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How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 7 weeks ago by nanoide40 • updated 4 days ago by Biostar ♦♦ 20
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 11 months ago by jon.klonowski70 • updated 4 months ago by cricgpu0
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Low mean of read depth - filtering SNP in VCF file
vcf snp filtering written 4 months ago by Trevorsky0 • updated 4 months ago by joneill4x70
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Filtering for individual allelic balance in multisample vcf using GATK4
vcf gatk gatk4 filtering written 5 months ago by mernster0 • updated 5 months ago by chrchang5236.6k
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 23 months ago by angelaparody50 • updated 6 months ago by Biostar ♦♦ 20
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Samtools fastq returns less unmapped than flagstat
ngs alignment samtools filtering written 7 months ago by ciemanek130 • updated 6 months ago by Biostar ♦♦ 20
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 9 months ago by kittys0 • updated 9 months ago by Nicolas Rosewick8.7k
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Filtering VCF file
vcf snp filtering written 11 months ago by Prakki Rama2.4k • updated 10 months ago by Biostar ♦♦ 20
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 11 months ago by newbie70 • updated 11 months ago by Prakash1.8k
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 20 months ago by hewaholax0 • updated 11 months ago by Biostar ♦♦ 20
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 2.2 years ago by fhsantanna470 • updated 12 months ago by bhclement0
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Are the somatic mutations in TCGA filtered for germline mutations?
tcga mutations filtering written 13 months ago by rafi.zon10 • updated 13 months ago by markus.riester490
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Filtering SCRNAseq dataset
rna-seq filtering written 14 months ago by kanwarjag1.0k • updated 14 months ago by geek_y10k
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