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Recent Votes
- A: Kissplice2reftranscriptome error : IndexError
- A: Question about ChromHMM overlap enrichment
- C: Question about ChromHMM overlap enrichment
- C: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
- A: Code Golf: Mean Length Of Fasta Sequences
- C: basename: missing operand
- C: List of sequences to gene symbol
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Recent Replies
-
C: Is it possible to detect lncRNA in a de novo assembled genome? by
Sishuo Wang • 170
Yes, if those transcripts are long enough and do not have any coding potential.
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A: Kissplice2refgenome does not handle # in the very begining of GTF files by
vincent.lacroix • 90
Dear Thibault, Sorry for answering so late to this post, but yes this issue was corrected a long...
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C: Quantify expression from CAGE data by
ATpoint ♦ 19k
You should state in which format you have the data. Fastq, Bam, count matrix...
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C: rnaseqcomp for own data withoutref genes by
ATpoint ♦ 19k
Not helping with your question but you better compare recent tools such as kallisto to salmon rat...
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C: Biological replicates and depth seq by
ATpoint ♦ 19k
Any idea why these two "groups" exist, is this maybe a strong batch effect? This cannot be all ba...
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A: Kissplice2reftranscriptome error : IndexError by
vincent.lacroix • 90
Dear user, This bug should now be solved with version 1.3.3 of k2rt available here: http://kissp...
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A: VCF merge or concatenate? by
harish • 200
Bcftools does this, but is much faster than vcftools. You have one sample, but the data is split...
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C: basename: missing operand by
Carambakaracho • 1.4k
Check `echo ${INPUT_FILE_ONE}`, if that's what you expected the pipe to sed is not needed and `.s...
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C: Genomic coordinates from GENCODE annotation file by
husensofteng • 110
although it is late, but I just wanted to point your attention to the genome build for the varian...
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C: Regarding getting gene count tables for DeSeq from StringTie using prepDE.py by
kousi31 • 0
Hi, Did you find an answer for this question?
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C: List of sequences to gene symbol by
catechize.2.learn • 80
Thank you @genomax.
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C: Effect size in power analysis when dealing with Poisson based variant caller by
CY • 370
I will have to give up detecting somatic variant with very low frequency (<1%) since matched n...
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