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4
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494
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Forum: Cloud Computing Services available?
resources Services Computing Cloud Bioinformatics
updated 2 days ago by ★ 1.2k • written 5 weeks ago by ★ 2.1k
2
votes
7
replies
368
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 11 days ago by 36k • written 11 days ago by ▴ 20
6
votes
3
replies
285
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 12 days ago by ★ 1.4k • written 13 days ago by 15k
0
votes
1
reply
127
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 17 days ago by 64k • written 17 days ago by • 0
4
votes
2
replies
330
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
teaching biology bioinformatics
21 days ago by Vincent Laufer ★ 2.2k
0
votes
0
replies
123
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
23 days ago by goddy93 • 0
3
votes
1
reply
175
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 23 days ago by 36k • written 26 days ago by • 0
5
votes
2
replies
232
views
Forum: Skills for industry career in bioinformatics
industry
updated 27 days ago by 9.3k • written 27 days ago by ▴ 10
9
votes
6
replies
442
views
Forum: Programming languages in industry
programming language
updated 4 weeks ago by 9.4k • written 4 weeks ago by ▴ 20
2
votes
6
replies
415
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
5 weeks ago by Antonio R. Franco ★ 4.9k
1
vote
0
replies
135
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
6 weeks ago by Francesco ▴ 20
3
votes
2
replies
311
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
7 weeks ago by BioInfoBeginner ▴ 40
0
votes
0
replies
180
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf genotypes bcftools bioinformatics
7 weeks ago by pabe ▴ 10
1.1k
votes
181
replies
44k
views
106 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 7 weeks ago by ★ 2.2k • written 11.3 years ago by 20k
24
votes
6
replies
3.6k
views
6 follow
Forum: Awk in Bioinformatics
awk Forum shell perl
written 4.0 years ago by ★ 9.1k
7
votes
8
replies
706
views
Forum: Can we lock posts related to merging vcf files?
forum
updated 9 weeks ago by 94k • written 9 weeks ago by ★ 2.2k
3
votes
3
replies
363
views
Forum: Microbiologist as a career
discussion question
updated 9 weeks ago by ★ 4.5k • written 9 weeks ago by 10
0
votes
0
replies
176
views
Forum: Bioinformatics for understanding cancer and other diseases
omics bioinformatics
9 weeks ago by pixie@bioinfo ★ 1.4k
1
vote
3
replies
360
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 9 weeks ago by ★ 2.9k • written 9 weeks ago by • 0
3
votes
3
replies
316
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 9 weeks ago by 26k • written 9 weeks ago by ★ 2.8k
0
votes
2
replies
327
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 10 weeks ago by 52k • written 10 weeks ago by ▴ 970
33
votes
11
replies
7.1k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
methylation computational tools Forum
updated 10 weeks ago by • 0 • written 6.8 years ago by ★ 9.1k
6
votes
8
replies
560
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
10 weeks ago by stan.aanhane ▴ 30
7
votes
6
replies
490
views
Forum: How to learn bioinformatics?
bioinformatics
10 weeks ago by sakichwan ▴ 10
2
votes
2
replies
326
views
Forum: Project ideas
project-ideas
updated 11 weeks ago by 52k • written 11 weeks ago by • 0
0
votes
0
replies
142
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
12 weeks ago by ch333 • 0
1
vote
6
replies
380
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 6 weeks ago by 36k • written 3 months ago by • 0
2
votes
2
replies
307
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
gene bioinformatics GWAS NGS discovery WGS
updated 3 months ago by 64k • written 3 months ago by • 0
5
votes
5
replies
424
views
Forum: Best book introducing R programming?
coding R
3 months ago by Scottie ▴ 10
4
votes
6
replies
403
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
3 months ago by Matthias Zepper ★ 1.4k
0
votes
0
replies
250
views
Forum: commonly-used bioinformatics pipeline
Galaxy Bioinformatics
updated 3 months ago by 14k • written 3 months ago by ▴ 120
0
votes
0
replies
167
views
Forum: Master's topic in Bioinformatics
Bio-informatique
3 months ago by Badji Oumar • 0
13
votes
15
replies
2.3k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
biostar Forum
updated 3 months ago by 118k • written 7.1 years ago by 94k
0
votes
1
reply
222
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
3 months ago by hkrtrainings408 • 0
47
votes
24
replies
3.9k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
bioinformatics msc Forum
updated 3 months ago by ▴ 50 • written 4.8 years ago by 52k
5
votes
8
replies
622
views
Forum: SQL-why do we need it in Bioinformatics ?
