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strandness of paired-end data
featurecounts rna-seq written 8 weeks ago by waqaskhokhar999 • 10 • updated 6 days ago by Biostar ♦♦ 20
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1
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139
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How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
featurecounts rna-seq hisat2 written 7 days ago by bk11 • 30 • updated 6 days ago by kristoffer.vittingseerup • 980
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featureCounts to DESeq2: Unable to form object and divide it unequally
R featurecounts subread deseq2 rna-seq written 9 days ago by swarajgaikwad15 • 0
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1
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85
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Strand specific in RNA-seq
featurecounts subread rna-seq written 10 days ago by swarajgaikwad15 • 0 • updated 10 days ago by caggtaagtat • 380
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182
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5 follow
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How to open a .tabular file in R or excel?
tabular featurecounts rna-seq written 22 days ago by writetoroopali • 0
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249
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Problem with extracting read counts from RNA seq file
software error featurecounts rna-seq rseqc written 7 weeks ago by popescuiofelia • 0 • updated 7 weeks ago by h.mon ♦ 21k
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featureCounts - how to make ATAC-seq cut-sites BAM
featurecounts bed files written 9 weeks ago by Lucy • 0 • updated 9 weeks ago by genomax ♦ 59k
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how specify feature type in featureCounts
featurecounts written 9 weeks ago by lkianmehr • 30 • updated 9 weeks ago by Macspider • 2.6k
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280
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 10 weeks ago by Biologist • 110 • updated 10 weeks ago by h.mon ♦ 21k
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featureCounts allowMultiOverlap - fractional or not?
featurecounts atac-seq written 10 weeks ago by Lucy • 0
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Annotating RNA-seq alignments to Unigene annotations- is it possible?
R alignment unigene featurecounts rna-seq written 2.7 years ago by legro.melanie • 0 • updated 11 weeks ago by RamRS ♦ 19k
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328
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featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 4 months ago by ewre • 210 • updated 11 weeks ago by Biostar ♦♦ 20
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Difference between two count table that created from same fastq files?
gtf tophat featurecounts rna-seq counttable written 3 months ago by cilgaiscan • 30 • updated 3 months ago by h.mon ♦ 21k
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featureCounts: 0% successfully assigned fragments on multiple PE .BAM files
featurecounts rsubread written 3 months ago by imesi • 20 • updated 3 months ago by genomax ♦ 59k
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331
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Error during running umi_tools
featurecounts umi_tools csamtools reference_name written 10 months ago by baffiak1902 • 10 • updated 3 months ago by smithtomsean • 140
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3
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329
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6 follow
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featureCounts and bash
featurecounts rna-seq bash written 3 months ago by cilgaiscan • 30 • updated 3 months ago by jkkim • 20
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5 follow
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How do you convert featureCounts output into composition of mapped reads by RNA class?
featurecounts deseq2 rna-seq written 4 months ago by 2405592M • 10
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390
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featureCounts output processing (command line)
command line featurecounts rna-seq written 4 months ago by 2405592M • 10 • updated 4 months ago by h.mon ♦ 21k
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259
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featureCounts fails to reorder BAM and duplicates read counts
featurecounts subread rna-seq written 5 months ago by samuel.marsh • 0 • updated 5 months ago by Devon Ryan ♦ 86k
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440
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featureCounts for aligned reads
rnaseq differential featurecounts de expression written 5 months ago by rsafavi • 40 • updated 5 months ago by genomax ♦ 59k
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622
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FeatureCounts summarizing at exon level
featurecounts rna-seq exon written 5 months ago by yamar • 0 • updated 5 months ago by dbpzdbpz • 90
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3
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382
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Genes with promoter and enhancer regions as GTF
gtf chip-seq genes featurecounts promoter written 6 months ago by hkarakurt • 30
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286
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1
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Differential gene expression results are different while using hg19 and hg38 genomic assembly
stringtie galaxy featurecounts cufflink rna-seq written 6 months ago by akilabioinfo • 0 • updated 6 months ago by Devon Ryan ♦ 86k
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432
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FeatureCounts fails to count fragments instead of reads
featurecounts fragment counting reads rna-seq written 7 months ago by Wietje • 170 • updated 7 months ago by JJ • 390
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351
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Alignment and Counting strandedness redundancy?
alignment featurecounts rna-seq strand hisat2 written 8 months ago by brismiller • 10 • updated 8 months ago by h.mon ♦ 21k
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534
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Is it possible to import a count table into MEGAN?
featurecounts rna-seq bwa megan written 14 months ago by victor.gambarini • 30 • updated 8 months ago by katerinapargana • 0
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Predicted gene differentially expressed in Kallisto, not in FeatureCounts
featurecounts kallisto written 8 months ago by Bastien Hervé • 2.6k • updated 8 months ago by h.mon ♦ 21k
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featureCounts/HTSeq-count problem with different annotation files
htseq-count featurecounts rna-seq written 3.1 years ago by monteiro.s.rita • 0 • updated 9 months ago by Biostar ♦♦ 20
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454
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1
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suggestions to compare gene counts
star-aligner featurecounts rna-seq written 10 months ago by b10hazard • 20 • updated 10 months ago by Charles Plessy • 2.6k
3
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1
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582
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featureCounts not recognizing paired-end alignment file.. why?
featurecounts rna-seq written 11 months ago by dec986 • 130
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