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4
votes
1
answer
830
views
5 follow
1
answer
Getting just fastqc.zip file?
rna-seq fastqc written 15 months ago by star • 150 • updated 3 hours ago by vinay.rs • 10
8
votes
1
answer
160
views
7 follow
1
answer
FastQC before and after Base Quality Score Recalibration (BQSR)
gatk bqsr snp fastqc written 5 days ago by alicia.poppy • 40
9
votes
3
answers
126
views
3
answers
Divergent number of replicates between FastQC and samtools
samtools star fastqc written 13 days ago by user31888 • 60 • updated 13 days ago by i.sudbery ♦ 4.8k
0
votes
0
answers
87
views
0
answers
FastQC Poor Quality in first base only
ngs fastqc base quality sequencing written 18 days ago by ilovesuperheroes1993 • 0
3
votes
1
answer
2.8k
views
5 follow
1
answer
Cannot run FASTQC on terminal
module fastqc written 13 months ago by fatin nadhirah • 0 • updated 21 days ago by whadgar • 0
8
votes
2
answers
656
views
6 follow
2
answers
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 12 months ago by salamandra • 200 • updated 29 days ago by Biostar ♦♦ 20
10
votes
4
answers
289
views
7 follow
4
answers
very confused with GC bias
fastqc written 6 weeks ago by 9521ljh • 10 • updated 5 weeks ago by chen • 1.9k
0
votes
0
answers
87
views
0
answers
Help filling the configuration file for the masurca assembler
illumina assembly masurca pacbio fastqc written 5 weeks ago by nanoide • 30
0
votes
0
answers
85
views
0
answers
FastQC Failed to create archive: null
java sequence qc bam fastqc written 5 weeks ago by jason.williams • 0
2
votes
3
answers
204
views
3
answers
FastQC results interpretation
sequencing dna-seq shotgun rna-seq fastqc written 7 weeks ago by Tasneem Fetian • 0 • updated 6 weeks ago by kristoffer.vittingseerup • 1.8k
2
votes
0
answers
139
views
0
answers
order of trimming for RNA-seq QC
cutadapt qc rna-seq fastqc written 7 weeks ago by maria2019 • 30
1
vote
0
answers
159
views
0
answers
How to interpret fast or multiQC reports of easy HiC or HiC data
easyhic hic fastqc written 8 weeks ago by msimmer92 • 180
0
votes
0
answers
169
views
0
answers
What is the importance of checking per base sequence content and per sequence GC content during Quality Control of NGS reads?
fastqc next-gen sequencing written 8 weeks ago by Cookie-san • 0
7
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2
answers
2.8k
views
2
answers
FastQC report: Per base N content is a pass but in the overrepresented sequences I have Ns. Why could that be?
fastqc sequencing written 4.8 years ago by eva • 10 • updated 8 weeks ago by Biostar ♦♦ 20
3
votes
0
answers
229
views
0
answers
fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 12 weeks ago by Assa Yeroslaviz • 1.2k • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
115
views
1
answer
fastqc acceptable file
rnaseq fastqc written 9 weeks ago by Morris_Chair • 110
0
votes
0
answers
224
views
0
answers
GC content of 10x Genomics
10x gc content fastqc written 9 weeks ago by Assa Yeroslaviz • 1.2k
1
vote
0
answers
166
views
0
answers
how to remove warning and failures observed inQuality report by Fastqc for RNA-Seq data
quality control rna-seq fastqc written 9 weeks ago by aiswaryabioinfo • 10
2
votes
0
answers
155
views
0
answers
RNASeq analysis, FastQC how to solve warning and fail
rnaseq fastq fastqc ngs duplication written 10 weeks ago by Kian • 40
2
votes
1
answer
223
views
1
answer
FastQC with java.lang.InternalError
software error fastqc written 10 weeks ago by zhangwel • 0 • updated 10 weeks ago by Pierre Lindenbaum ♦ 120k
0
votes
0
answers
116
views
0
answers
Incomplete peaks in "Per sequence quality scores"
fastqc report fastqc written 10 weeks ago by kehoe • 0
0
votes
0
answers
220
views
0
answers
How to filter fastq paired-end reads based on Per Tile Sequence Quality
sequencing fastqc written 10 weeks ago by bio_d • 0
6
votes
2
answers
256
views
5 follow
2
answers
Effect of trimming on alignment and fastqc report.
alignment trim galore next gen fastqc written 11 weeks ago by kspata • 50 • updated 11 weeks ago by Friederike ♦ 4.2k
7
votes
3
answers
231
views
5 follow
3
answers
How should I handle the raw reads with failed per base sequence content in fastQC
rna-seq fastqc written 11 weeks ago by yujinlong000703 • 10 • updated 11 weeks ago by Ido Tamir ♦ 5.0k
1
vote
1
answer
587
views
1
answer
What is the right illumina universal adapter sequence for trimming paired-end reads?
trimadaptor wes fastqc written 12 weeks ago by maria2019 • 30 • updated 12 weeks ago by Vijay Lakhujani ♦ 4.1k
3
votes
1
answer
166
views
1
answer
Does strange fastQC GC content report cause a problem for WES analysis?
gc content wes fastqc written 12 weeks ago by maria2019 • 30 • updated 12 weeks ago by JC ♦ 7.9k
5
votes
2
answers
204
views
2
answers
RNAseq sample never as A in last base
rna-seq fastqc written 3 months ago by i.sudbery ♦ 4.8k • updated 3 months ago by lieven.sterck ♦ 5.2k
4
votes
1
answer
266
views
1
answer
Why did FastQC reports get WORSE after trimming my data?
rna-seq trim_galore fastqc written 3 months ago by patrick.botros • 0 • updated 3 months ago by i.sudbery ♦ 4.8k
2
votes
1
answer
268
views
5 follow
1
answer
high duplication levels in R1 reads of 10x Genomics samples
10x duplication rna-seq fastqc written 3 months ago by Assa Yeroslaviz • 1.2k • updated 3 months ago by i.sudbery ♦ 4.8k
2
votes
2
answers
341
views
2
answers
Extract overrepresented sequences from fastq or fastqc
fastq overrepresented rna-seq fastqc written 3 months ago by michele.tebaldi.92 • 10 • updated 3 months ago by Ido Tamir ♦ 5.0k
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