Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: fastq-dump • reset
or   Classic search
<prev • 34 results • page 1 of 2 • next >
33
votes
0
answers
4.7k
views
31 follow
0
answers
Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 12 months ago by ATpoint ♦ 19k
8
votes
1
answer
586
views
1
answer
why fastq-dump doesn`t work?
sra prefetch fastq-dump written 5 months ago by star • 170 • updated 5 months ago by ATpoint ♦ 19k
0
votes
0
answers
374
views
0
answers
Windows batch cmd for fastq-dump
sra windows fastq-dump written 8 months ago by rrbutleriii • 70 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
419
views
0
answers
Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 6 months ago by V • 110
12
votes
1
answer
2.1k
views
12 follow
1
answer
Method to Check Fastq Completeness after Fastq-dump
fastq-dump completeness written 2.5 years ago by Shicheng Guo • 7.6k • updated 7 months ago by ATpoint ♦ 19k
0
votes
1
answer
676
views
1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 7 months ago by beneopp • 0 • updated 7 months ago by Phil Ewels • 410
3
votes
1
answer
1.2k
views
1
answer
how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 9 months ago by jaqx008 • 50 • updated 9 months ago by piyushjo • 110
3
votes
2
answers
395
views
5 follow
2
answers
how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 9 months ago by fanglujing • 30 • updated 9 months ago by t.kuilman • 750
3
votes
1
answer
7.4k
views
1
answer
fastq-dump split-spot and skip-technical
skip-technical fastq-dump split-spot written 3.4 years ago by Shicheng Guo • 7.6k • updated 10 months ago by RamRS ♦ 22k
0
votes
1
answer
763
views
1
answer
How to wake up fastq-dump --split 3 process?
htop fastq-dump rna-seq written 12 months ago by Cy • 0 • updated 12 months ago by ATpoint ♦ 19k
5
votes
1
answer
840
views
1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 13 months ago by Mitra • 0 • updated 13 months ago by ATpoint ♦ 19k
1
vote
1
answer
1.7k
views
1
answer
fast-dump error, SRA Toolkit is Updated???
sra toolkit fastq-dump written 16 months ago by oars • 150
4
votes
1
answer
923
views
1
answer
Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 17 months ago by xarielle • 0 • updated 17 months ago by Istvan Albert ♦♦ 80k
1
vote
3
answers
923
views
5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 18 months ago by majeedaasim • 40 • updated 18 months ago by jomo018 • 480
2
votes
1
answer
464
views
1
answer
Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 19 months ago by dec986 • 200
2
votes
2
answers
1.9k
views
2
answers
How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 24 months ago by bioinform • 20 • updated 24 months ago by ole.tange • 3.4k
4
votes
1
answer
834
views
1
answer
Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump written 2.1 years ago by biolab • 1.1k • updated 2.1 years ago by Devon Ryan ♦ 91k
1
vote
0
answers
1.7k
views
0
answers
Help needed with fastq-dump (SRA toolkit)
fastq-dump sra-toolkit written 2.2 years ago by RNAeye • 60
3
votes
0
answers
907
views
0
answers
How to download a 100 fastq files at once using SraToolkit fastq-dump?
sratoolkit fastq-dump written 2.3 years ago by flight029000 • 0
1
vote
1
answer
924
views
1
answer
sra to fastq conversion - paired-end file won't split
sra fastq fastq-dump sratoolkit written 2.6 years ago by rioualen • 380
8
votes
2
answers
4.1k
views
5 follow
2
answers
fastq dump error
sra sra toolkit fastq-dump written 2.6 years ago by Satyajeet Khare • 1.4k • updated 2.6 years ago by piet • 1.7k
2
votes
0
answers
1.6k
views
0
answers
SRA toolkit internet settings
sra toolkit fastq-dump rna-seq sequencing written 2.9 years ago by BCArg • 60
2
votes
0
answers
1.0k
views
0
answers
fastq-dump error: transfer unknown
sra next-gen fastq-dump written 3.0 years ago by mufernando • 10
5
votes
3
answers
1.4k
views
3
answers
Problem while downloading RNAseq data from NCBI via command line
sra toolkit fastq-dump rna-seq written 3.0 years ago by BCArg • 60 • updated 3.0 years ago by microfuge • 1.1k
2
votes
2
answers
1.3k
views
2
answers
help with fastq-dump
sratool fastq-dump written 3.1 years ago by tsai.141 • 0
17
votes
2
answers
3.0k
views
2
answers
What is the difference between --split-files and --split-3 when using fastq-dump?
paired end reads fastq-dump rna-seq written 3.3 years ago by elenajmichel • 60 • updated 3.3 years ago by genomax ♦ 69k
6
votes
0
answers
1.9k
views
0
answers
Tutorial: How to extract fastq files from SRA data that contains both paired and unpaired reads
sra tutorial fastq-dump written 3.3 years ago by t.kuilman • 750 • updated 3.3 years ago by Istvan Albert ♦♦ 80k
15
votes
4
answers
1.7k
views
4
answers
Forum: Fastest way from SRA to fastq PE reads
sra fastq fastq-dump forum vdb-dump rna-seq written 3.4 years ago by Avi • 70
5
votes
1
answer
4.1k
views
1
answer
SRAtoolkit error during fastq-dump
software error sratoolkit fastq-dump chip-seq written 3.4 years ago by dally • 180 • updated 3.4 years ago by piet • 1.7k
0
votes
1
answer
1.4k
views
1
answer
fastq file from fast-dump -split-3 contains no quality score info
tophat open fastq-dump written 3.9 years ago by colonppg • 100
<prev • 34 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Germany, 1 minute ago
  • United Kingdom, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 862 users visited in the last hour