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Answer: Can you suggest any journal without any publication fee for publishing microbiol
by
Mensur Dlakic
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10k
- https://www.journals.elsevier.com/journal-of-molecular-biology
- https://academic.oup.com/bioinformatics (must stay within a page limi…
Answer: How to get all microRNA target genes?
by
i.sudbery
11k
For the purposes of `multimir` "validated" can include any interaction supported by CLASH/PAR-CLIP/AGO-CLIP data. In this case I'm surprise…
Comment: vcftools intersect vs bedtools intersect
by
gpen
•
0
Hello Alex,
Bedops looks like a great tool thank you for the suggestion. Why do you opt for the --element-of arg you shared over --inte…
Comment: How to extract sequences from fasta that have a certain length ?
by
GenoMax
99k
That is fine. People can find these solutions via search in future in one spot.
Comment: How to extract sequences from fasta that have a certain length ?
by
v.berriosfarias
▴
10
THanks so much for your answer, what I need is to make a new fasta that have sequences that have a length range between 50-100. those links…
Comment: What to put in my Github
by
Ram
32k
I prefer `source('~/MyRScripts/myscript.R')` to creating a package and loading it every time. Of course, one should only store reusable cod…
Answer: How to extract sequences from fasta that have a certain length ?
by
GenoMax
99k
See solutions in: https://www.biostars.org/p/79202/<br>
https://www.biostars.org/p/329680/<br>
https://stackoverflow.com/questions/62066578…
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴
10
Is it possible that I can compare it using just the stimuli within my colData matrix?
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴
10
I have had problems with using an interaction term between stimulus and timepoint that was not able to run as well. How can I fix that? I w…
Comment: What Coverage allele-fraction threshold to use?
by
kristina.mahan
▴
130
The sequencing coverage is >200x
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
swbarnes2
9.7k
I don't think you need the "1" in the design; I've never seen that in any DESeq tutorial.
What your design will do is compare the betas …
Comment: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴
10
![Here is my ColData][1]
[1]: /media/images/f2f1b815-3669-4525-9636-c6dc193e
Answer: How to highlight DE genes in plotMD ?
by
raulgcova97
•
0
Hi
I managed to **add DE tags to the plotMD** using the code I published on Kaggle:
[Kaggle DE analysis][1]
Here is an example of the co…
Comment: transcription factor activation order
by
ATpoint
47k
Calculating statistics, be it Z- or whatever score, is still based on some kind of data, and I wonder whether it is motifs or actual bindin…
Comment: What to put in my Github
by
ATpoint
47k
Seconding that. I strongly encourage everyone to wrap commonly used code and functions as simple packages and put them on Github. This allo…
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