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3
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1
answer
6.0k
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1
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fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 2.6 years ago by Shicheng Guo • 6.5k • updated 9 days ago by RamRS ♦ 17k
13
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0
answers
693
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10 follow
0
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Tutorial: Fast download of FASTQ files and metadata from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 11 weeks ago by ATpoint ♦ 7.5k
0
votes
1
answer
247
views
1
answer
How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 10 weeks ago by Cy • 0 • updated 10 weeks ago by ATpoint ♦ 7.5k
5
votes
1
answer
284
views
1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 4 months ago by Mitra • 0 • updated 4 months ago by ATpoint ♦ 7.5k
1
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1
answer
885
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1
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fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 6 months ago by oars • 150
4
votes
1
answer
424
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1
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Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 7 months ago by xarielle • 0 • updated 7 months ago by Istvan Albert ♦♦ 77k
1
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3
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596
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5 follow
3
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problem in fastq-dump of SRA file
sra fastq-dump written 8 months ago by majeedaasim • 20 • updated 8 months ago by jomo018 • 360
2
votes
1
answer
283
views
1
answer
Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 9 months ago by dec986 • 110
2
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2
answers
1.1k
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2
answers
How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 14 months ago by bioinform • 20 • updated 14 months ago by ole.tange • 3.2k
4
votes
1
answer
540
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1
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Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 15 months ago by biolab • 1.0k • updated 15 months ago by Devon Ryan ♦ 84k
1
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0
answers
1.1k
views
0
answers
Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 16 months ago by RNAeye • 50
3
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0
answers
635
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0
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How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 17 months ago by flight029000 • 0
5
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0
answers
940
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6 follow
0
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Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 20 months ago by Shicheng Guo • 6.5k
1
vote
1
answer
630
views
1
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sra to fastq conversion - paired-end file won't split
sra fastq fastq-dump sratoolkit written 21 months ago by rioualen • 280
8
votes
2
answers
2.9k
views
5 follow
2
answers
fastq dump error
sra sra toolkit fastq-dump written 21 months ago by Satyajeet Khare • 1.3k • updated 21 months ago by piet • 1.5k
2
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0
answers
1.3k
views
0
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SRA toolkit internet settings
sra toolkit fastq-dump rna-seq sequencing written 2.1 years ago by BCArg • 50
2
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0
answers
813
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0
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fastq-dump error: transfer unknown
sra next-gen fastq-dump written 2.1 years ago by mufernando • 10
5
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3
answers
1.0k
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3
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Problem while downloading RNAseq data from NCBI via command line
sra toolkit fastq-dump rna-seq written 2.1 years ago by BCArg • 50 • updated 2.1 years ago by microfuge • 930
2
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2
answers
1.0k
views
2
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help with fastq-dump
sratool fastq-dump written 2.3 years ago by tsai.141 • 0
13
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2
answers
2.2k
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2
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What is the difference between --split-files and --split-3 when using fastq-dump?
paired end reads fastq-dump rna-seq written 2.4 years ago by elenajmichel • 30 • updated 2.4 years ago by genomax ♦ 55k
6
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0
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1.4k
views
0
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Tutorial: How to extract fastq files from SRA data that contains both paired and unpaired reads
sra tutorial fastq-dump written 2.5 years ago by t.kuilman • 480 • updated 2.5 years ago by Istvan Albert ♦♦ 77k
14
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4
answers
1.3k
views
4
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Forum: Fastest way from SRA to fastq PE reads
sra fastq fastq-dump forum vdb-dump rna-seq written 2.6 years ago by Avi • 60
5
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1
answer
2.9k
views
1
answer
SRAtoolkit error during fastq-dump
software error sratoolkit fastq-dump chip-seq written 2.6 years ago by dally • 160 • updated 2.6 years ago by piet • 1.5k
0
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1
answer
1.2k
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1
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fastq file from fast-dump -split-3 contains no quality score info
tophat open fastq-dump written 3.0 years ago by colonppg • 90
11
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3
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5.7k
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3
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fastq-dump split-3 output
sra fastq-dump written 3.1 years ago by colonppg • 90
1
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1
answer
2.8k
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1
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fastq-dump stream to named pipe (fifo) to Trinity
next-gen fastq-dump rna-seq sequencing written 3.8 years ago by glarue • 0 • updated 3.1 years ago by Biostar ♦♦ 20
0
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2
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1.1k
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2
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SRA file looks wierd after conversion to fastq
sra fastq fastq-dump written 3.6 years ago by Saad Khan • 310 • updated 3.6 years ago by matted ♦ 6.9k
5
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5
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6.0k
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5
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sra toolkit program fastq-dump question.
sra toolkit fastq-dump error written 3.7 years ago by jinhwa1112 • 10 • updated 3.6 years ago by DCGenomics • 300
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