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<prev • 237 results • page 1 of 8 • next >
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not able to run Fastqc in Centos server
genomics fastqc written 6 days ago by sunnykevin97 • 10 • updated 6 days ago by genomax ♦ 75k
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120
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Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
duplication rna-seq fastqc written 23 days ago by Eric Lim • 1.6k
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What is the best tool for doing Quality Control checks on my raw RNA-seq data?
qc rna-seq fastqc written 23 days ago by anamaria • 80 • updated 23 days ago by adam.faranda • 80
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201
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3' Tag-Seq / DE Analysis - FASTQC detects overrepresented sequences as well as fails per base & GC sequence content
trimmomatic tag-seq sortmerna rna-seq fastqc written 6 weeks ago by gmchaput • 10
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Installing MultiQC on Ubuntu
ngs multiqc fastqc written 17 months ago by m93 • 170 • updated 6 weeks ago by Phil Ewels • 470
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1
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138
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1
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Problem with N sequences in fastqc file
fastq fastqc written 7 weeks ago by carina2817 • 10 • updated 7 weeks ago by yztxwd • 230
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1
answer
203
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1
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FastQC wont run
windows fastqc written 7 weeks ago by anna • 0 • updated 7 weeks ago by hugo.avila • 0
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1
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106
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1
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miRNA fastqc sequence length distribution with UMI
qiagene trimming fastqc mirna cutadapt written 8 weeks ago by maria2019 • 50 • updated 8 weeks ago by swbarnes2 ♦ 7.0k
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174
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why my WGS bam file (after alignment) shows more reads than the starting fastq file
total read wgs qualimap qc fastqc written 8 weeks ago by maria2019 • 50
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Remove Illumina TruSeq Index adapters
sequencing scythe next-gen rna-seq fastqc written 4.9 years ago by enricoferrero • 780 • updated 8 weeks ago by milad eidi • 0
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2
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.4 years ago by tunl • 60 • updated 11 weeks ago by genetician2016 • 10
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1
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279
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1
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Snakemake FastQC MissingOutputFiles ErrorM
snakemake fastqc written 12 weeks ago by lasejourny • 10 • updated 11 weeks ago by bari.ballew • 190
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1
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258
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5 follow
1
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Sequence duplication levels in de-novo assemblies
de-novo fastqc duplication written 12 weeks ago by yp19 • 50 • updated 11 weeks ago by predeus • 1.3k
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174
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Failure in generating fastq from human fasta
genome art next-gen fastqc written 12 weeks ago by marongiu.luigi • 420
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Use fastQC and then multiQC on ddRAD fastq files ?
paired-end reads ddrad multiqc fastqc written 3 months ago by nbarthelemy01 • 10 • updated 3 months ago by lieven.sterck ♦ 6.4k
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191
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FastQC SequenceFormatException Midline didn't start with '+'
software error rna-seq fastqc written 3 months ago by 2899135311 • 0 • updated 3 months ago by WouterDeCoster ♦ 42k
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missingoutputexception, snakemake after completing 95% analysis
snakemake rna-seq fastqc written 4 months ago by arshil • 0 • updated 3 months ago by Biostar ♦♦ 20
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6 follow
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How to interpret Per sequence GC content module in FastQC for RNA-seq data?
qc gc-content rna-seq fastqc written 5 months ago by Arindam Ghosh • 200
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What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 3 months ago by MutationalMeltdown • 30
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215
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 4 months ago by bz3 • 0
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1
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268
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1
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Explanation for kmer enrichment after skewer trimming of the RNA-seq reads
skewer kmer fastqc written 9 months ago by tobytaogf • 0 • updated 4 months ago by hongshan.jiang • 0
4
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292
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Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 4 months ago by F. Golestan • 20
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1
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1.1k
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5 follow
1
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Getting just fastqc.zip file?
rna-seq fastqc written 21 months ago by star • 190 • updated 5 months ago by vinay.rs • 10
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1
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473
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7 follow
1
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FastQC before and after Base Quality Score Recalibration (BQSR)
gatk bqsr snp fastqc written 5 months ago by alicia.poppy • 40
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3
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237
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Divergent number of replicates between FastQC and samtools
samtools star fastqc written 6 months ago by user31888 • 70 • updated 6 months ago by i.sudbery ♦ 6.3k
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189
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FastQC Poor Quality in first base only
ngs fastqc base quality sequencing written 6 months ago by ilovesuperheroes1993 • 0
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1
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3.9k
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5 follow
1
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Cannot run FASTQC on terminal
module fastqc written 18 months ago by fatin nadhirah • 0 • updated 6 months ago by whadgar • 0
9
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2
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6 follow
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mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 17 months ago by salamandra • 260 • updated 6 months ago by Biostar ♦♦ 20
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4
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7 follow
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very confused with GC bias
fastqc written 7 months ago by 9521ljh • 10 • updated 6 months ago by chen • 1.9k
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291
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Help filling the configuration file for the masurca assembler
illumina assembly masurca pacbio fastqc written 6 months ago by nanoide • 30
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