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Filtering in DNA methylation
dna methylation preprocessing filtering written 4 days ago by noorpratap.singh • 10 • updated 1 day ago by Kevin Blighe • 1.1k
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118
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How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignment?
freebayes snp filtering written 1 day ago by Lina F • 100
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5 follow
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Selecting genes that best separate between two groups
ttest feature selection limma filtering rna-seq written 3 days ago by lirongrossmann • 10 • updated 3 days ago by Kevin Blighe • 1.1k
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6 follow
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 4 weeks ago by Anand Rao • 90
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Forum: User Friendly VCF Filtering Tools
variant calling vcf forum filtering written 15 months ago by andrew.j.skelton73 • 3.7k • updated 6 weeks ago by steven.n.hart • 20
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Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 16 months ago by chen • 970
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318
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Cannot remove subjects from Plink files
gwas plink filtering written 5 months ago by Sheila • 170
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1
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289
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Downsample BAM file
bam downsample filtering written 5 months ago by F.R. • 30 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
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352
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filtering structural variants from normal-tumor pairs (whole-genome sequencing)
sv delly manta lumpy filtering written 6 months ago by Bogdan • 260 • updated 6 months ago by d-cameron • 850
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Workflow for removing batch effect between different studies: meta-analysis
batch meta-analysis filtering microarray written 6 months ago by ali.hassan.nehme • 0
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What Are The Next Steps For Processing Indels From Gatk
indel gatk depth-of-coverage filtering written 4.4 years ago by bari1 • 40 • updated 7 months ago by Biostar ♦♦ 20
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340
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How to confirm forward and reverse primer matches the beggining of each read and keep only reads with fwd and rev primers ?
reads fastq primers filtering sequencing written 8 months ago by dzisis1986 • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 98k
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filtering tips for GWAS studies (admixture mapping)
vcf gwas vcftools filtering written 8 months ago by beausoleilmo • 140
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Why is it absolutely necessary to filter a VCF?
vcf bcftools samtools vcftools filtering written 8 months ago by beausoleilmo • 140 • updated 8 months ago by mforde84 • 870
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257
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Tool: wtools : An API REST for variant tools
varianttools variant filtering snp annotation written 8 months ago by sacha • 800
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1
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SVM based Filtering For NGS data
svm next-gen variant filtering written 8 months ago by manojkumarbioinfo • 20 • updated 8 months ago by Vivek • 1.9k
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 13 months ago by mmagoo6 • 40 • updated 9 months ago by Tao • 120
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Normalizing with RMA and filtering with mas5calls (affymetrix arrays)
rma mas5calls normalizing filtering job written 10 months ago by aguasalina • 0 • updated 10 months ago by poisonAlien • 2.4k
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Thresholds to filter out variants from vcf file
vcf filtering thresholds written 10 months ago by abedkurdi10 • 20 • updated 10 months ago by Ron • 600
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Metagenomic Iontorrent reads: filtering and denoising
reads denoise metagenome filtering written 11 months ago by fhsantanna • 340 • updated 11 months ago by sacha • 800
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Minor Allele Frequency in PLINK
array maf quality control plink filtering written 11 months ago by F.R. • 30
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Filter VCF on Number of genotyped individuals
vcf snp filtering transcriptome written 13 months ago by mek362 • 10 • updated 13 months ago by Brice Sarver • 2.3k
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Understanding implications of DP4/Strand Bias in Bacterial VCF files
vcf snp dp4 strand bias filtering written 13 months ago by f2369583 • 10 • updated 13 months ago by Biostar ♦♦ 20
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filtering pindel results
indel calling rearrangement filtering pindel written 14 months ago by Tootiki • 0
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Qual score in VCF file
vcf qual filtering written 15 months ago by swatipuraanik • 20 • updated 15 months ago by Ram ♦ 12k
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390
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Filter transcript above background noise
background noise filtering written 16 months ago by anm17 • 20
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618
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samtools reheader different lenght: truncated file
reheader samtools angsd filtering written 17 months ago by lucenaperezmaria • 0
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367
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pre-processing ,discretization and filtering microarray dataset
pre processing discretization microarray filtering written 17 months ago by asiyeulas_196505 • 0
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Paired-End Sam Flag Mismatch During Filtering
next-gen samtools sam filtering written 4.7 years ago by Andreas • 2.3k • updated 17 months ago by andrewmaltezthomas • 0
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Searching for multiple protein sequences in subset of DNA
alignment protein filtering dna written 17 months ago by tretyacv • 30
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