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<prev • 116 results • page 1 of 4 • next >
9
votes
3
answers
2.0k
views
8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 14 months ago by fhsantanna • 440 • updated 1 day ago by bhclement • 0
0
votes
1
answer
95
views
1
answer
Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 9 days ago by ignazio.fontana • 0
1
vote
1
answer
150
views
1
answer
Are the somatic mutations in TCGA filtered for germline mutations?
tcga mutations filtering written 5 weeks ago by rafi.zon • 10 • updated 5 weeks ago by markus.riester • 320
14
votes
1
answer
191
views
1
answer
Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the state of the art)
blacklist chip-seq filtering written 7 weeks ago by msimmer92 • 150 • updated 7 weeks ago by Devon Ryan ♦ 88k
0
votes
1
answer
122
views
1
answer
Filtering SCRNAseq dataset
rna-seq filtering written 7 weeks ago by kanwarjag • 930 • updated 7 weeks ago by geek_y ♦ 9.3k
7
votes
1
answer
331
views
1
answer
Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 3 months ago by msimmer92 • 150
0
votes
0
answers
197
views
0
answers
Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 11 weeks ago by oselm • 30
3
votes
1
answer
199
views
1
answer
Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 11 weeks ago by miles.thorburn • 80
0
votes
0
answers
153
views
0
answers
How to filter out mouse cells to from a mixture library (mouse and human cells) by cellranger?
mix library scrna filtering written 12 weeks ago by mzhoufulai • 0
3
votes
1
answer
299
views
1
answer
Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 4 months ago by ovon • 20 • updated 4 months ago by finswimmer ♦ 11k
0
votes
0
answers
225
views
0
answers
cd-hit-est total seq value doesn't match number of sequences being compared?
cd-hit-est metagenomics binning filtering cd-hit written 4 months ago by c.e.chong • 10
0
votes
1
answer
1.4k
views
1
answer
Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering written 5.4 years ago by Tonyzeng • 300 • updated 4 months ago by Shicheng Guo • 7.4k
1
vote
0
answers
233
views
0
answers
How to filter VCF with HRun > 8 and AB > 0.2 and AB < 0.2
vcf filtering written 5 months ago by pegeot.henri • 0
0
votes
0
answers
316
views
0
answers
Filtering results difference amongst VCF files
gatk snp filtering variants written 5 months ago by prasundutta87 • 330
0
votes
0
answers
241
views
0
answers
scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 5 months ago by g.e.novakovsky • 20
4
votes
1
answer
179
views
1
answer
absence of gene symbol when selecting "most severe consequence" in VEP
variant effect predictor filtering written 5 months ago by nazaninhoseinkhan • 360 • updated 5 months ago by Emily_Ensembl ♦ 17k
0
votes
0
answers
334
views
0
answers
Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 8 months ago by stefanos.bamopoulos • 30 • updated 6 months ago by Biostar ♦♦ 20
6
votes
5
answers
5.2k
views
5
answers
Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.6 years ago by mmagoo6 • 50 • updated 7 months ago by natalia.han • 0
0
votes
1
answer
461
views
1
answer
How to get GQX annotation in vcf file
snp filtering written 14 months ago by Clare • 120 • updated 7 months ago by Kevin Blighe ♦ 39k
5
votes
1
answer
422
views
1
answer
how to extract unique variants from GVCF
gatk variant-calling filtering gvcf written 7 months ago by harold.smith.tarheel • 4.3k • updated 7 months ago by Pierre Lindenbaum ♦ 118k
7
votes
2
answers
820
views
6 follow
2
answers
Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 8 months ago by hewaholax • 0 • updated 7 months ago by a.zielezinski ♦ 8.6k
1
vote
1
answer
234
views
1
answer
high frequency SNPs (and other variations) after subtracting blood variants from tumor ones
exome snp filtering frequencies written 8 months ago by gab • 20 • updated 8 months ago by Chris Miller ♦ 20k
8
votes
0
answers
790
views
0
answers
Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
qc fastp filtering tool written 8 months ago by chen • 1.8k • updated 8 months ago by lena1graham • 0
0
votes
1
answer
213
views
1
answer
State of processing in ENA, metaHIT samples
metahit filtering ena written 9 months ago by CAnna • 10
8
votes
1
answer
1.3k
views
1
answer
Allele Depth (AD) / Allele Balance (AB) Filtering in GATK 4
gatk allele depth filtering sequencing written 9 months ago by maegsul • 130 • updated 9 months ago by Pierre Lindenbaum ♦ 118k
0
votes
0
answers
282
views
0
answers
No QD scores on 10% of observations in VCF?
vcf gatk qd filtering written 10 months ago by miles.thorburn • 80
0
votes
0
answers
263
views
0
answers
Filter reversed rows in a dataframe (pandas)
python pandas filtering written 10 months ago by Darill • 20
0
votes
1
answer
479
views
1
answer
Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 10 months ago by angelaparody • 30 • updated 10 months ago by JC ♦ 7.6k
1
vote
0
answers
328
views
0
answers
What stage of pre-processing in EBI data?
preprocessing raw data filtering written 11 months ago by CAnna • 10
2
votes
0
answers
781
views
0
answers
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcf-tools filtering variants written 12 months ago by fwuffy • 50
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