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<prev • 108 results • page 1 of 4 • next >
3
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115
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Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 13 days ago by ovon • 20 • updated 13 days ago by finswimmer ♦ 6.7k
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108
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cd-hit-est total seq value doesn't match number of sequences being compared?
cd-hit-est metagenomics binning filtering cd-hit written 15 days ago by c.e.chong • 0
0
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1
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1.3k
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1
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Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering written 5.0 years ago by Tonyzeng • 300 • updated 21 days ago by Shicheng Guo • 7.0k
1
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125
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How to filter VCF with HRun > 8 and AB > 0.2 and AB < 0.2
vcf filtering written 5 weeks ago by pegeot.henri • 0
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0
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149
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0
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Filtering results difference amongst VCF files
gatk snp filtering variants written 5 weeks ago by prasundutta87 • 260
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120
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 5 weeks ago by g.e.novakovsky • 20
4
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1
answer
108
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1
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absence of gene symbol when selecting "most severe consequence" in VEP
variant effect predictor filtering written 6 weeks ago by nazaninhoseinkhan • 340 • updated 6 weeks ago by Emily_Ensembl ♦ 16k
0
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0
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223
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 4 months ago by stefanos.bamopoulos • 30 • updated 9 weeks ago by Biostar ♦♦ 20
6
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5
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4.5k
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5
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.3 years ago by mmagoo6 • 50 • updated 11 weeks ago by natalia.han • 0
0
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1
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343
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1
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How to get GQX annotation in vcf file
snp filtering written 10 months ago by Clare • 120 • updated 3 months ago by Kevin Blighe ♦ 32k
5
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1
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285
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1
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how to extract unique variants from GVCF
gatk variant-calling filtering gvcf written 3 months ago by harold.smith.tarheel • 4.2k • updated 3 months ago by Pierre Lindenbaum ♦ 114k
7
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2
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336
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5 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 3 months ago by hewaholax • 0 • updated 3 months ago by a.zielezinski ♦ 8.5k
1
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1
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158
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1
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high frequency SNPs (and other variations) after subtracting blood variants from tumor ones
exome snp filtering frequencies written 4 months ago by gab • 20 • updated 4 months ago by Chris Miller ♦ 20k
6
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0
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481
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Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
qc fastp filtering tool written 4 months ago by chen • 1.7k • updated 4 months ago by lena1graham • 0
0
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1
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137
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1
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State of processing in ENA, metaHIT samples
metahit filtering ena written 4 months ago by CAnna • 0
8
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1
answer
779
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1
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Allele Depth (AD) / Allele Balance (AB) Filtering in GATK 4
gatk allele depth filtering sequencing written 5 months ago by maegsul • 110 • updated 5 months ago by Pierre Lindenbaum ♦ 114k
0
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0
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188
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0
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No QD scores on 10% of observations in VCF?
vcf gatk qd filtering written 5 months ago by miles.thorburn • 10
0
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171
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0
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Filter reversed rows in a dataframe (pandas)
python pandas filtering written 6 months ago by Toto26 • 10
0
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1
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310
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1
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 6 months ago by angelaparody • 20 • updated 6 months ago by JC ♦ 6.9k
1
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0
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253
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0
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What stage of pre-processing in EBI data?
preprocessing raw data filtering written 7 months ago by CAnna • 0
2
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456
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Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcf-tools filtering variants written 7 months ago by fwuffy • 50
4
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1
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510
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1
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How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using BCFTools,CYVCF2 or Excel
vcf R snp filtering written 8 months ago by William • 4.3k • updated 8 months ago by Sean Davis ♦ 25k
1
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1
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219
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1
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GO annotation filtering for BP
go filtering functional annotation written 9 months ago by lessismore • 520 • updated 9 months ago by lieven.sterck • 3.1k
8
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3
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1.3k
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7 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 10 months ago by fhsantanna • 410
1
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1
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515
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1
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Filtering lowly expressed genes - edgeR
R filtering rna-seq edger written 9 months ago by noeD • 70 • updated 9 months ago by Santosh Anand • 4.0k
19
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4
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3.6k
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4
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Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 2.5 years ago by chen • 1.7k • updated 10 months ago by zhimenggan • 0
5
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1
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5 follow
1
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 10 months ago by niutster • 80 • updated 10 months ago by Kevin Blighe ♦ 32k
0
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0
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554
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0
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SnpSift doesn't show any VariantType for filtering
snpsift snpeff filtering mutations written 11 months ago by Bioinfo • 270 • updated 10 months ago by Biostar ♦♦ 20
0
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1
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818
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1
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Understanding implications of DP4/Strand Bias in Bacterial VCF files
vcf snp dp4 strand bias filtering written 2.3 years ago by f2369583 • 10 • updated 10 months ago by Kevin Blighe ♦ 32k
0
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0
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428
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0
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Filtering variants in case-control DNA-seq study
genome dna-seq filtering written 12 months ago by YanO • 120
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