Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 244 results • page 1 of 9 • next >
3
votes
0
answers
87
views
0
answers
cutting overrepresented sequences (recognized by fatsqc)
genome sequencing sequence genome-sequence fastqc written 3 days ago by Negin • 0
7
votes
3
answers
88
views
3
answers
Sequencing PHRED quality confusion
illumina 1.5 illumina 1.9 fastqc written 7 days ago by piyushjo • 270 • updated 7 days ago by Istvan Albert ♦♦ 83k
6
votes
0
answers
216
views
0
answers
Per Base Sequence Content
genome sequencing sequence fastqc written 7 days ago by Negin • 0 • updated 7 days ago by wm • 280
3
votes
1
answer
94
views
5 follow
1
answer
Per base sequence content: "A" underrepresented
rna-seq fastqc written 20 days ago by Wöps • 10 • updated 20 days ago by genomax ♦ 80k
1
vote
1
answer
98
views
1
answer
ATAC-Seq kmer removal
kmers fastqc atac-seq trim cutadapt written 5 weeks ago by elenichri • 10 • updated 4 weeks ago by h.mon ♦ 29k
6
votes
0
answers
257
views
0
answers
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
duplication rna-seq fastqc written 4 months ago by Eric Lim • 1.6k • updated 10 weeks ago by Biostar ♦♦ 20
35
votes
3
answers
2.1k
views
3
answers
Do I have to check every fastqc to make good quality?
gene fastq sequencing rna-seq fastqc written 3.8 years ago by khaeuk • 80 • updated 11 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
177
views
0
answers
Help Troubleshooting FASTQC
troubleshoot metagenomic fastqc written 3 months ago by mac03pat • 30 • updated 3 months ago by yztxwd • 300
0
votes
0
answers
156
views
0
answers
Read quality only 14
sequencing quality quality score identical fastqc written 3 months ago by ericjanhoekstra • 0 • updated 3 months ago by genomax ♦ 80k
1
vote
1
answer
1.7k
views
5 follow
1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 15 months ago by beneopp • 0 • updated 3 months ago by dgpiury • 0
2
votes
0
answers
230
views
0
answers
not able to run Fastqc in Centos server
genomics fastqc written 4 months ago by sunnykevin97 • 40 • updated 4 months ago by genomax ♦ 80k
5
votes
1
answer
155
views
1
answer
What is the best tool for doing Quality Control checks on my raw RNA-seq data?
qc rna-seq fastqc written 4 months ago by anamaria • 90 • updated 4 months ago by adam.faranda • 80
2
votes
0
answers
412
views
0
answers
3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 5 months ago by gmchaput • 10
4
votes
2
answers
2.2k
views
2
answers
Installing MultiQC on Ubuntu
ngs multiqc fastqc written 21 months ago by m93 • 200 • updated 5 months ago by Phil Ewels • 510
0
votes
1
answer
270
views
1
answer
Problem with N sequences in fastqc file
fastq fastqc written 5 months ago by carina2817 • 20 • updated 5 months ago by yztxwd • 300
1
vote
1
answer
524
views
1
answer
FastQC wont run
windows fastqc written 5 months ago by anna • 0 • updated 5 months ago by hugo.avila • 10
1
vote
1
answer
189
views
1
answer
miRNA fastqc sequence length distribution with UMI
qiagene trimming fastqc mirna cutadapt written 5 months ago by maria2019 • 90 • updated 5 months ago by swbarnes2 ♦ 7.5k
2
votes
1
answer
276
views
1
answer
why my WGS bam file (after alignment) shows more reads than the starting fastq file
total read wgs qualimap qc fastqc written 5 months ago by maria2019 • 90
5
votes
2
answers
7.8k
views
2
answers
Remove Illumina TruSeq Index adapters
sequencing scythe next-gen rna-seq fastqc written 5.2 years ago by enricoferrero • 790 • updated 5 months ago by milad eidi • 0
2
votes
2
answers
2.8k
views
2
answers
Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.7 years ago by tunl • 60 • updated 6 months ago by genetician2016 • 10
4
votes
1
answer
500
views
1
answer
Snakemake FastQC MissingOutputFiles ErrorM
snakemake fastqc written 6 months ago by lasejourny • 10 • updated 6 months ago by bari.ballew • 210
10
votes
1
answer
312
views
5 follow
1
answer
Sequence duplication levels in de-novo assemblies
de-novo fastqc duplication written 6 months ago by yp19 • 50 • updated 6 months ago by predeus • 1.3k
1
vote
0
answers
272
views
0
answers
Failure in generating fastq from human fasta
genome art next-gen fastqc written 6 months ago by marongiu.luigi • 490
0
votes
0
answers
259
views
0
answers
Use fastQC and then multiQC on ddRAD fastq files ?
paired-end reads ddrad multiqc fastqc written 7 months ago by nbarthelemy01 • 10 • updated 7 months ago by lieven.sterck ♦ 7.2k
2
votes
0
answers
336
views
0
answers
FastQC SequenceFormatException Midline didn't start with '+'
software error rna-seq fastqc written 7 months ago by 2899135311 • 0 • updated 7 months ago by WouterDeCoster ♦ 43k
0
votes
0
answers
397
views
0
answers
missingoutputexception, snakemake after completing 95% analysis
snakemake rna-seq fastqc written 8 months ago by arshil • 0 • updated 7 months ago by Biostar ♦♦ 20
8
votes
0
answers
1.3k
views
6 follow
0
answers
How to interpret Per sequence GC content module in FastQC for RNA-seq data?
qc gc-content rna-seq fastqc written 9 months ago by Arindam Ghosh • 200
0
votes
0
answers
475
views
0
answers
What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 7 months ago by MutationalMeltdown • 50
0
votes
0
answers
360
views
0
answers
Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 8 months ago by bz3 • 0
0
votes
1
answer
320
views
1
answer
Explanation for kmer enrichment after skewer trimming of the RNA-seq reads
skewer kmer fastqc written 13 months ago by tobytaogf • 0 • updated 8 months ago by hongshan.jiang • 0
<prev • 244 results • page 1 of 9 • next >
Recent Votes
Recent Locations • All »
  • United States, 5 minutes ago
  • Southern Medical University, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1176 users visited in the last hour