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Recent Replies
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C: How do I remove unwanted line from GFF3 file? by
lieven.sterck ♦ 6.7k
it's not referring to nucleotides but to gene/transcript names (eg the second one is _B-T) which ...
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That's what I think too, but I was trying to look into the [bcftools manual][1] and it still refe...
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C: How do I remove unwanted line from GFF3 file? by
lieven.sterck ♦ 6.7k
I'm not sure that's valid according to the GFF3 specs? (ID should be unique ?)
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A: How do I remove unwanted line from GFF3 file? by
mito • 0
sed 's:\([ACGT]\)-[ACGT]:\1:g' my_file.gff3 This searches for all occurances of `nucleotide1...
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C: What is the difference between mpileup samtools and bcftools? by
lieven.sterck ♦ 6.7k
as far as I understood the `bcftools mpileup` is the more recent replacement for `samtools mpileu...
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C: How do I remove unwanted line from GFF3 file? by
genomax ♦ 77k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
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Did you manage to merge the two networks? Do you have given the nodes attributes that indicate wh...
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Because we are using `elink` that loses the original search term being used. One work around coul...
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agata • 0
That's a really great idea! But it's not printed in both output files, even when I'm adding *Asse...
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Use the accession number as the key.
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manaswwm • 40
Try this package in python - https://pythonhosted.org/gffutils/ This package creates a "local" d...
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If this is paired end data then you need to `cat` the files in exactly the same order for both R1...
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