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<prev • 228 results • page 1 of 8 • next >
2
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Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
trimmomatic rna-seq fastqc written 3.2 years ago by tunl • 60 • updated 5 days ago by genetician2016 • 0
4
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1
answer
109
views
1
answer
Snakemake FastQC MissingOutputFiles ErrorM
snakemake fastqc written 8 days ago by lasejourny • 10 • updated 7 days ago by bari.ballew • 190
1
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0
answers
114
views
0
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Failure in generating fastq from human fasta
genome art next-gen fastqc written 12 days ago by marongiu.luigi • 380
0
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0
answers
63
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0
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Use fastQC and then multiQC on ddRAD fastq files ?
paired-end reads ddrad multiqc fastqc written 18 days ago by nbarthelemy01 • 10 • updated 18 days ago by lieven.sterck ♦ 5.8k
2
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0
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129
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0
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FastQC SequenceFormatException Midline didn't start with '+'
software error rna-seq fastqc written 21 days ago by 2899135311 • 0 • updated 21 days ago by WouterDeCoster ♦ 40k
0
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221
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0
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missingoutputexception, snakemake after completing 95% analysis
snakemake rna-seq fastqc written 10 weeks ago by arshil • 0 • updated 26 days ago by Biostar ♦♦ 20
4
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0
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287
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0
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How to interpret Per sequence GC content module in FastQC for RNA-seq data?
qc gc-content rna-seq fastqc written 11 weeks ago by Arindam Ghosh • 170
0
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0
answers
157
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0
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What does a 'normal' FASTQC report look like for scRNA-seq data?
scrna-seq 10x fastq rna-seq fastqc written 6 weeks ago by MutationalMeltdown • 20
0
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0
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135
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0
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Fastqc works in terminal fastqc not found during jupyter call
software error assembly quality reads fastqc written 8 weeks ago by bz3 • 0
0
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1
answer
218
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1
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Explanation for kmer enrichment after skewer trimming of the RNA-seq reads
skewer kmer fastqc written 7 months ago by tobytaogf • 0 • updated 8 weeks ago by hongshan.jiang • 0
4
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0
answers
239
views
0
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Running Trimmomatic for bulk RNAseq data
trimmomatic rna-seq fastqc written 10 weeks ago by F. Golestan • 20
4
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1
answer
973
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5 follow
1
answer
Getting just fastqc.zip file?
rna-seq fastqc written 18 months ago by star • 190 • updated 3 months ago by vinay.rs • 10
8
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1
answer
350
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7 follow
1
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FastQC before and after Base Quality Score Recalibration (BQSR)
gatk bqsr snp fastqc written 3 months ago by alicia.poppy • 40
9
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3
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196
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3
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Divergent number of replicates between FastQC and samtools
samtools star fastqc written 3 months ago by user31888 • 70 • updated 3 months ago by i.sudbery ♦ 5.3k
0
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0
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144
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0
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FastQC Poor Quality in first base only
ngs fastqc base quality sequencing written 3 months ago by ilovesuperheroes1993 • 0
3
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1
answer
3.4k
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5 follow
1
answer
Cannot run FASTQC on terminal
module fastqc written 16 months ago by fatin nadhirah • 0 • updated 3 months ago by whadgar • 0
8
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2
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776
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6 follow
2
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mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 15 months ago by salamandra • 230 • updated 4 months ago by Biostar ♦♦ 20
10
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4
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521
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7 follow
4
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very confused with GC bias
fastqc written 4 months ago by 9521ljh • 10 • updated 4 months ago by chen • 1.9k
0
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0
answers
194
views
0
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Help filling the configuration file for the masurca assembler
illumina assembly masurca pacbio fastqc written 4 months ago by nanoide • 30
0
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0
answers
140
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0
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FastQC Failed to create archive: null
java sequence qc bam fastqc written 4 months ago by jason.williams • 0
2
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3
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274
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3
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FastQC results interpretation
sequencing dna-seq shotgun rna-seq fastqc written 4 months ago by Tasneem Fetian • 0 • updated 4 months ago by kristoffer.vittingseerup • 2.3k
2
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0
answers
233
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0
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order of trimming for RNA-seq QC
cutadapt qc rna-seq fastqc written 4 months ago by maria2019 • 30
1
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0
answers
244
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0
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How to interpret fast or multiQC reports of easy HiC or HiC data
easyhic hic fastqc written 5 months ago by msimmer92 • 200
0
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0
answers
304
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0
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What is the importance of checking per base sequence content and per sequence GC content during Quality Control of NGS reads?
fastqc next-gen sequencing written 5 months ago by Cookie-san • 40
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3.0k
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2
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FastQC report: Per base N content is a pass but in the overrepresented sequences I have Ns. Why could that be?
fastqc sequencing written 5.1 years ago by eva • 10 • updated 5 months ago by Biostar ♦♦ 20
3
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0
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343
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0
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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 6 months ago by Assa Yeroslaviz • 1.2k • updated 5 months ago by Biostar ♦♦ 20
0
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1
answer
176
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1
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fastqc acceptable file
rnaseq fastqc written 5 months ago by Morris_Chair • 120
0
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0
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364
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0
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GC content of 10x Genomics
10x gc content fastqc written 5 months ago by Assa Yeroslaviz • 1.2k
1
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244
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0
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how to remove warning and failures observed inQuality report by Fastqc for RNA-Seq data
quality control rna-seq fastqc written 5 months ago by aiswaryabioinfo • 20
2
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0
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232
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0
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RNASeq analysis, FastQC how to solve warning and fail
rnaseq fastq fastqc ngs duplication written 5 months ago by Kian • 40
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