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strandness of paired-end data
featurecounts rna-seq written 4 days ago by waqaskhokhar999 • 0 • updated 3 days ago by jrj.healey ♦ 7.5k
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47
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featureCounts - how to make ATAC-seq cut-sites BAM
featurecounts bed files written 13 days ago by Lucy • 0 • updated 13 days ago by genomax ♦ 57k
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1
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80
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1
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how specify feature type in featureCounts
featurecounts written 13 days ago by lkianmehr • 10 • updated 13 days ago by Macspider • 2.6k
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2
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132
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 17 days ago by Biologist • 80 • updated 17 days ago by h.mon ♦ 20k
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89
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featureCounts allowMultiOverlap - fractional or not?
featurecounts atac-seq written 20 days ago by Lucy • 0
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798
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Annotating RNA-seq alignments to Unigene annotations- is it possible?
R alignment unigene featurecounts rna-seq written 2.5 years ago by legro.melanie • 0 • updated 24 days ago by RamRS ♦ 18k
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222
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featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 11 weeks ago by ewre • 210 • updated 26 days ago by Biostar ♦♦ 20
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2
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246
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Difference between two count table that created from same fastq files?
gtf tophat featurecounts rna-seq counttable written 7 weeks ago by cilgaiscan • 30 • updated 7 weeks ago by h.mon ♦ 20k
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259
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featureCounts: 0% successfully assigned fragments on multiple PE .BAM files
featurecounts rsubread written 7 weeks ago by imesi • 20 • updated 7 weeks ago by genomax ♦ 57k
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1
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295
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1
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Error during running umi_tools
featurecounts umi_tools csamtools reference_name written 9 months ago by baffiak1902 • 10 • updated 8 weeks ago by smithtomsean • 130
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3
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255
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6 follow
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featureCounts and bash
featurecounts rna-seq bash written 9 weeks ago by cilgaiscan • 30 • updated 9 weeks ago by jkkim • 20
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1
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232
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5 follow
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How do you convert featureCounts output into composition of mapped reads by RNA class?
featurecounts deseq2 rna-seq written 10 weeks ago by 2405592M • 10
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267
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featureCounts output processing (command line)
command line featurecounts rna-seq written 12 weeks ago by 2405592M • 10 • updated 12 weeks ago by h.mon ♦ 20k
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194
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1
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featureCounts fails to reorder BAM and duplicates read counts
featurecounts subread rna-seq written 3 months ago by samuel.marsh • 0 • updated 3 months ago by Devon Ryan ♦ 85k
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1
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312
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1
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featureCounts for aligned reads
rnaseq differential featurecounts de expression written 3 months ago by rsafavi • 40 • updated 3 months ago by genomax ♦ 57k
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1
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412
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1
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FeatureCounts summarizing at exon level
featurecounts rna-seq exon written 4 months ago by yamar • 0 • updated 3 months ago by dbpzdbpz • 90
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3
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281
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3
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Genes with promoter and enhancer regions as GTF
gtf chip-seq genes featurecounts promoter written 4 months ago by hkarakurt • 30
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1
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245
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1
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Differential gene expression results are different while using hg19 and hg38 genomic assembly
stringtie galaxy featurecounts cufflink rna-seq written 4 months ago by akilabioinfo • 0 • updated 4 months ago by Devon Ryan ♦ 85k
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367
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1
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FeatureCounts fails to count fragments instead of reads
featurecounts fragment counting reads rna-seq written 6 months ago by Wietje • 150 • updated 6 months ago by JJ • 350
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1
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292
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1
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Alignment and Counting strandedness redundancy?
alignment featurecounts rna-seq strand hisat2 written 6 months ago by brismiller • 10 • updated 6 months ago by h.mon ♦ 20k
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489
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Is it possible to import a count table into MEGAN?
featurecounts rna-seq bwa megan written 13 months ago by victor.gambarini • 30 • updated 6 months ago by katerinapargana • 0
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1
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418
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1
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Predicted gene differentially expressed in Kallisto, not in FeatureCounts
featurecounts kallisto written 7 months ago by Bastien Hervé • 2.2k • updated 7 months ago by h.mon ♦ 20k
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1
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featureCounts/HTSeq-count problem with different annotation files
htseq-count featurecounts rna-seq written 3.0 years ago by monteiro.s.rita • 0 • updated 7 months ago by Biostar ♦♦ 20
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394
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1
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suggestions to compare gene counts
star-aligner featurecounts rna-seq written 8 months ago by b10hazard • 20 • updated 8 months ago by Charles Plessy • 2.5k
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1
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521
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1
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featureCounts not recognizing paired-end alignment file.. why?
featurecounts rna-seq written 9 months ago by dec986 • 130
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542
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Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
multi-overlap paired-end featurecounts single-end written 10 months ago by devikaparvathy • 20
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5 follow
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Read pair orientation : Illumina TruSeq Stranded mRNA library
featurecounts truseq strandspecific written 10 months ago by erwan.scaon • 570 • updated 10 months ago by igor ♦ 6.8k
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featureCounts for paired bam files and dealing with multimapping reads?
paired featurecounts rna-seq multimapping reads written 11 months ago by bioinfo8 • 90 • updated 11 months ago by Devon Ryan ♦ 85k
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747
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Warning when using gff format in featureCounts - miRNAs
featurecounts mirna raw counts written 11 months ago by MeiNB • 10
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1
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combining quantification (featureCounts) result files into a single dataset
matix featurecounts combine written 12 months ago by HK • 20 • updated 12 months ago by Devon Ryan ♦ 85k
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