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2
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101
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0
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How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 7 weeks ago by nanoide • 40 • updated 4 days ago by Biostar ♦♦ 20
2
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0
answers
161
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0
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How to get Positive Control gut or Vaginal microbiome dataset
positive control decontamination filtering written 10 weeks ago by eli_bayat • 20 • updated 8 days ago by Biostar ♦♦ 20
2
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1
answer
84
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1
answer
How to create a bed file from a fasta containing all regions with clusters of >= 50 Ns and flanking 1kb regions
genome bed filtering fasta written 13 days ago by Rubal • 310 • updated 12 days ago by ATpoint ♦ 31k
0
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0
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94
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0
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ADMIXTURE optimal k depends on filters?
snp admixture plink filtering cross-validation written 7 weeks ago by RvV • 0
1
vote
0
answers
81
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0
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Application of empty blast result
blast filtering empty written 7 weeks ago by marongiu.luigi • 490
0
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1
answer
120
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1
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Understanding variants that PASS filter but are also flagged?
filtering written 9 weeks ago by rthomas • 0
0
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0
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94
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0
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Eliminating panel mutations based on coverage of PoN
gatk filtering written 10 weeks ago by vctrm67 • 10
0
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0
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376
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0
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 8 months ago by Mari • 0 • updated 3 months ago by Biostar ♦♦ 20
0
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1
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549
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1
answer
gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 11 months ago by jon.klonowski • 70 • updated 4 months ago by cricgpu • 0
0
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1
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158
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1
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Low mean of read depth - filtering SNP in VCF file
vcf snp filtering written 4 months ago by Trevorsky • 0 • updated 4 months ago by joneill4x • 70
0
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1
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260
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1
answer
Filtering for individual allelic balance in multisample vcf using GATK4
vcf gatk gatk4 filtering written 5 months ago by mernster • 0 • updated 5 months ago by chrchang523 ♦ 6.6k
2
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1
answer
174
views
1
answer
Not enough SNPs after filtering an imputed dataset
snp impute filtering qctool variants written 5 months ago by Max • 20
3
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0
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296
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0
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Error: Bad BCF record - shared section malformed or too short after vcftools filtering
vcf bcf filtering snp written 5 months ago by yvanpapa • 0
2
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1
answer
947
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1
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Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 23 months ago by angelaparody • 50 • updated 6 months ago by Biostar ♦♦ 20
2
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0
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286
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0
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Samtools fastq returns less unmapped than flagstat
ngs alignment samtools filtering written 7 months ago by ciemanek • 130 • updated 6 months ago by Biostar ♦♦ 20
0
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0
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239
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0
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Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2 rna-seq filtering written 7 months ago by Mozart • 140
2
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1
answer
407
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1
answer
How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 8 months ago by Jurat Shahidin • 80
7
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1
answer
401
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1
answer
what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 9 months ago by Jurat Shahidin • 80
0
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0
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290
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0
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Filtering for Percentage of identity (sequence identity: pident, %) from tblastn results
sequence pident blast filtering tblastn written 9 months ago by endretoth • 20
0
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1
answer
241
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1
answer
How to interpret results from GATK ApplyVQSR
variant calling gatk applyvqsr filtering written 9 months ago by kittys • 0 • updated 9 months ago by Nicolas Rosewick ♦ 8.7k
1
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0
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353
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0
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Filtering VCF file
vcf snp filtering written 11 months ago by Prakki Rama • 2.4k • updated 10 months ago by Biostar ♦♦ 20
6
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1
answer
302
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1
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Bbduk filters away good reads
preprocessing next-gen quality control filtering written 10 months ago by dt • 30
5
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1
answer
970
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1
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 11 months ago by newbie • 70 • updated 11 months ago by Prakash • 1.8k
0
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0
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622
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0
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Calculate individual missingness in vcf NOT using VCFtools
rad-seq snp filtering polyploid written 11 months ago by evan.hersh • 0
7
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2
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2.7k
views
6 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 20 months ago by hewaholax • 0 • updated 11 months ago by Biostar ♦♦ 20
9
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3
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3.6k
views
8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 2.2 years ago by fhsantanna • 470 • updated 12 months ago by bhclement • 0
0
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1
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1.4k
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1
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 12 months ago by ignazio.fontana • 0
1
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1
answer
588
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1
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Are the somatic mutations in TCGA filtered for germline mutations?
tcga mutations filtering written 13 months ago by rafi.zon • 10 • updated 13 months ago by markus.riester • 490
19
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1
answer
1.1k
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5 follow
1
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Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the state of the art)
blacklist chip-seq filtering written 14 months ago by msimmer92 • 250 • updated 14 months ago by Devon Ryan ♦ 94k
0
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1
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538
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1
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Filtering SCRNAseq dataset
rna-seq filtering written 14 months ago by kanwarjag • 1.0k • updated 14 months ago by geek_y ♦ 10k
<prev • 139 results • page 1 of 5 • next >
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