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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 9 hours ago by Jurat Shahidin • 80
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1
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148
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what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 21 days ago by Jurat Shahidin • 80
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Filtering for Percentage of identity (sequence identity: pident, %) from tblastn results
sequence pident blast filtering tblastn written 4 weeks ago by endretoth • 0
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1
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77
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1
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 4 weeks ago by kittys • 0 • updated 4 weeks ago by Nicolas Rosewick ♦ 7.9k
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202
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Filtering VCF file
vcf snp filtering written 3 months ago by Prakki Rama • 2.3k • updated 7 weeks ago by Biostar ♦♦ 20
6
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1
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164
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1
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Bbduk filters away good reads
preprocessing next-gen quality control filtering written 9 weeks ago by dt • 30
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163
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 3 months ago by jon.klonowski • 30 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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315
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1
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 11 weeks ago by newbie • 50 • updated 11 weeks ago by Prakash • 1.3k
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244
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Calculate individual missingness in vcf NOT using VCFtools
rad-seq snp filtering polyploid written 3 months ago by evan.hersh • 0
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6 follow
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 12 months ago by hewaholax • 0 • updated 3 months ago by Biostar ♦♦ 20
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8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 18 months ago by fhsantanna • 440 • updated 4 months ago by bhclement • 0
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1
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467
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1
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 4 months ago by ignazio.fontana • 0
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333
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1
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Are the somatic mutations in TCGA filtered for germline mutations?
tcga mutations filtering written 5 months ago by rafi.zon • 10 • updated 5 months ago by markus.riester • 480
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1
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408
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5 follow
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Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the state of the art)
blacklist chip-seq filtering written 5 months ago by msimmer92 • 200 • updated 5 months ago by Devon Ryan ♦ 91k
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279
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1
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Filtering SCRNAseq dataset
rna-seq filtering written 5 months ago by kanwarjag • 970 • updated 5 months ago by geek_y ♦ 9.8k
7
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1
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695
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1
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Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 8 months ago by msimmer92 • 200
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316
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0
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Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 6 months ago by oselm • 30
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1
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304
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1
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Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 6 months ago by miles.thorburn • 80
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263
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How to filter out mouse cells to from a mixture library (mouse and human cells) by cellranger?
mix library scrna filtering written 6 months ago by mzhoufulai • 0
3
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1
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517
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1
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Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 8 months ago by ovon • 20 • updated 8 months ago by finswimmer ♦ 11k
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336
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cd-hit-est total seq value doesn't match number of sequences being compared?
cd-hit-est metagenomics binning filtering cd-hit written 8 months ago by c.e.chong • 10
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Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering written 5.7 years ago by Tonyzeng • 300 • updated 9 months ago by Shicheng Guo • 7.6k
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325
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How to filter VCF with HRun > 8 and AB > 0.2 and AB < 0.2
vcf filtering written 9 months ago by pegeot.henri • 0
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445
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Filtering results difference amongst VCF files
gatk snp filtering variants written 9 months ago by prasundutta87 • 330
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367
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scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 9 months ago by chipolino • 40
4
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1
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273
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1
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absence of gene symbol when selecting "most severe consequence" in VEP
variant effect predictor filtering written 9 months ago by nazaninhoseinkhan • 360 • updated 9 months ago by Emily_Ensembl ♦ 18k
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439
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 12 months ago by stefanos.bamopoulos • 30 • updated 10 months ago by Biostar ♦♦ 20
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5
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5.8k
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5
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.9 years ago by mmagoo6 • 50 • updated 11 months ago by natalia.han • 0
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How to get GQX annotation in vcf file
snp filtering written 18 months ago by Clare • 130 • updated 11 months ago by Kevin Blighe ♦ 45k
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564
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how to extract unique variants from GVCF
gatk variant-calling filtering gvcf written 11 months ago by harold.smith.tarheel • 4.4k • updated 11 months ago by Pierre Lindenbaum ♦ 121k
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