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1,000 results • Page 1 of 20
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4
votes
2
replies
234
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 3 days ago by 43k • written 3 days ago by ▴ 10
7
votes
7
replies
842
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 4 days ago by ★ 2.5k • written 4 days ago by • 0
1
vote
2
replies
322
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
2 days ago by Javier • 0
16
votes
10
replies
1.0k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 21 days ago by 5.3k • written 22 days ago by ★ 2.4k
1
vote
1
reply
207
views
Forum: Can I use this community for software development?
software-development
updated 25 days ago by 43k • written 25 days ago by • 0
5
votes
2
replies
369
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 25 days ago by 54k • written 25 days ago by • 0
0
votes
0
replies
166
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 4 weeks ago by 43k • written 4 weeks ago by • 0
1
vote
3
replies
464
views
Forum: Development plan for a bioinformatics database developer/coder
developer
5 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
638
views
Forum: Bioinformatics career transition
career forum
updated 5 weeks ago by ★ 16k • written 5 weeks ago by ▴ 20
4
votes
2
replies
466
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
5 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
749
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
6 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
156
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 1.2k
0
votes
2
replies
349
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
6 weeks ago by Dave Carlson ★ 1.7k
31
votes
12
replies
915
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
7 weeks ago by karlaarz ▴ 90
5
votes
4
replies
525
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 8 weeks ago by 141k • written 8 weeks ago by ▴ 10
1
vote
2
replies
354
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 8 weeks ago by 81k • written 8 weeks ago by ▴ 20
8
votes
7
replies
765
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 8 weeks ago by ▴ 120 • written 11 weeks ago by • 0
1
vote
0
replies
265
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 8 weeks ago by 161k • written 8 weeks ago by ★ 1.4k
4
votes
2
replies
359
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 10 weeks ago by ★ 5.8k • written 10 weeks ago by ▴ 10
8
votes
6
replies
2.8k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
191
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 20
2
votes
3
replies
420
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
11 weeks ago by Ajay A Shettigar • 0
17
votes
11
replies
970
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
12 weeks ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.2k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 23 months ago by ▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 5.8k • written 3 months ago by ▴ 40
7
votes
6
replies
719
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 3 months ago by ▴ 20
21
votes
12
replies
3.5k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
405
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
3 months ago by LauferVA 4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 3 months ago by ★ 2.6k • written 3 months ago by ★ 27k
4
votes
3
replies
740
views
Forum: How to get started in bioinformatics
students
updated 3 months ago by 43k • written 3 months ago by ▴ 10
2
votes
2
replies
570
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 3 months ago by 43k • written 3 months ago by ▴ 40
0
votes
2
replies
3.2k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by 141k • written 3 months ago by ▴ 10
5
votes
3
replies
586
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
643
views
Forum: how to start Bioinformatics?
basics
updated 4 months ago by ★ 27k • written 4 months ago by • 0
19
votes
5
replies
1.1k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
911
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by 43k • written 4 months ago by • 0
1
vote
1
reply
479
views
Forum: want to work in open source project/project in bioinformatics
project
updated 4 months ago by 43k • written 4 months ago by • 0
3
votes
5
replies
1000
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by 43k • written 5 months ago by • 0
21
votes
11
replies
2.5k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 13 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
614
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 40
0
votes
0
replies
363
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 months ago by 43k • written 5 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 months ago by tshtatland ▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 months ago by UT_FAN ▴ 40
0
votes
0
replies
437
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
6 months ago by ishwarvh • 0
0
votes
0
replies
345
views
Forum: Automated Checks And QA
retrospective
6 months ago by Sasha ▴ 830
7
votes
13
replies
1.3k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 6 months ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 6 months ago by ▴ 100 • written 8.0 years ago by 11k
3
votes
3
replies
890
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by 43k • written 7 months ago by • 0
19
votes
14
replies
2.1k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 7 months ago by 22k • written 7 months ago by ▴ 70
1,000 results • Page 1 of 20
Recent Votes
Answer: Duplicate marking, read names, and the SRA
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Answer: Cellranger count error: Input FASTQ file ended prematurely
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
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Recent Awards • All
Scholar to Ann ★ 2.4k
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Recent Replies
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
> fastq-dump is deprecated Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required) The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA by GenoMax 141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by GenoMax 141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by BioinfGuru ★ 1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO by GenoMax 141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely by GenoMax 141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely by bp22 ▴ 70
Dear all, The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by Ram 43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately? by Ram 43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues by _quantum_girl_ ▴ 10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis by BioinfGuru ★ 1.7k
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