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8
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1
answer
246
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1
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why fastq-dump doesn`t work?
sra prefetch fastq-dump written 20 days ago by star • 120 • updated 20 days ago by ATpoint ♦ 13k
19
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0
answers
2.0k
views
20 follow
0
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Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 7 months ago by ATpoint ♦ 13k
0
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0
answers
238
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0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 3 months ago by rrbutleriii • 50 • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
167
views
0
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Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 8 weeks ago by V • 100
11
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1
answer
1.4k
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10 follow
1
answer
Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 2.1 years ago by Shicheng Guo • 7.4k • updated 10 weeks ago by ATpoint ♦ 13k
0
votes
1
answer
233
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1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 10 weeks ago by beneopp • 0 • updated 10 weeks ago by Phil Ewels • 150
3
votes
1
answer
542
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1
answer
how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 4 months ago by jaqx008 • 40 • updated 4 months ago by piyushjo • 110
3
votes
2
answers
228
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5 follow
2
answers
how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 4 months ago by fanglujing • 30 • updated 4 months ago by t.kuilman • 720
3
votes
1
answer
6.8k
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1
answer
fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 3.0 years ago by Shicheng Guo • 7.4k • updated 5 months ago by RamRS ♦ 20k
0
votes
1
answer
526
views
1
answer
How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 7 months ago by Cy • 0 • updated 7 months ago by ATpoint ♦ 13k
5
votes
1
answer
565
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1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 9 months ago by Mitra • 0 • updated 9 months ago by ATpoint ♦ 13k
1
vote
1
answer
1.3k
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1
answer
fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 11 months ago by oars • 150
4
votes
1
answer
684
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1
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Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 12 months ago by xarielle • 0 • updated 12 months ago by Istvan Albert ♦♦ 79k
1
vote
3
answers
773
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5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 13 months ago by majeedaasim • 30 • updated 13 months ago by jomo018 • 470
2
votes
1
answer
378
views
1
answer
Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 14 months ago by dec986 • 150
2
votes
2
answers
1.5k
views
2
answers
How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 19 months ago by bioinform • 20 • updated 19 months ago by ole.tange • 3.3k
4
votes
1
answer
678
views
1
answer
Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 20 months ago by biolab • 1.1k • updated 20 months ago by Devon Ryan ♦ 88k
1
vote
0
answers
1.5k
views
0
answers
Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 21 months ago by RNAeye • 60
3
votes
0
answers
755
views
0
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How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 22 months ago by flight029000 • 0
1
vote
1
answer
771
views
1
answer
sra to fastq conversion - paired-end file won't split
sra fastq fastq-dump sratoolkit written 2.2 years ago by rioualen • 320
8
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2
answers
3.5k
views
5 follow
2
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fastq dump error
sra sra toolkit fastq-dump written 2.2 years ago by Satyajeet Khare • 1.3k • updated 2.2 years ago by piet • 1.6k
2
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0
answers
1.5k
views
0
answers
SRA toolkit internet settings
sra toolkit fastq-dump rna-seq sequencing written 2.5 years ago by BCArg • 60
2
votes
0
answers
926
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0
answers
fastq-dump error: transfer unknown
sra next-gen fastq-dump written 2.5 years ago by mufernando • 10
5
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3
answers
1.2k
views
3
answers
Problem while downloading RNAseq data from NCBI via command line
sra toolkit fastq-dump rna-seq written 2.6 years ago by BCArg • 60 • updated 2.6 years ago by microfuge • 980
2
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2
answers
1.1k
views
2
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help with fastq-dump
sratool fastq-dump written 2.7 years ago by tsai.141 • 0
17
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2
answers
2.6k
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2
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What is the difference between --split-files and --split-3 when using fastq-dump?
paired end reads fastq-dump rna-seq written 2.9 years ago by elenajmichel • 50 • updated 2.9 years ago by genomax ♦ 62k
6
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0
answers
1.6k
views
0
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Tutorial: How to extract fastq files from SRA data that contains both paired and unpaired reads
sra tutorial fastq-dump written 2.9 years ago by t.kuilman • 720 • updated 2.9 years ago by Istvan Albert ♦♦ 79k
15
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4
answers
1.5k
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4
answers
Forum: Fastest way from SRA to fastq PE reads
sra fastq fastq-dump forum vdb-dump rna-seq written 3.0 years ago by Avi • 70
5
votes
1
answer
3.4k
views
1
answer
SRAtoolkit error during fastq-dump
software error sratoolkit fastq-dump chip-seq written 3.0 years ago by dally • 170 • updated 3.0 years ago by piet • 1.6k
0
votes
1
answer
1.3k
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1
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fastq file from fast-dump -split-3 contains no quality score info
tophat open fastq-dump written 3.5 years ago by colonppg • 90
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