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1,338 results • Page 1 of 27
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7
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7
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368
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6 follow
Forum: R - A bioinformatic analysis programming language for NGS
bioinformatics R BI NGS
9 hours ago by guoxuantong ▴ 120
12
votes
13
replies
378
views
Forum: Bioinformatics startup market analysis
startup
1 day ago by gtechbio ▴ 30
1
vote
1
reply
81
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 3 days ago by 12k • written 3 days ago by ▴ 20
2
votes
1
reply
4.4k
views
Forum: Biostar Forum Posting Guidelines
Forum
written 9.0 years ago by 87k
14
votes
7
replies
248
views
6 follow
Forum: What to put in my Github
Github
updated 2 days ago by ★ 2.4k • written 3 days ago by ▴ 20
281
votes
54
replies
10k
views
39 follow
Forum: What Do You Waste Your Time On
bioinformatics scripting Forum
updated 5 days ago by ▴ 170 • written 7.9 years ago by 8.6k
11
votes
5
replies
290
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
7 days ago by tiagobellintani ▴ 20
17
votes
20
replies
716
views
6 follow
Forum: bioinformatics thesis
thesis
updated 5 days ago by 32k • written 7 days ago by ▴ 30
2
votes
11
replies
474
views
7 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
7 days ago by hafiz.talhamalik ▴ 300
44
votes
23
replies
4.4k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 11 days ago by 32k • written 3.1 years ago by 98k
18
votes
8
replies
511
views
8 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 11 days ago by 12k • written 18 days ago by 20k
4
votes
2
replies
244
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 15 days ago by 99k • written 16 days ago by ▴ 570
1
vote
1
reply
123
views
Forum: Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 17 days ago by 87k • written 17 days ago by ▴ 120
53
votes
11
replies
2.3k
views
13 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
bioinformatics Forum library
written 6 months ago by 5.8k
1
vote
0
replies
105
views
Forum: Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
1 day ago by guoxuantong ▴ 120
0
votes
1
reply
130
views
Forum: Apache Spark on AWS
apachespark
updated 24 days ago by 20k • written 24 days ago by ★ 1.1k
9
votes
5
replies
450
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome Forum
25 days ago by nickroseae ▴ 10
50
votes
20
replies
3.4k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics Forum
updated 26 days ago by 48k • written 5.1 years ago by ★ 1.0k
3
votes
2
replies
293
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
machine learning computer scientist Forum
updated 26 days ago by 98k • written 26 days ago by • 0
3
votes
5
replies
411
views
Forum: Hide Emails from Guests
biostars Forum
written 4 months ago by ▴ 570
23
votes
9
replies
2.8k
views
8 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
28 days ago by Joe 19k
170
votes
88
replies
12k
views
23 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
written 13 months ago by 87k
0
votes
0
replies
103
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq R sequencing Forum
updated 5 weeks ago by 10k • written 5 weeks ago by ▴ 40
28
votes
7
replies
705
views
Forum: Do you have favorite icons for bioinformatics?
software error Forum
updated 5 weeks ago by 11k • written 5 weeks ago by ▴ 140
0
votes
0
replies
109
views
Forum: Determining Heteroplasmy per sample
Heteroplasmy per sample in VCF file bcftools Forum
5 weeks ago by katendejohnspeke • 0
4
votes
4
replies
188
views
Forum: Looking for a CS PhD Program + tips
PhD Forum
5 weeks ago by lodicakes • 0
16
votes
4
replies
688
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
bioconda conda bowtie2 tbb software error Forum
updated 5 weeks ago by 98k • written 5 weeks ago by ▴ 110
6
votes
4
replies
3.9k
views
Forum: Chip-Seq Data Analysis
chip-seq Forum
updated 5 weeks ago by • 0 • written 8.9 years ago by ★ 1.1k
1
vote
2
replies
569
views
Forum: Discussion on effects of Gain-of-Function mutations
protein missense variants Forum
updated 6 weeks ago by 48k • written 6 weeks ago by ★ 2.0k
121
votes
44
replies
21k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 4.6 years ago by ▴ 780
2
votes
0
replies
225
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
bioinformatics courses Forum
updated 6 weeks ago by 32k • written 6 weeks ago by ▴ 20
19
votes
4
replies
367
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
SNP forum survey papers bioinformatics Forum
updated 6 weeks ago by ★ 10k • written 6 weeks ago by ★ 1.1k
1
vote
0
replies
149
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open data Forum
6 weeks ago by Emily_Ensembl 22k
0
votes
1
reply
142
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
job Forum
updated 6 weeks ago by 99k • written 6 weeks ago by ★ 1.0k
13
votes
3
replies
5.6k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd Forum
updated 7 weeks ago by 9.7k • written 8.9 years ago by 48k
15
votes
9
replies
349
views
7 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education Forum
written 8 weeks ago by ▴ 40
1
vote
4
replies
155
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP Forum
7 weeks ago by mfshiller ▴ 10
1
vote
4
replies
344
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis Forum
7 weeks ago by cyntsc10 • 0
4
votes
6
replies
274
views
Forum: What are some areas of bioinformatics that are overdone?
