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1,000 results • Page 1 of 20
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4
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2
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232
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Forum: Bioinformatics: Where do I start
Sequencing
updated 2 days ago by 43k • written 2 days ago by ▴ 10
7
votes
7
replies
833
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 3 days ago by ★ 2.5k • written 4 days ago by • 0
1
vote
2
replies
322
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
2 days ago by Javier • 0
16
votes
10
replies
1.0k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 20 days ago by 5.3k • written 21 days ago by ★ 2.4k
1
vote
1
reply
207
views
Forum: Can I use this community for software development?
software-development
updated 24 days ago by 43k • written 25 days ago by • 0
5
votes
2
replies
369
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 25 days ago by 54k • written 25 days ago by • 0
0
votes
0
replies
166
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 4 weeks ago by 43k • written 4 weeks ago by • 0
1
vote
3
replies
464
views
Forum: Development plan for a bioinformatics database developer/coder
developer
5 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
636
views
Forum: Bioinformatics career transition
career forum
updated 5 weeks ago by ★ 16k • written 5 weeks ago by ▴ 20
4
votes
2
replies
466
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
5 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
749
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
6 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
156
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 1.2k
0
votes
2
replies
349
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
6 weeks ago by Dave Carlson ★ 1.7k
31
votes
12
replies
912
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
7 weeks ago by karlaarz ▴ 90
5
votes
4
replies
525
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 8 weeks ago by 141k • written 8 weeks ago by ▴ 10
1
vote
2
replies
354
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 8 weeks ago by 81k • written 8 weeks ago by ▴ 20
8
votes
7
replies
764
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 8 weeks ago by ▴ 120 • written 11 weeks ago by • 0
1
vote
0
replies
265
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 8 weeks ago by 161k • written 8 weeks ago by ★ 1.4k
4
votes
2
replies
359
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 10 weeks ago by ★ 5.8k • written 10 weeks ago by ▴ 10
8
votes
6
replies
2.8k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
191
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 11 weeks ago by 43k • written 11 weeks ago by ▴ 20
2
votes
3
replies
420
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
11 weeks ago by Ajay A Shettigar • 0
17
votes
11
replies
965
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
12 weeks ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.2k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 23 months ago by ▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 5.8k • written 3 months ago by ▴ 40
7
votes
6
replies
718
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 3 months ago by ▴ 20
21
votes
12
replies
3.5k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
404
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
3 months ago by LauferVA 4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 3 months ago by ★ 2.6k • written 3 months ago by ★ 27k
4
votes
3
replies
740
views
Forum: How to get started in bioinformatics
students
updated 3 months ago by 43k • written 3 months ago by ▴ 10
2
votes
2
replies
568
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 3 months ago by 43k • written 3 months ago by ▴ 40
0
votes
2
replies
3.2k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by 141k • written 3 months ago by ▴ 10
5
votes
3
replies
584
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
643
views
Forum: how to start Bioinformatics?
basics
updated 4 months ago by ★ 27k • written 4 months ago by • 0
19
votes
5
replies
1.1k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
911
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by 43k • written 4 months ago by • 0
1
vote
1
reply
479
views
Forum: want to work in open source project/project in bioinformatics
project
updated 4 months ago by 43k • written 4 months ago by • 0
3
votes
5
replies
999
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by 43k • written 5 months ago by • 0
21
votes
11
replies
2.5k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 4 months ago by 22k • written 13 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
613
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 40
0
votes
0
replies
363
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 months ago by 43k • written 5 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 months ago by tshtatland ▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 months ago by UT_FAN ▴ 40
0
votes
0
replies
437
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
6 months ago by ishwarvh • 0
0
votes
0
replies
345
views
Forum: Automated Checks And QA
retrospective
6 months ago by Sasha ▴ 830
7
votes
13
replies
1.3k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 6 months ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 6 months ago by ▴ 100 • written 8.0 years ago by 11k
3
votes
3
replies
889
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by 43k • written 7 months ago by • 0
19
votes
14
replies
2.1k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 7 months ago by 22k • written 7 months ago by ▴ 70
1,000 results • Page 1 of 20
Recent Votes
Answer: Plink merge errors.
Gene Set Enrichment Analysis
Gene Set Enrichment Analysis
A: Counting Number Of Bases In A Fastq File
Free/open source 23andme-like analysis
Comment: Free/open source 23andme-like analysis
Answer: Missing protein (VEGF-A) in String db
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Recent Replies
Answer: Plink merge errors. by Dinmukhamed • 0
I found answer https://www.biostars.org/p/101191/.
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file by Maria • 0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Comment: Free/open source 23andme-like analysis by Michael 54k
Noted that 'accurate' wasn't among your criteria ;) Anyway, most variant callers are free open-source software. However, for ancestry ana…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by Pierre Lindenbaum 161k
> server so I cannot use Blat for this purpose. blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by b.contreras.moreira ▴ 160
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`. It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software by colindaven 6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam by Hagen ▴ 10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably by Kai Xin • 0
will look into that. Thank you very much
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 510
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
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