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<prev • 112 results • page 1 of 4 • next >
7
votes
1
answer
208
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1
answer
Is there a way to do read filtering (MAPQ> certain value) on a BAM instead of SAM file?
quality bam sam filtering mapq written 8 weeks ago by msimmer92 • 50
0
votes
0
answers
108
views
0
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Bcftools homozygous calls have less read counts than heterozygotes
vcf population genomics bcftools filtering bwa written 19 days ago by oselm • 30
3
votes
1
answer
149
views
1
answer
Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 23 days ago by miles.thorburn • 30
0
votes
0
answers
99
views
0
answers
How to filter out mouse cells to from a mixture library (mouse and human cells) by cellranger?
mix library scrna filtering written 28 days ago by mzhoufulai • 0
3
votes
1
answer
216
views
1
answer
Filter a large fasta or fastq by a query sequence, with parameterized fuzzy matching
fasta fastq filtering written 11 weeks ago by ovon • 20 • updated 11 weeks ago by finswimmer ♦ 9.0k
0
votes
0
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158
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0
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cd-hit-est total seq value doesn't match number of sequences being compared?
cd-hit-est metagenomics binning filtering cd-hit written 12 weeks ago by c.e.chong • 10
0
votes
1
answer
1.4k
views
1
answer
Anyone Has Used Snp & Variation Suite Of Golden Helix?
snp filtering written 5.2 years ago by Tonyzeng • 300 • updated 3 months ago by Shicheng Guo • 7.3k
1
vote
0
answers
186
views
0
answers
How to filter VCF with HRun > 8 and AB > 0.2 and AB < 0.2
vcf filtering written 3 months ago by pegeot.henri • 0
0
votes
0
answers
234
views
0
answers
Filtering results difference amongst VCF files
gatk snp filtering variants written 3 months ago by prasundutta87 • 300
0
votes
0
answers
180
views
0
answers
scRNA-seq, filter low expressed genes based on RPKM value
scrna-seq rpkm expression filtering written 3 months ago by g.e.novakovsky • 20
4
votes
1
answer
145
views
1
answer
absence of gene symbol when selecting "most severe consequence" in VEP
variant effect predictor filtering written 3 months ago by nazaninhoseinkhan • 360 • updated 3 months ago by Emily_Ensembl ♦ 17k
0
votes
0
answers
281
views
0
answers
Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 6 months ago by stefanos.bamopoulos • 30 • updated 4 months ago by Biostar ♦♦ 20
6
votes
5
answers
4.9k
views
5
answers
Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 2.5 years ago by mmagoo6 • 50 • updated 5 months ago by natalia.han • 0
0
votes
1
answer
407
views
1
answer
How to get GQX annotation in vcf file
snp filtering written 12 months ago by Clare • 120 • updated 5 months ago by Kevin Blighe ♦ 35k
5
votes
1
answer
355
views
1
answer
how to extract unique variants from GVCF
gatk variant-calling filtering gvcf written 5 months ago by harold.smith.tarheel • 4.2k • updated 5 months ago by Pierre Lindenbaum ♦ 116k
7
votes
2
answers
567
views
6 follow
2
answers
Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 6 months ago by hewaholax • 0 • updated 6 months ago by a.zielezinski ♦ 8.5k
1
vote
1
answer
192
views
1
answer
high frequency SNPs (and other variations) after subtracting blood variants from tumor ones
exome snp filtering frequencies written 6 months ago by gab • 20 • updated 6 months ago by Chris Miller ♦ 20k
6
votes
0
answers
596
views
0
answers
Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
qc fastp filtering tool written 6 months ago by chen • 1.7k • updated 6 months ago by lena1graham • 0
0
votes
1
answer
178
views
1
answer
State of processing in ENA, metaHIT samples
metahit filtering ena written 7 months ago by CAnna • 10
8
votes
1
answer
1.0k
views
1
answer
Allele Depth (AD) / Allele Balance (AB) Filtering in GATK 4
gatk allele depth filtering sequencing written 7 months ago by maegsul • 110 • updated 7 months ago by Pierre Lindenbaum ♦ 116k
0
votes
0
answers
235
views
0
answers
No QD scores on 10% of observations in VCF?
vcf gatk qd filtering written 8 months ago by miles.thorburn • 30
0
votes
0
answers
214
views
0
answers
Filter reversed rows in a dataframe (pandas)
python pandas filtering written 8 months ago by Darill • 20
0
votes
1
answer
394
views
1
answer
Code to select randomly 1 SNP per scaffold
vcf snp filtering random selection written 8 months ago by angelaparody • 20 • updated 8 months ago by JC ♦ 7.2k
1
vote
0
answers
295
views
0
answers
What stage of pre-processing in EBI data?
preprocessing raw data filtering written 9 months ago by CAnna • 10
2
votes
0
answers
632
views
0
answers
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcf-tools filtering variants written 10 months ago by fwuffy • 50
4
votes
1
answer
608
views
1
answer
How to do SNP selection in large VCF/BCF/GenotypeTables in R like you can using BCFTools,CYVCF2 or Excel
vcf R snp filtering written 10 months ago by William • 4.4k • updated 10 months ago by Sean Davis ♦ 25k
1
vote
1
answer
255
views
1
answer
GO annotation filtering for BP
go filtering functional annotation written 11 months ago by lessismore • 560 • updated 11 months ago by lieven.sterck ♦ 3.5k
9
votes
3
answers
1.6k
views
7 follow
3
answers
Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 12 months ago by fhsantanna • 430
1
vote
1
answer
645
views
1
answer
Filtering lowly expressed genes - edgeR
R filtering rna-seq edger written 12 months ago by noeD • 70 • updated 12 months ago by Santosh Anand ♦ 4.4k
19
votes
4
answers
3.8k
views
4
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Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
fastq tool afterqc polyg filtering quality control written 2.7 years ago by chen • 1.7k • updated 12 months ago by zhimenggan • 0
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