Programming Bioinformatics
4 months ago by iibrams07 ▴ 10
6
votes
7
replies
443
views
Forum: Generic avatars, not gravatars?
technical avatar
4 months ago by Michael Dondrup 52k
2
votes
0
replies
373
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
4 months ago by rohitsatyam102 ▴ 580
0
votes
0
replies
174
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
4 months ago by jeronimocid93 • 0
2
votes
2
replies
382
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 6 weeks ago by 36k • written 4 months ago by ▴ 20
12
votes
9
replies
2.5k
views
8 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
DAVID enrichment ontology gene analysis GSEA
updated 4 months ago by 94k • written 4 months ago by ★ 1.7k
0
votes
0
replies
153
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
4 months ago by akamonto • 0
2
votes
5
replies
394
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 4 months ago by 36k • written 4 months ago by ▴ 500
0
votes
0
replies
206
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 5 months ago by 64k • written 5 months ago by • 0
29
votes
10
replies
4.4k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
updated 5 months ago by ★ 2.4k • written 4.4 years ago by 20k
3
votes
6
replies
1.6k
views
Forum: A Css For Small Screen Devices?
meta Forum
written 10.3 years ago by ★ 3.6k
10
votes
6
replies
810
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 6 weeks ago by 36k • written 5 months ago by ▴ 20
0
votes
3
replies
381
views
Forum: Project Topics on bioinformatic
biology Nutrition Data Technology analysis Molecular Coding
updated 5 months ago by 21k • written 5 months ago by • 0
0
votes
4
replies
461
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 5 months ago by 118k • written 5 months ago by ▴ 10
2
votes
0
replies
239
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
5 months ago by rohitsatyam102 ▴ 580
1,000 results • Page 1 of 20
Recent Votes
Answer: convert .bed format to .txt format
Answer: convert .bed format to .txt format
Answer: Extract nucleotide sequence from a RefSeq Transcript ID
Answer: Extract nucleotide sequence from a RefSeq Transcript ID
Answer: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2
Answer: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2
find / score transcription factors based on motifs
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Recent Replies
Answer: Stringtie skips some reference genes by Antonio R. Franco ★ 4.9k
If using RNA, I would expect not having the complete set of genes being expressed
Comment: convert .bed format to .txt format by rheab1230 ▴ 60
Yes, I was able to view it. Thank you.
Comment: Extract nucleotide sequence from a RefSeq Transcript ID by Vincent Laufer ★ 2.2k
thank you!!!!!!!!!!! this was so helpful. makes me think we convenient browser based tools etc. i really appreciate you.
Answer: Extract nucleotide sequence from a RefSeq Transcript ID by GenoMax 118k
Using [**Entrezdirect**][1]. Example for getting nucleotides 1101 to 1120. $ efetch -db nuccore -id NM_001346941.2 -seq_start 1101 -se…
Comment: Using whole exome data from different protocols by m.bamajboor • 0
I have similer question regarding the kits used for sequencing. I'm in a process of calculating the allele frequency of a group of samples,…
Comment: vcf2maf allele frequency not converting by hamrejr • 0
Thanks. I am trying to get this on the maf from the vcf. So the command I am using is: vcf2maf.pl --input-vcf .vcf --output-maf .vcf.m…
Comment: [RNAseq, featureCounts] Can paired-end data be processed as single end? by Luka • 0
The IDs were indeed a problem, the processing worked after changing them. Thanks for all the help!
Answer: vcf2maf allele frequency not converting by Pierre Lindenbaum 147k
not tested but that could be: paste <(bcftools view in.vcf | grep -v "^#") <(bcftools query -f '%INFO/AF\n' in.vcf)
Comment: Cannot install ATHLATES, issues with bamtools by gogo21 • 0
yeah I am also getting the same issue is this issue due to wrong path provided ?
Comment: Dual index barcode demultiplex issue by BioRyder ▴ 220
Hello @devon / John Marshall We have noticed some exceptional cases in our recent Novaseq run. We were using 'Dual Index Bio Scientific-…
Comment: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2 by Bianca • 0
I found out why. I was loading plyr after dplyr, that was my problem. I removed library(plyr) from my code and only loaded (dplyr). Now it …
Answer: merging data; remove extra rows by swbarnes2 12k
Is this RSEM format? Or some other format that txinport can handle?
Comment: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2 by Bianca • 0
Hello, that did not work. It returned the mean value of all the data frames combined and the sum of all the data frames combined. It return…
Comment: What is the best way to rank genes for GSEA? by hermidalc ▴ 20
Just because you see something in published papers doesn't mean it's good or recommended, a lot of authors miss things or do not have a dee…
Comment: Cannot call haplotypes on bam by Shred ▴ 730
Sure. Use bwa instead
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