meta Forum
updated 7 weeks ago by 87k • written 7 weeks ago by 20k
3
votes
3
replies
174
views
Forum: How to change my email address
email address change account management Forum
7 weeks ago by Bosberg ▴ 30
12
votes
1
reply
458
views
Forum: Best programming language for bioinformatics - R Language
programming R Forum
7 hours ago by guoxuantong ▴ 120
2
votes
5
replies
144
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R Forum
8 weeks ago by steve ★ 2.9k
6
votes
5
replies
250
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment Forum
updated 8 weeks ago by 32k • written 8 weeks ago by ▴ 20
40
votes
24
replies
807
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
R Python Programming Scripting Forum
updated 9 weeks ago by 9.7k • written 9 weeks ago by ▴ 30
0
votes
3
replies
463
views
Forum: MOOC for AI and Machine learning for Bioinformatics
AI/ML Forum
updated 9 weeks ago by ▴ 240 • written 7 months ago by ★ 1.4k
0
votes
0
replies
127
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq Forum
9 weeks ago by Seaweed • 0
56
votes
43
replies
8.7k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
RNA-Seq NGS alignment genome sequence Forum
updated 9 weeks ago by ▴ 20 • written 2.2 years ago by 9.6k
22
votes
7
replies
574
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
RNA-Seq R cytoscape Forum
written 12 weeks ago by ▴ 50
7
votes
4
replies
252
views
Forum: Employer Insights for Bioinformatics Job Seekers
career job advice Forum
updated 11 weeks ago by ▴ 10 • written 11 weeks ago by ▴ 120
7
votes
19
replies
407
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
RNA-Seq Tool Forum
written 3 months ago by ▴ 10
1,338 results • Page 1 of 27
Recent Votes
Answer: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or
Comment: How can I Extract Transposable element from a new genome assembly?
Answer: How to combine 2 incomplete GTF
Answer: How to combine 2 incomplete GTF
A: Correct Way To Parse A Fasta File In Python
How to combine 2 incomplete GTF
How to combine 2 incomplete GTF
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Recent Awards • All
Voter to cmo ▴ 70
Scholar to Nicolas Rosewick 9.3k
Scholar to Juke34 ★ 5.3k
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Recent Replies
Comment: How to combine 2 incomplete GTF by rafaelsolersanblas ▴ 70
Hi Juke, I am trying to install it and I can't. ![enter image description here][1] [1]: /media/images/bc08978b-10f7-4666-b385-57807b…
Comment: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or by cmo ▴ 70
I agree with you, Mensur, that the GTDB is arguably more reliable and comprehensive than NCBI. However, due to the relative greater longevi…
Comment: how to select peaks at not transcribed genes by Lila M ▴ 910
rigth, it is a ChIP seq analysis
Comment: how to select peaks at not transcribed genes by ATpoint 48k
Which type data are we talking about? What was the experiment? There are literally no details in this question right now. It the assay meas…
Comment: How to combine 2 incomplete GTF by rafaelsolersanblas ▴ 70
Thank yo so much Juke!
Comment: MASURCA output by kilcdincer ▴ 10
Thank you. I understood ploidy part. My genome is supposed to belong to diploid Candida albicans. And genome size of diploid Candida alb…
Answer: How to combine 2 incomplete GTF by Juke34 ★ 5.3k
To give more precision to the @genomax comment: `agat_sp_compare_annotations.pl` will tell you the differences. Then you can choose to …
Comment: GSEA for RNA_seq dataset by ATpoint 48k
No problem. I am not really familiar with what the GSEA implementation from the Broad institute does. I personally use fgsea from Bioconduc…
Comment: How to combine 2 incomplete GTF by rafaelsolersanblas ▴ 70
Thank you!! I will try it :)
Comment: how to select peaks at not transcribed genes by Lila M ▴ 910
you mean in the call peaks? And what are those 232 not annotated peaks?aren't they tss associated to not transcribed genes?
Comment: How to combine 2 incomplete GTF by GenoMax 99k
Compare annotation tool `agat_sp_compare_annotations.pl` from [AGAT toolkit][1]. Install [**AGAT**][2] using `conda`. [1]: https://gith…
Comment: GSEA for RNA_seq dataset by 1961012 • 0
I am really sorry for asking for clarification because I am a beginner. I already used all genes (normalized and filtered) for GSEA using …
Comment: Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work by aka • 0
I work in a research laboratory that has specific demands that make the general pipeline not fit, I have to create it from scratch, but tha…
Comment: Extract chromosome 1 - 22 fasta file by shubhamkumbhar420 • 0
Thank you for your response! It worked !!!
Answer: How to combine 2 incomplete GTF by Michael Dondrup 48k
I made this perl script to compare two GFF files. It might be useful after some modifications (changing GFF version to 2?). Needs BioPerl i…
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