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<prev • 135 results • page 1 of 5 • next >
3
votes
0
answers
126
views
0
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No change in number of reads and quality after removing rRNA contamination using sortmerna
seqmonk sortmerna rna-seq fastqc written 4 days ago by Sumit Paliwal • 20
2
votes
1
answer
82
views
1
answer
fastqc gc-content peak and adapter content
fastqc written 11 days ago by David • 50
2
votes
1
answer
86
views
1
answer
FastQC low %A in per base sequence content
rna-seq fastqc written 14 days ago by Duff • 620 • updated 14 days ago by harold.smith.tarheel • 3.6k
2
votes
0
answers
105
views
0
answers
What could be the best explanation for a dip in phred quality score at the near beginning of reads?
trimmomatic illumina quality phred fastqc written 18 days ago by Vijay Lakhujani • 1000
2
votes
1
answer
90
views
1
answer
Difference in duplicate number with samtools flagstat and multiqc/fastqc
duplicates fastqc samtools multiqc chipseq written 27 days ago by ZheFrench • 30
6
votes
1
answer
199
views
1
answer
fastqc: kmer-content failed
kmer-content fail fastqc written 6 weeks ago by shuchen • 10
0
votes
0
answers
152
views
0
answers
rnaseq sequence analysis and trimming
trimmomatic fastqc rna-seq cutadapt written 9 weeks ago by mail4malla • 0 • updated 8 weeks ago by WouterDeCoster ♦ 19k
0
votes
0
answers
178
views
0
answers
Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
illumina adapter length nebnex kit fastqc written 10 weeks ago by seta • 890
5
votes
2
answers
810
views
2
answers
Fastqc result collection script
fastqc written 19 months ago by Shicheng Guo • 4.4k • updated 10 weeks ago by h.mon ♦ 6.6k
8
votes
2
answers
973
views
2
answers
Why is FastQC not working after using Trim galore?
fastq fastqc written 11 months ago by beausoleilmo • 70 • updated 11 weeks ago by h.mon ♦ 6.6k
1
vote
0
answers
160
views
0
answers
trimming reads from miseq
duplcation level miseq trim fastqc written 11 weeks ago by mary • 0
0
votes
0
answers
133
views
0
answers
FASTQC problem - repetitive k-mer
kmer rna-seq fastqc written 12 weeks ago by blur • 50
1
vote
1
answer
267
views
1
answer
FastQC in R
R rna-seq fastqc written 12 weeks ago by rjames • 0 • updated 12 weeks ago by James Ashmore • 1.5k
1
vote
0
answers
304
views
0
answers
Fastqc 0.67 errors while Fastqc 0.64 does not
fastqc written 5 months ago by rjames • 0
0
votes
1
answer
180
views
1
answer
fastQC - case of the anomalous last base
rna-seq fastqc written 3 months ago by wasphunter • 0 • updated 3 months ago by Grinch • 0
4
votes
1
answer
265
views
1
answer
How to identify adapters in FASTQ file?
ngs rna-seq fastqc written 3 months ago by barrypraveen • 0 • updated 3 months ago by WouterDeCoster ♦ 19k
0
votes
0
answers
125
views
0
answers
Prinseq running error
fastqc written 3 months ago by snanda73 • 0 • updated 3 months ago by WouterDeCoster ♦ 19k
23
votes
4
answers
595
views
7 follow
4
answers
Tool: FastQt : a clone of FastQC in C++/Qt
fastq fastqc tool qt cpp written 6 months ago by sacha • 770
3
votes
3
answers
317
views
3
answers
Filtering Overlapping Paired-end Reads
illumina ngs fastqc written 4 months ago by ScubaChris • 10
2
votes
2
answers
3.0k
views
2
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 14 months ago by Shahzad • 10 • updated 4 months ago by mafer_309 • 0
1
vote
1
answer
199
views
1
answer
per tile sequence quality decreases after QC with sickle
fastqc sickle per tile sequence quality written 4 months ago by mary • 0
3
votes
1
answer
258
views
1
answer
How to clean bad tiles from Illumina reads?
illumina quality rna-seq trim fastqc written 4 months ago by blazer9191 • 0 • updated 4 months ago by harold.smith.tarheel • 3.6k
19
votes
3
answers
428
views
8 follow
3
answers
Forum: Explaining purpose of using FastQC to a colleague
forum fastqc written 4 months ago by ropolocan • 260 • updated 4 months ago by Brian Bushnell ♦ 12k
2
votes
0
answers
276
views
0
answers
How to use R`s Short read package to get a quality report on a set of paired fastq files?
R fastqc short read written 4 months ago by human_genomeXXX • 0
3
votes
0
answers
257
views
0
answers
fastqc report of miseq data
miseq fastqc written 5 months ago by krishnapashu912 • 0
4
votes
0
answers
457
views
0
answers
Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 5 months ago by hinkel2 • 10 • updated 5 months ago by genomax ♦ 29k
1
vote
1
answer
320
views
1
answer
Quality check of Medip Seq Data
medipseq qualityanalysis fastqc written 6 months ago by gskbioinfo143 • 30 • updated 6 months ago by Biostar ♦♦ 20
5
votes
1
answer
263
views
1
answer
Direction FastQC report
fastqc written 6 months ago by biotech • 500 • updated 6 months ago by mastal511 • 1.7k
2
votes
1
answer
524
views
1
answer
fastq file error
fastq sortmerna rna-seq fastqc written 6 months ago by Pals • 1.3k
1
vote
0
answers
319
views
0
answers
How to carry out quality control using Trimmomatic on SRA reads of SAGE-RNASeq?
trimmomatic sage qc rna-seq fastqc written 6 months ago by hasche89 • 0
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