod • 20
5
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1
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1.4k
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6 follow
1
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Can fastq-dump be run without an internet connection?
sequence read archive sra-toolkit fastq-dump written 10 months ago by will.townes • 50 • updated 10 months ago by wm • 490
0
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1
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1.8k
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1
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How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 2.5 years ago by Cy • 0 • updated 11 months ago by Biostar ♦♦ 20
1
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1
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3.0k
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5 follow
1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 2.1 years ago by beneopp • 0 • updated 13 months ago by dgpiury • 0
0
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0
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420
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0
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Mapping multiple SRR ID from same experiment
alignment srrid gsmid fasterq-dump fastq-dump written 15 months ago by singlecell • 0
2
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0
answers
554
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0
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scRNA-seq: Kallisto processing of bioproject data (fastq-dump)
scrna-seq bioproject fastq-dump kallisto rna-seq written 16 months ago by bsmith030465 • 150
8
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1
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2.8k
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1
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why fastq-dump doesn`t work?
sra prefetch fastq-dump written 23 months ago by star • 270 • updated 23 months ago by ATpoint ♦ 44k
0
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0
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835
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0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 2.2 years ago by rrbutleriii • 80 • updated 2.0 years ago by Biostar ♦♦ 20
0
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0
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2.2k
views
0
answers
Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 2.1 years ago by V • 230
4
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1
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3.0k
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1
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how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 2.3 years ago by jaqx008 • 70 • updated 2.3 years ago by piyushjo • 550
5
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2
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1.2k
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5 follow
2
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how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 2.3 years ago by fanglujing • 40 • updated 2.3 years ago by thomaskuilman • 800
3
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1
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9.5k
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1
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fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 4.9 years ago by Shicheng Guo • 8.5k • updated 2.3 years ago by _r_am ♦ 32k
5
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1
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1.8k
views
1
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Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 2.7 years ago by Mitra • 0 • updated 2.7 years ago by ATpoint ♦ 44k
1
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1
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2.8k
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1
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fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 2.9 years ago by oars • 160
4
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1
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1.8k
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1
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Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 3.0 years ago by xarielle • 0 • updated 3.0 years ago by Istvan Albert ♦♦ 86k
1
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3
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1.8k
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5 follow
3
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problem in fastq-dump of SRA file
sra fastq-dump written 3.1 years ago by majeedaasim • 50 • updated 3.1 years ago by jomo018 • 610
2
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1
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860
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1
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Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 3.1 years ago by dec986 • 240
2
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2
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3.0k
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2
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How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 3.5 years ago by bioinform • 20 • updated 3.5 years ago by ole.tange • 3.9k
4
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1
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1.3k
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1
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Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 3.6 years ago by biolab • 1.2k • updated 3.6 years ago by Devon Ryan ♦ 98k
1
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0
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2.5k
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0
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Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 3.7 years ago by RNAeye • 60
3
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0
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1.3k
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0
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How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 3.8 years ago by flight029000 • 0
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