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<prev • 132 results • page 1 of 5 • next >
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Low mean of read depth - filtering SNP in VCF file
vcf snp filtering written 4 days ago by Trevorsky • 0 • updated 4 days ago by joneill4x • 40
0
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1
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133
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1
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Filtering for individual allelic balance in multisample vcf using GATK4
vcf gatk gatk4 filtering written 18 days ago by mernster • 0 • updated 17 days ago by chrchang523 ♦ 5.7k
1
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1
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85
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1
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Not enough SNPs after filtering an imputed dataset
snp impute filtering qctool variants written 26 days ago by Max • 10
3
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0
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160
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Error: Bad BCF record - shared section malformed or too short after vcftools filtering
vcf bcf filtering snp written 5 weeks ago by yvanpapa • 0
2
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1
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770
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1
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 18 months ago by angelaparody • 40 • updated 6 weeks ago by Biostar ♦♦ 20
2
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0
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171
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Samtools fastq returns less unmapped than flagstat
ngs alignment samtools filtering written 10 weeks ago by ciemanek • 130 • updated 7 weeks ago by Biostar ♦♦ 20
0
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164
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Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2 rna-seq filtering written 12 weeks ago by Mozart • 140
2
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1
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270
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1
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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 3 months ago by Jurat Shahidin • 80
0
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195
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 3 months ago by Mari • 0
7
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1
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267
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1
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what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 4 months ago by Jurat Shahidin • 80
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0
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170
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0
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Filtering for Percentage of identity (sequence identity: pident, %) from tblastn results
sequence pident blast filtering tblastn written 4 months ago by endretoth • 0
0
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1
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148
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1
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 4 months ago by kittys • 0 • updated 4 months ago by Nicolas Rosewick ♦ 8.3k
1
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0
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267
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0
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Filtering VCF file
vcf snp filtering written 6 months ago by Prakki Rama • 2.3k • updated 5 months ago by Biostar ♦♦ 20
6
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1
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247
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1
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Bbduk filters away good reads
preprocessing next-gen quality control filtering written 6 months ago by dt • 30
0
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0
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277
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0
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 6 months ago by jon.klonowski • 40 • updated 6 months ago by Biostar ♦♦ 20
5
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1
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634
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1
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 6 months ago by newbie • 70 • updated 6 months ago by Prakash • 1.7k
0
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378
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Calculate individual missingness in vcf NOT using VCFtools
rad-seq snp filtering polyploid written 6 months ago by evan.hersh • 0
7
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2
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2.0k
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6 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 15 months ago by hewaholax • 0 • updated 7 months ago by Biostar ♦♦ 20
9
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3
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3.0k
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8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 22 months ago by fhsantanna • 440 • updated 7 months ago by bhclement • 0
0
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1
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863
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1
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 8 months ago by ignazio.fontana • 0
1
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1
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456
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1
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Are the somatic mutations in TCGA filtered for germline mutations?
tcga mutations filtering written 9 months ago by rafi.zon • 10 • updated 9 months ago by markus.riester • 480
19
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1
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718
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5 follow
1
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Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the state of the art)
blacklist chip-seq filtering written 9 months ago by msimmer92 • 210 • updated 9 months ago by Devon Ryan ♦ 92k
0
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1
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409
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1
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Filtering SCRNAseq dataset
rna-seq filtering written 9 months ago by kanwarjag • 1.0k • updated 9 months ago by geek_y ♦ 10.0k
8
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1
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1.1k
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1
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Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 11 months ago by msimmer92 • 210
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403
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Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 10 months ago by oselm • 30
3
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1
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410
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1
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Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 10 months ago by miles.thorburn • 90
0
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0
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390
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0
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How to filter out mouse cells to from a mixture library (mouse and human cells) by cellranger?
mix library scrna filtering written 10 months ago by mzhoufulai • 0
3
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1
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802
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1
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Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 12 months ago by ovon • 20 • updated 12 months ago by finswimmer ♦ 12k
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407
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0
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cd-hit-est total seq value doesn't match number of sequences being compared?
cd-hit-est metagenomics binning filtering cd-hit written 12 months ago by c.e.chong • 20
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Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering written 6.0 years ago by Tonyzeng • 300 • updated 12 months ago by Shicheng Guo • 7.8k
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