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<prev • 101 results • page 1 of 4 • next >
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high frequency SNPs (and other variations) after subtracting blood variants from tumor ones
exome snp filtering frequencies written 4 days ago by gab • 0 • updated 4 days ago by Chris Miller ♦ 20k
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131
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Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
qc fastp filtering tool written 16 days ago by chen • 1.6k • updated 9 days ago by lena1graham • 0
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65
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 15 days ago by stefanos.bamopoulos • 30
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65
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State of processing in ENA, metaHIT samples
metahit filtering ena written 4 weeks ago by CAnna • 0
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1
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Allele Depth (AD) / Allele Balance (AB) Filtering in GATK 4
gatk allele depth filtering sequencing written 6 weeks ago by maegsul • 110 • updated 6 weeks ago by Pierre Lindenbaum ♦ 110k
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No QD scores on 10% of observations in VCF?
vcf gatk qd filtering written 8 weeks ago by miles.thorburn • 10
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Filter reversed rows in a dataframe (pandas)
python pandas filtering written 10 weeks ago by Toto26 • 10
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1
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131
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 10 weeks ago by angelaparody • 20 • updated 10 weeks ago by JC ♦ 6.8k
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179
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What stage of pre-processing in EBI data?
preprocessing raw data filtering written 3 months ago by CAnna • 0
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Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcf-tools filtering variants written 4 months ago by fwuffy • 50
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How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using BCFTools,CYVCF2 or Excel
vcf R snp filtering written 4 months ago by William • 4.2k • updated 4 months ago by Sean Davis ♦ 24k
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162
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GO annotation filtering for BP
go filtering functional annotation written 5 months ago by lessismore • 490 • updated 5 months ago by lieven.sterck • 1.9k
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3
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7 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 6 months ago by fhsantanna • 410
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Filtering lowly expressed genes - edgeR
R filtering rna-seq edger written 6 months ago by noeD • 70 • updated 6 months ago by Santosh Anand • 3.5k
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How to get GQX annotation in vcf file
snp filtering written 6 months ago by Clare • 120
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Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 2.2 years ago by chen • 1.6k • updated 6 months ago by zhimenggan • 0
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5 follow
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 6 months ago by niutster • 70 • updated 6 months ago by Kevin Blighe ♦ 24k
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SnpSift doesn't show any VariantType for filtering
snpsift snpeff filtering mutations written 7 months ago by Bioinfo • 220 • updated 6 months ago by Biostar ♦♦ 20
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Understanding implications of DP4/Strand Bias in Bacterial VCF files
vcf snp dp4 strand bias filtering written 23 months ago by f2369583 • 10 • updated 6 months ago by Kevin Blighe ♦ 24k
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 23 months ago by mmagoo6 • 50 • updated 7 months ago by shraddha.pai • 0
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Filtering variants in case-control DNA-seq study
genome dna-seq filtering written 8 months ago by YanO • 120
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Forum: User Friendly VCF Filtering Tools
variant calling vcf forum filtering written 2.1 years ago by andrew.j.skelton73 ♦ 5.1k
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3
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5 follow
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Understanding terms, specifically relating to GT:PL in a VCF file
sense variant antisense filtering terms written 8 months ago by rightmirem • 50 • updated 8 months ago by Kevin Blighe ♦ 24k
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1
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567
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Removing common SNPs from a set of VCF files
vcf snp filtering written 9 months ago by Lina F • 150
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1
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494
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1
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GATK filtering console error
gatk snp tool filtering linux written 9 months ago by makarenko100 • 10 • updated 9 months ago by Pierre Lindenbaum ♦ 110k
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1
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512
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Filter VCF with txt
vcf snp filtering written 9 months ago by leeandroid • 80 • updated 9 months ago by Alex Reynolds ♦ 24k
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4
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5 follow
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Selecting genes that best separate between two groups
ttest feature selection limma filtering rna-seq written 10 months ago by lirongrossmann • 20
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Filtering in DNA methylation
dna methylation preprocessing filtering written 10 months ago by noorpratap.singh • 110 • updated 10 months ago by Kevin Blighe ♦ 24k
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How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignment?
freebayes snp filtering written 10 months ago by Lina F • 150
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6 follow
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 11 months ago by Anand Rao • 150
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