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3
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127
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FASTQC after trimming: how do I know if it is good enough to proceed to alignment?
trimming per base sequence content fastqc written 25 days ago by Ash • 10
2
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1
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193
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1
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Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in fastqc?
ngs fastqc written 5 weeks ago by cg1440 • 20 • updated 5 weeks ago by Devon Ryan ♦ 98k
2
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1
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116
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1
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How to handle "perbase quality failed" issue?
rna-seq fastqc written 5 weeks ago by mathavanbioinfo • 60
2
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2
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185
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2
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Fastq file with very high per base sequence quality and no box-whisker plot
novaseq rna-seq fastqc written 6 weeks ago by priya.saxena • 0
0
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2
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304
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2
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Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
trimmomatic ngs fastqc written 6 weeks ago by cg1440 • 20 • updated 6 weeks ago by Carlo Yague ♦ 5.5k
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212
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1
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Issues with adapter trimming when there are no adapters?
adapters illumina fastqc trimgalore cutadapt written 6 weeks ago by dare_devil • 1.3k
3
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135
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Filter per tile quality
tile genomes fastqc written 7 weeks ago by gubrins • 60
3
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194
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5 follow
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Is trimming necessary for RNAseq?
trimming rna-seq fastqc written 9 weeks ago by Nish314 • 0
2
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1
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224
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5 follow
1
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Installing FastQC for command line in MobaXTerm
command line windows fastqc mobaxterm written 10 weeks ago by chickychocks • 0 • updated 10 weeks ago by i.sudbery ♦ 10k
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134
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Small RNA library contaminated by primers?
adapter trimming primer trimming rna-seq fastqc written 3 months ago by eva.lucarelli • 0
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197
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Duplication rate differs up to 30% from that of Fastqc for single end reads
fastp rna-seq fastqc written 3 months ago by Matthias • 20
0
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0
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199
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0
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Galaxy workflow concatenate
workflow galaxy multiqc fastqc written 3 months ago by avelarbio46 • 10
4
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1
answer
203
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1
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bbduk truncated fastq file according to FastQC - help?
pe bbduk metagenome fastqc written 3 months ago by hannahfreund3 • 0 • updated 3 months ago by swbarnes2 ♦ 9.4k
1
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1
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224
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1
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FASTQC per base sequence quality plot
fastqc written 4 months ago by pancakeplant • 0
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297
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Strange, FastQC doesn't work on windows, any suggestions?
ngs fastqc written 4 months ago by seta • 1.4k
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2
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241
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2
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Why sequence length disturbution failed after adapter trimming: fastqc?
adaptertrimming fastqc rna-seq qualitycontrol written 4 months ago by newbie • 90 • updated 4 months ago by Sam • 120
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222
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0
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Convert fastqc.gz file to BED file format
bed chip-seq rna-seq fastqc written 4 months ago by ss20g16 • 0 • updated 4 months ago by GenoMax ♦ 95k
1
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169
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0
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Specific over-represented sequence FastQC
rna-seq fastqc written 5 months ago by harrydolan.dc • 0
0
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372
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0
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How to find adapter contamination information in MultiQC result
rna-seq multiqc fastqc written 5 months ago by Manoj • 80
3
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1.3k
views
0
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GC content of 10x Genomics
10x gc content fastqc written 21 months ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by Eugene A • 90
5
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3
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735
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5 follow
3
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RNAseq sample never as A in last base
rna-seq fastqc written 22 months ago by i.sudbery ♦ 10k • updated 5 months ago by adi.rotem • 0
0
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1
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232
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1
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Understanding the textual output file of FastQC - Per Base N Content
fastqc written 5 months ago by amitfinkelstein • 0 • updated 5 months ago by antonioggsousa • 1.9k
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199
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A peak on FastQC graph Sequence Duplication Levels on MNase seq data
mnase seq sequence duplication levels fastqc written 5 months ago by daria.d.kozhevnikova • 0
0
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185
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0
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over-representation of sequences that map to "Drosophila melanogaster signal recognition particle
srp representation trap-seq rna-seq fastqc written 5 months ago by DataFanatic • 300
0
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1
answer
246
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1
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How to put CutAdapt in path for running TrimGalore?
fastqc trimgalore cutadapt written 6 months ago by james.galske • 0 • updated 6 months ago by Shalu Jhanwar • 480
0
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1
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142
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1
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Issues analysing splitted fastq files with fastqc
fastqc written 6 months ago by youssef.snoussi1994 • 0 • updated 6 months ago by benformatics • 2.0k
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2
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229
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5 follow
2
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fastqc result: whether trim off low quality reads or not
multiqc quality_check fastqc written 6 months ago by dpc • 150 • updated 6 months ago by swbarnes2 ♦ 9.4k
0
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165
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1
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Share FastQC results on GitLab
fastqc html markdown gitlab written 6 months ago by pablo • 160 • updated 6 months ago by Pierre Lindenbaum ♦ 133k
1
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261
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FASTQC result FAILED in adapter content and k-mer section!!!
wgs quality control fastqc written 7 months ago by dpc • 150
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fastqc "Too many tiles (>500) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly"
qc fastqc written 2.9 years ago by josh.cutts1 • 10 • updated 7 months ago by alexgongfy • 0
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