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<prev • 74 results • page 1 of 3 • next >
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miRna-Seq, featureCounts problem
mirbase featurecounts mirna written 10 days ago by AngAdd • 0 • updated 10 days ago by Buffo • 1.6k
2
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2
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100
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2
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44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped reads with STAR
alignment featurecounts star rna-seq written 13 days ago by garbuzov • 0
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1
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73
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1
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Transform BED file to SAF for featureCounts
featurecounts written 20 days ago by frida • 10 • updated 20 days ago by ATpoint ♦ 18k
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1
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How can I export featureCounts (Rsubread) results?
R featurecounts rsubread written 4.7 years ago by gustavoborin01 • 30 • updated 4 weeks ago by sivaranjanisk • 0
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213
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Error using feature counts with DESeq2 : Cannot create DESeqData object
deseq2 featurecounts rna-seq written 7 weeks ago by Cookie-san • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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2
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184
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6 follow
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mistakenly ran featureCounts in paired-end mode on single-read data
featurecounts rna-seq written 6 weeks ago by clboozy • 0 • updated 6 weeks ago by swbarnes2 ♦ 5.8k
6
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144
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Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 7 weeks ago by nanoide • 30 • updated 7 weeks ago by swbarnes2 ♦ 5.8k
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223
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 8 weeks ago by gwebste7 • 0 • updated 8 weeks ago by Michael Dondrup ♦ 46k
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3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 8 months ago by Biologist • 150 • updated 9 weeks ago by Ahmed Alhendi • 10
3
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0
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318
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0
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HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 12 weeks ago by bkinzep • 0 • updated 12 weeks ago by h.mon ♦ 26k
17
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1
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507
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1
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collapsing transcript expression to gene-level expression
featurecounts rna-seq bam written 3 months ago by F • 3.4k
2
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1
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346
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1
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Using featureCounts Output for DE analysis in edgeR
featurecounts rna-seq edger written 3 months ago by markm014 • 0 • updated 3 months ago by Friederike ♦ 4.2k
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233
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Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 3 months ago by raquelgarza95 • 40
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315
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Subread and featurecounts read index and annotation once for all
alignment featurecounts rna-seq written 6 months ago by bharata1803 • 420 • updated 4 months ago by Biostar ♦♦ 20
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1
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186
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1
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featurecounts flags for lncRNA and mRNA co-expression
co-expression featurecounts written 4 months ago by Sam • 110
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2
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256
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2
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The optimal minMQS parameter in featureCounts for RNA-Seq quantification
minmqs quantification featurecounts rna-seq written 4 months ago by Gary • 450 • updated 4 months ago by Gordon Smyth • 780
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473
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strandness of paired-end data
featurecounts rna-seq written 8 months ago by waqaskhokhar999 • 40 • updated 6 months ago by Biostar ♦♦ 20
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1
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350
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1
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How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
featurecounts rna-seq hisat2 written 6 months ago by bk11 • 30 • updated 6 months ago by kristoffer.vittingseerup • 1.8k
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1
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251
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1
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Strand specific in RNA-seq
featurecounts subread rna-seq written 6 months ago by swarajgaikwad15 • 0 • updated 6 months ago by caggtaagtat • 620
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2
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612
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5 follow
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How to open a .tabular file in R or excel?
tabular featurecounts rna-seq written 7 months ago by writetoroopali • 0
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1
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487
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1
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Problem with extracting read counts from RNA seq file
software error featurecounts rna-seq rseqc written 8 months ago by popescuiofelia • 10 • updated 8 months ago by h.mon ♦ 26k
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279
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featureCounts - how to make ATAC-seq cut-sites BAM
featurecounts bed files written 8 months ago by Lucy • 0 • updated 8 months ago by genomax ♦ 68k
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1
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697
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1
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how specify feature type in featureCounts
featurecounts written 8 months ago by lkianmehr • 30 • updated 8 months ago by Macspider • 2.8k
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featureCounts allowMultiOverlap - fractional or not?
featurecounts atac-seq written 8 months ago by Lucy • 0
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Annotating RNA-seq alignments to Unigene annotations- is it possible?
R alignment unigene featurecounts rna-seq written 3.2 years ago by legro.melanie • 0 • updated 9 months ago by RamRS ♦ 22k
2
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0
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698
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featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 10 months ago by ewre • 220 • updated 9 months ago by Biostar ♦♦ 20
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497
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Difference between two count table that created from same fastq files?
gtf tophat featurecounts rna-seq counttable written 9 months ago by cilgaiscan • 50 • updated 9 months ago by h.mon ♦ 26k
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1
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featureCounts: 0% successfully assigned fragments on multiple PE .BAM files
featurecounts rsubread written 9 months ago by imesi • 20 • updated 9 months ago by genomax ♦ 68k
1
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1
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493
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1
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Error during running umi_tools
featurecounts umi_tools csamtools reference_name written 17 months ago by baffiak1902 • 10 • updated 10 months ago by smithtomsean • 160
7
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3
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610
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6 follow
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featureCounts and bash
featurecounts rna-seq bash written 10 months ago by cilgaiscan • 50 • updated 10 months ago by jkkim • 30
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