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2
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1
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151
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7 follow
1
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How to interpret the differences of read counts using htseq and feature counts?
htseq next-gen featurecounts rna-seq written 5 days ago by 2822462298 • 10 • updated 5 days ago by michael.ante • 3.6k
1
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1
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200
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1
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RNAseq read counts generated by FeatureCounts
featurecounts rna-seq written 8 weeks ago by Adeler001 • 0
0
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1
answer
109
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1
answer
Different results from featureCounts using gene_id and gene_biotype
biotype featurecounts subread rna-seq readcounts written 5 weeks ago by Nitin Sharma • 30 • updated 5 weeks ago by i.sudbery ♦ 6.6k
0
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0
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105
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0
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featureCounts parameters for RNA-Seq
featurecounts subread rna-seq readcounts written 5 weeks ago by Nitin Sharma • 30 • updated 5 weeks ago by h.mon ♦ 29k
3
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2
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201
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2
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RNA-Seq Read Counting using featureCounts
featurecounts subread rna-seq written 10 weeks ago by deepak18 • 10
0
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1
answer
122
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1
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Using StringTie output GTF with featureCounts to assign reads- low assigned percentage
stringtie featurecounts rna-seq written 11 weeks ago by sg197 • 10 • updated 11 weeks ago by Amar • 630
3
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0
answers
224
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0
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Question about featureCounts
featurecounts rna-seq written 3 months ago by chichaochen • 10
2
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1
answer
330
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1
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Difference between read counts STAR vs featureCounts
featurecounts star rna-seq multimapped written 3 months ago by sg197 • 10 • updated 3 months ago by h.mon ♦ 29k
0
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0
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219
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0
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featureCounts() in Rsubread freezes on gene_biotype as the meta-feature, command-line version doesn't
subread featurecounts rsubread rna-seq written 3 months ago by jirkanov • 0
1
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1
answer
130
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1
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Are single-end reads processed the same as paired-end reads regarding strandedness?
featurecounts strandedness single-end rna-seq written 3 months ago by sg197 • 10 • updated 3 months ago by ATpoint ♦ 28k
0
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1
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173
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1
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No reads assigned to bacterial genome with featureCounts (Rsubread)
R featurecounts rna-seq written 3 months ago by Mathias_H • 20
2
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2
answers
350
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2
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 5 months ago by ankuresearch • 10 • updated 4 months ago by swbarnes2 ♦ 7.2k
2
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0
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186
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0
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Can we make a counting program using GFF3 reference files?
rnaseq htseq-count featurecounts written 5 months ago by ino • 0
1
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0
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164
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0
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Problem in featureCounts file.
featurecounts rna-seq written 5 months ago by hafiz.talhamalik • 230 • updated 5 months ago by genomax ♦ 76k
0
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0
answers
196
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0
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Counting Ribo-seq data on gene and transcript level?
riboseq salmon featurecounts rna-seq written 6 months ago by BPors • 40
1
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1
answer
643
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1
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FeatureCounts count reads per gene (Including Introns)
featurecounts rna-seq written 6 months ago by paulranum11 • 40
1
vote
2
answers
472
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2
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miRna-Seq, featureCounts problem
mirbase featurecounts mirna written 7 months ago by AngAdd • 0 • updated 7 months ago by Buffo • 1.8k
2
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2
answers
418
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2
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44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped reads with STAR
alignment featurecounts star rna-seq written 7 months ago by garbuzov • 20
0
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1
answer
416
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1
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Transform BED file to SAF for featureCounts
featurecounts written 7 months ago by Chironex • 20 • updated 7 months ago by ATpoint ♦ 28k
1
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1
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7.9k
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1
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How can I export featureCounts (Rsubread) results?
R featurecounts rsubread written 5.3 years ago by gustavoborin01 • 30 • updated 8 months ago by sivaranjanisk • 0
0
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0
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648
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0
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Error using feature counts with DESeq2 : Cannot create DESeqData object
deseq2 featurecounts rna-seq written 8 months ago by Cookie-san • 40 • updated 8 months ago by Biostar ♦♦ 20
4
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2
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481
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6 follow
2
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mistakenly ran featureCounts in paired-end mode on single-read data
featurecounts rna-seq written 8 months ago by clboozy • 0 • updated 8 months ago by swbarnes2 ♦ 7.2k
6
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2
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377
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2
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Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 8 months ago by nanoide • 40 • updated 8 months ago by swbarnes2 ♦ 7.2k
0
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2
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481
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2
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 9 months ago by gwebste7 • 0 • updated 9 months ago by Michael Dondrup ♦ 47k
2
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3
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2.2k
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5 follow
3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 15 months ago by Biologist • 190 • updated 9 months ago by Ahmed Alhendi • 30
3
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0
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542
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0
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HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 10 months ago by bkinzep • 0 • updated 10 months ago by h.mon ♦ 29k
17
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1
answer
860
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1
answer
collapsing transcript expression to gene-level expression
featurecounts rna-seq bam written 10 months ago by A • 3.7k
2
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1
answer
852
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1
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Using featureCounts Output for DE analysis in edgeR
featurecounts rna-seq edger written 10 months ago by markm014 • 0 • updated 10 months ago by Friederike ♦ 5.2k
0
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0
answers
365
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0
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Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 11 months ago by raquelgarza95 • 50
0
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0
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514
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0
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Subread and featurecounts read index and annotation once for all
alignment featurecounts rna-seq written 13 months ago by bharata1803 • 450 • updated 11 months ago by Biostar ♦♦ 20
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