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How can I use featurecounts after generating a bam file using BWA?

rna-seq features counts written 21 months ago by a.rex • 250 • updated 21 months ago by h.mon ♦ 31k

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Recent Replies

A: How can I get the uncompressed size of a BGZIP file ? by John Marshall ♦ 2.1k
Each block of a BGZF file is itself a valid GZIP file. So you can calculate the overall uncompres...
A: Split and recombine columns with R by Sissi • 50
Oh sorry. I edited the previous post. That's one column (called COG_CATEGORY) of a CSV file with ...
A: Split and recombine columns with R by Sissi • 50
Oh sorry. I edited the previous post. That's one column (called COG_CATEGORY) of a CSV file with ...
C: CNV data from Illumina OncoArray Cheap analysis by melania 2282 • 90
Thank you very much bernatgel
C: How can I get the uncompressed size of a BGZIP file ? by jukka.matilainen • 0
Unfortunately I am not that familiar with the tabix tbi file format. The format is documented [he...
C: How can I get the uncompressed size of a BGZIP file ? by sacha • 2.0k
Ok ! I am asking because tbi is more common than gzi. So, I wonder if I can get this information...
C: How can I get the uncompressed size of a BGZIP file ? by jukka.matilainen • 0
No, a gzi index file is in a different format than a tbi tabix index file. The gzi file is produc...
C: How to reproduce a stacked bar chart in R by bioinformatics2020 • 390
Ah, you don't have to! That portion of the code when I type the cell_types and colors (scale_fill...
C: How to reproduce a stacked bar chart in R by deathmagnetic20 • 10
Yes with my low code level, sorry! I meant I dont know how to include all the barcodes and cell ...
C: How can I get the uncompressed size of a BGZIP file ? by sacha • 2.0k
Is gzi same as tbi index ?
C: RNAseq bad PCA, a differential expression analysis killer ? by Dunois • 160
[@Devon Ryan](https://www.biostars.org/u/7403/) I apologize for necro'ing a 3 year old comment of...
C: How to reproduce a stacked bar chart in R by bioinformatics2020 • 390
What's challenging about it?

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