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Can I use FLEXBAR to detect and remove barcodes out of my short reads without demultiplexing ?

illumina short reads barcodes removal flexbar written 12 days ago by giulia.trauzzi • 0

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354

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flexbar 3.50 installation error

flexbar3.50 flexbar written 7 months ago by Shashi Kanth • 10 • updated 7 months ago by h.mon ♦ 32k

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656

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flexbar for many files

adapter flexbar rna-seq trim written 16 months ago by charadriussp • 0

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539

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Allow mismatches but not gaps in barcode dectection using flexbar

gap barcode error rate flexbar mismatch written 2.3 years ago by adam.carol • 10

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Recent Replies

A: Facing issue while installing Bio::SeqIO module by madhujamano • 0
Yes Got it. Thank you.
C: Want to reverse the fasta sequence by GenoMax ♦ 96k
https://www.biostars.org/u/56270/ : Don't forget to follow up on your past threads. If an answe...
C: Want to reverse the fasta sequence by cpad0112 ♦ 15k
use `faRc` from kent utils
C: Want to reverse the fasta sequence by cpad0112 ♦ 15k
Better to use ` seqtk seq -r file.fa` for revcomp.
C: STAR alignment loop segmentation fualt (core dumped) by curious • 500
you could try requesting more memory than you would get by default w/ 19 cores though
C: Data access through python by desouzareis.r • 30
You could download the data via the ftp page https://hgdownload.cse.ucsc.edu/goldenpath/hg38/dat...
A: Data access through python by GenoMax ♦ 96k
BioEntrez package in biopython : https://biopython.org/docs/1.75/api/Bio.Entrez.html Examples of ...
A: nextflow set tuple issue by Barry Digby • 650
Hi joe, When you ask MarkDuplicates to `.collect()` the inputs you lose the inherent structure ...
A: Why I can't download gtf files from GenCode by GenoMax ♦ 96k
Are you using chrome browser? If so try a different browser. Chrome has disabled plain FTP by def...
A: FASTQ,BAM and VCF file size for 300X WES samples by GenoMax ♦ 96k
I don't know if the exome's in [**Genome-In-A-Bottle**][1] project are 300x but there is all kind...
C: Want to reverse the fasta sequence by GenoMax ♦ 96k
If you only want to reverse then change @Pierre's solution to: cat input.fa | while read L; ...
C: Want to reverse the fasta sequence by ATpoint ♦ 46k
Correct! Edited it.

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