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Best way to address different batches of RNA-seq
rpkm sequence batch effect rna-seq fold change written 2.3 years ago by tud55122 • 20 • updated 14 days ago by Biostar ♦♦ 20
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Calculating Fold Change from regularized log2- transformed count data, generated by DESeq2 function rlog
gene deseq2 function rlog rna-seq fold change written 7 weeks ago by tommaso.gastaldi • 0 • updated 7 weeks ago by swbarnes2 ♦ 6.2k
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Fold change cut off enrichment analysis
enrichment cutoff ontology rna-seq fold change written 4 months ago by Pietro • 90 • updated 4 months ago by shawn.w.foley • 840
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Microarray RMA_log2Signal fold change calculation
rma_log2signal microarray fold change written 5 months ago by Jaccy • 0
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2
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Tools for qRT-PCR data analysis
tools expression qrt-pcr fold change written 5 months ago by mohammedtoufiq91 • 50 • updated 5 months ago by l.souza • 70
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How to include genes having negative fold change in the log2 FC plot?
ngs log2 ase rna-seq fold change written 6 months ago by Susmita Mandal • 50 • updated 6 months ago by swbarnes2 ♦ 6.2k
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What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 10 months ago by aishu.jp • 10
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How to report and plot qPCR data
qpcr fold change written 3.1 years ago by sabela • 0 • updated 12 months ago by Kevin Blighe ♦ 47k
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Assigning Fold Change for Polyester
rna-seq differential expression fold change written 13 months ago by priyankamaripuri • 40 • updated 13 months ago by h.mon ♦ 27k
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Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
beta value sleuth edger rna-seq fold change written 17 months ago by cristina.osuna.cruz • 0
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DESEQ analysis and result
sequencing deseq2 rna-seq fold change written 18 months ago by soojinima • 10
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how to combain microarray sets from the same platform but raw data were normalized by different methods?
fold change written 19 months ago by lur_murad • 0 • updated 19 months ago by pfs • 270
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calculate fold change
calculate rna fold change written 22 months ago by tjacob.gene • 0
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Is the heatmap matruix from vst expressed in fold change?
heatmap pheatmap vsd rna-seq fold change written 2.1 years ago by Lila M • 790 • updated 2.1 years ago by Devon Ryan ♦ 91k
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Test fold change significany using duplicate reference transcriptome (RNA-Seq)
transcriptome rna-seq fold change written 2.8 years ago by songzewei • 10 • updated 2.8 years ago by Tonor • 420
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limma fold change problem
R limma fold change written 2.9 years ago by Learner • 160 • updated 2.9 years ago by russhh • 4.6k
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How to determine Up and Down regulated genes from log2(fold change)of the Cuffdiff output?
R next-gen cuffdiff rna-seq fold change written 3.1 years ago by jiffyjohn23 • 0 • updated 3.1 years ago by Satyajeet Khare • 1.4k
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Fold change calculation
fold change written 3.3 years ago by anm17 • 20 • updated 3.3 years ago by Shyam • 130
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How to compare logratiofc to control group
logratio compare to control fold change written 3.3 years ago by anm17 • 20 • updated 3.3 years ago by WouterDeCoster ♦ 40k
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Calculating fold change at enhancers and promoters
rna-seq fold change written 3.3 years ago by Sinji • 2.8k • updated 3.3 years ago by Bogdan • 850
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Fold change > 2 and P-value<0.05 in micro-array differential analysis
pvalue microarray fold change written 4.0 years ago by Shicheng Guo • 7.7k • updated 4.0 years ago by seidel ♦ 6.8k
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Differential expression with CQN normalized RNA-seq data
differential expression rna-seq cqn fold change written 5.3 years ago by swkim • 20 • updated 5.3 years ago by Devon Ryan ♦ 91k
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