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Question about featureCounts
featurecounts rna-seq written 15 days ago by chichaochen • 10
2
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1
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128
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1
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Difference between read counts STAR vs featureCounts
featurecounts star rna-seq multimapped written 19 days ago by sg197 • 10 • updated 19 days ago by h.mon ♦ 27k
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161
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featureCounts() in Rsubread freezes on gene_biotype as the meta-feature, command-line version doesn't
subread featurecounts rsubread rna-seq written 21 days ago by jirkanov • 0
1
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1
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77
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1
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Are single-end reads processed the same as paired-end reads regarding strandedness?
featurecounts strandedness single-end rna-seq written 20 days ago by sg197 • 10 • updated 20 days ago by ATpoint ♦ 24k
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96
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No reads assigned to bacterial genome with featureCounts (Rsubread)
R featurecounts rna-seq written 23 days ago by Mathias_H • 20
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2
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240
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2
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 11 weeks ago by ankuresearch • 10 • updated 8 weeks ago by swbarnes2 ♦ 6.7k
2
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141
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Can we make a counting program using GFF3 reference files?
rnaseq htseq-count featurecounts written 9 weeks ago by ino • 0
1
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136
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Problem in featureCounts file.
featurecounts rna-seq written 12 weeks ago by hafiz.talhamalik • 160 • updated 12 weeks ago by genomax ♦ 73k
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138
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Counting Ribo-seq data on gene and transcript level?
riboseq salmon featurecounts rna-seq written 3 months ago by BPors • 40
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391
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1
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FeatureCounts count reads per gene (Including Introns)
featurecounts rna-seq written 3 months ago by paulranum11 • 40
1
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2
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305
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2
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miRna-Seq, featureCounts problem
mirbase featurecounts mirna written 4 months ago by AngAdd • 0 • updated 4 months ago by Buffo • 1.7k
2
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2
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288
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2
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44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped reads with STAR
alignment featurecounts star rna-seq written 4 months ago by garbuzov • 10
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1
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285
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1
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Transform BED file to SAF for featureCounts
featurecounts written 4 months ago by Chironex • 20 • updated 4 months ago by ATpoint ♦ 24k
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How can I export featureCounts (Rsubread) results?
R featurecounts rsubread written 5.0 years ago by gustavoborin01 • 30 • updated 5 months ago by sivaranjanisk • 0
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449
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Error using feature counts with DESeq2 : Cannot create DESeqData object
deseq2 featurecounts rna-seq written 6 months ago by Cookie-san • 40 • updated 5 months ago by Biostar ♦♦ 20
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2
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367
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6 follow
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mistakenly ran featureCounts in paired-end mode on single-read data
featurecounts rna-seq written 5 months ago by clboozy • 0 • updated 5 months ago by swbarnes2 ♦ 6.7k
6
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2
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266
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Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 5 months ago by nanoide • 30 • updated 5 months ago by swbarnes2 ♦ 6.7k
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2
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377
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2
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 6 months ago by gwebste7 • 0 • updated 6 months ago by Michael Dondrup ♦ 46k
2
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3
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1.7k
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5 follow
3
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How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 13 months ago by Biologist • 180 • updated 6 months ago by Ahmed Alhendi • 30
3
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422
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HTSeq & featureCounts show no features
htseq alignment featurecounts rna-seq written 7 months ago by bkinzep • 0 • updated 7 months ago by h.mon ♦ 27k
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1
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722
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1
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collapsing transcript expression to gene-level expression
featurecounts rna-seq bam written 7 months ago by A • 3.5k
2
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1
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654
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1
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Using featureCounts Output for DE analysis in edgeR
featurecounts rna-seq edger written 8 months ago by markm014 • 0 • updated 8 months ago by Friederike ♦ 5.2k
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310
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Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 8 months ago by raquelgarza95 • 40
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440
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Subread and featurecounts read index and annotation once for all
alignment featurecounts rna-seq written 10 months ago by bharata1803 • 430 • updated 8 months ago by Biostar ♦♦ 20
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295
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1
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featurecounts flags for lncRNA and mRNA co-expression
co-expression featurecounts written 8 months ago by Sam • 130
5
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2
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423
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2
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The optimal minMQS parameter in featureCounts for RNA-Seq quantification
minmqs quantification featurecounts rna-seq written 8 months ago by Gary • 470 • updated 8 months ago by Gordon Smyth • 1.0k
0
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633
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strandness of paired-end data
featurecounts rna-seq written 12 months ago by waqaskhokhar999 • 80 • updated 10 months ago by Biostar ♦♦ 20
2
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1
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478
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1
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How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
featurecounts rna-seq hisat2 written 10 months ago by bk11 • 30 • updated 10 months ago by kristoffer.vittingseerup • 2.4k
2
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1
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364
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1
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Strand specific in RNA-seq
featurecounts subread rna-seq written 10 months ago by swarajgaikwad15 • 0 • updated 10 months ago by caggtaagtat • 810
0
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2
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973
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5 follow
2
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How to open a .tabular file in R or excel?
tabular featurecounts rna-seq written 11 months ago by writetoroopali • 0
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