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<prev • 145 results • page 1 of 5 • next >
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Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2 rna-seq filtering written 11 months ago by Mozart • 200
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78
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Evaluating RMSMappingQuality profile to set threshold
variant calling gatk snp filtering written 8 weeks ago by serpalma.v • 40 • updated 8 weeks ago by Nicolas Rosewick ♦ 8.9k
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106
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How can I filter RNA-seq reads to remove reads where more than 50% of the read is low quality (Q<20)?
genome quality rna-seq filtering written 10 weeks ago by mar77 • 0
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How to filter out mouse cells to from a mixture library (mouse and human cells) by cellranger?
mix library scrna filtering written 19 months ago by mzhoufulai • 0 • updated 11 weeks ago by swbarnes2 ♦ 8.1k
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143
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ReadPosRankSum annotation error (gatk4)
gatk variants readposranksum filtering vqsr written 3 months ago by Cricket • 10
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149
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Structural variant filtering
structural variant filtering written 3 months ago by dominique.massau • 0
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222
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filtering unmapped and multiple mapped reads
smatools filtering rna-seq written 4 months ago by annaA • 10
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227
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What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 4 months ago by Gabriel • 60
2
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196
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How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 6 months ago by nanoide • 50 • updated 4 months ago by Biostar ♦♦ 20
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208
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How to get Positive Control gut or Vaginal microbiome dataset
positive control decontamination filtering written 6 months ago by eli_bayat • 20 • updated 4 months ago by Biostar ♦♦ 20
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187
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How to create a bed file from a fasta containing all regions with clusters of >= 50 Ns and flanking 1kb regions
genome bed filtering fasta written 4 months ago by Rubal • 330 • updated 4 months ago by ATpoint ♦ 36k
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212
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ADMIXTURE optimal k depends on filters?
snp admixture plink filtering cross-validation written 6 months ago by RvV • 0
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140
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Application of empty blast result
blast filtering empty written 6 months ago by marongiu.luigi • 520
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190
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Understanding variants that PASS filter but are also flagged?
filtering written 6 months ago by rthomas • 10
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140
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Eliminating panel mutations based on coverage of PoN
gatk filtering written 6 months ago by vctrm67 • 10
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475
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 12 months ago by Mari • 0 • updated 7 months ago by Biostar ♦♦ 20
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800
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 15 months ago by jon.klonowski • 70 • updated 8 months ago by cricgpu • 0
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216
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1
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Low mean of read depth - filtering SNP in VCF file
vcf snp filtering written 9 months ago by Trevorsky • 0 • updated 9 months ago by joneill4x • 100
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1
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403
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1
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Filtering for individual allelic balance in multisample vcf using GATK4
vcf gatk gatk4 filtering written 9 months ago by mernster • 0 • updated 9 months ago by chrchang523 ♦ 7.1k
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1
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245
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1
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Not enough SNPs after filtering an imputed dataset
snp impute filtering qctool variants written 9 months ago by Max • 20
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431
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Error: Bad BCF record - shared section malformed or too short after vcftools filtering
vcf bcf filtering snp written 10 months ago by yvanpapa • 0
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 2.2 years ago by angelaparody • 60 • updated 10 months ago by Biostar ♦♦ 20
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381
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Samtools fastq returns less unmapped than flagstat
ngs alignment samtools filtering written 11 months ago by ciemanek • 140 • updated 10 months ago by Biostar ♦♦ 20
2
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1
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572
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1
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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 12 months ago by Jurat Shahidin • 80
7
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1
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538
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1
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what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 13 months ago by Jurat Shahidin • 80
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394
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Filtering for Percentage of identity (sequence identity: pident, %) from tblastn results
sequence pident blast filtering tblastn written 13 months ago by endretoth • 20
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371
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 13 months ago by kittys • 0 • updated 13 months ago by Nicolas Rosewick ♦ 8.9k
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414
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Filtering VCF file
vcf snp filtering written 15 months ago by Prakki Rama • 2.4k • updated 14 months ago by Biostar ♦♦ 20
6
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1
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366
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1
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Bbduk filters away good reads
preprocessing next-gen quality control filtering written 14 months ago by dt • 30
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 15 months ago by newbie • 70 • updated 15 months ago by Prakash • 1.9k
<prev • 145 results • page 1 of 5 • next >
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