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Evaluating RMSMappingQuality profile to set threshold
variant calling gatk snp filtering written 8 weeks ago by serpalma.v40 • updated 8 weeks ago by Nicolas Rosewick8.9k
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How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 6 months ago by nanoide50 • updated 4 months ago by Biostar ♦♦ 20
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 15 months ago by jon.klonowski70 • updated 8 months ago by cricgpu0
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Low mean of read depth - filtering SNP in VCF file
vcf snp filtering written 9 months ago by Trevorsky0 • updated 9 months ago by joneill4x100
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Filtering for individual allelic balance in multisample vcf using GATK4
vcf gatk gatk4 filtering written 9 months ago by mernster0 • updated 9 months ago by chrchang5237.1k
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 2.2 years ago by angelaparody60 • updated 10 months ago by Biostar ♦♦ 20
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Samtools fastq returns less unmapped than flagstat
ngs alignment samtools filtering written 11 months ago by ciemanek140 • updated 10 months ago by Biostar ♦♦ 20
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How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 13 months ago by kittys0 • updated 13 months ago by Nicolas Rosewick8.9k
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Filtering VCF file
vcf snp filtering written 15 months ago by Prakki Rama2.4k • updated 14 months ago by Biostar ♦♦ 20
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 15 months ago by newbie70 • updated 15 months ago by Prakash1.9k
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