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Forum: Pain points using commercial clouds
gpt tinybio
updated 7 months ago by ▴ 70 • written 7 months ago by ▴ 830
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 7 months ago by 81k • written 17 months ago by ▴ 30
3
votes
2
replies
607
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 7 months ago by 43k • written 7 months ago by ▴ 20
3
votes
6
replies
1.4k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
7 months ago by anasjamshed ▴ 120
2
votes
5
replies
938
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 6 months ago by 43k • written 7 months ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 7 months ago by ▴ 70 • written 7 months ago by ▴ 20
0
votes
0
replies
530
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 7 months ago by 43k • written 7 months ago by ▴ 20
3
votes
4
replies
1.3k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 7 months ago by 141k • written 7 months ago by ▴ 130
0
votes
0
replies
559
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 8 months ago by 43k • written 8 months ago by ▴ 10
1
vote
3
replies
752
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 8 months ago by 141k • written 8 months ago by ▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 7 months ago by 43k • written 8 months ago by ▴ 10
364
votes
58
replies
69k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 months ago by 43k • written 14.1 years ago by 100k
1
vote
2
replies
18k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
8 months ago by LauferVA 4.2k
0
votes
3
replies
3.8k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 16 months ago by ▴ 120
2
votes
3
replies
779
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 9 months ago by 141k • written 9 months ago by 4.2k
0
votes
2
replies
1.2k
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 10 months ago by 10k • written 10 months ago by • 0
33
votes
23
replies
4.0k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 10 months ago by 22k • written 10 months ago by 4.2k
7
votes
8
replies
1.9k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
10 months ago by K • 0
2
votes
3
replies
849
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 10 months ago by ★ 27k • written 10 months ago by • 0
0
votes
0
replies
436
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 10 months ago by 43k • written 10 months ago by ▴ 10
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 10 months ago by 43k • written 10 months ago by 4.2k
2
votes
2
replies
579
views
Forum: Colleges
Colleges india universities
updated 10 months ago by 43k • written 10 months ago by • 0
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 10 months ago by 43k • written 5.9 years ago by 5.3k
121
votes
33
replies
39k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by ★ 2.5k • written 10.6 years ago by 11k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 7 days ago by 22k • written 10.4 years ago by ★ 3.6k
26
votes
12
replies
7.4k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by ▴ 10 • written 10.4 years ago by ▴ 50
0
votes
2
replies
759
views
Forum: How to start in bioinformatics?
career
updated 11 months ago by 43k • written 12 months ago by • 0
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 9 weeks ago by • 0 • written 12 months ago by • 0
12
votes
5
replies
1.9k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
19
votes
14
replies
2.0k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
11 months ago by Simon ▴ 40
0
votes
0
replies
7.0k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
12 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.8k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 12 months ago by 4.2k • written 12 months ago by ▴ 30
4
votes
2
replies
689
views
Forum: advice on course selection for a bioinformatics career.
career
updated 13 months ago by 100k • written 13 months ago by • 0
0
votes
1
reply
528
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 13 months ago by 141k • written 13 months ago by • 0
4
votes
1
reply
773
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 13 months ago by 141k • written 13 months ago by 6.3k
5
votes
3
replies
907
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 13 months ago by 21k • written 13 months ago by ▴ 70
1
vote
0
replies
462
views
Forum: Penetrance versus heritability
penetrance heritability
13 months ago by tacrolimus ▴ 140
10
votes
15
replies
2.1k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 10 months ago by 22k • written 13 months ago by ★ 1.6k
8
votes
4
replies
953
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 13 months ago by 22k • written 13 months ago by ★ 1.5k
0
votes
0
replies
450
views
Forum: NGSrich - hg38
Coverage NGSrich
13 months ago by RK • 0
5
votes
5
replies
2.1k
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 14 months ago by ★ 27k • written 14 months ago by • 0
8
votes
8
replies
1.8k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 14 months ago by ▴ 10 • written 16 months ago by • 0
7
votes
3
replies
1.0k
views
Forum: Find a research paper for reproducing the results
research paper
updated 15 months ago by 141k • written 15 months ago by ★ 2.6k
1
vote
1
reply
779
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 16 months ago by ★ 4.3k • written 16 months ago by • 0
6
votes
12
replies
2.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
16 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.7k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 12 months ago by ▴ 590 • written 16 months ago by ▴ 350
18
votes
10
replies
2.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 16 months ago by 54k • written 16 months ago by 100k
7
votes
2
replies
882
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
14 months ago by Matthias Zepper 4.5k
5
votes
4
replies
1.3k
views
Forum: Best BAM viewer in 2022
sam bam
updated 10 months ago by 43k • written 16 months ago by ▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 months ago by ★ 1.4k • written 13.0 years ago by 22k
1,000 results • Page 2 of 20
Recent Votes
Answer: Rename multiple fastq.gz files
Comment: VCF to human friendly form?
Comment: Integration of transcriptomics and proteomics: difficult matchin names
BRAKER3 genome annotation
BRAKER3 genome annotation
Answer: read depth using samtools
Answer: BRAKER3 genome annotation
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Recent Replies
Answer: Integration of transcriptomics and proteomics: difficult matching names by ntsopoul ▴ 60
I found a good solution but it is really cumbersome. I use UniProt.ws to derive unique gene names (readable names) and also ambiguous name…
Comment: Merging Outputs from plink --assoc and --hardy to Produce Table by Koketso • 0
Thank you so much. How about calculating allelic odds ratios? Which plink/R command can I use for that?
Comment: Integration of transcriptomics and proteomics: difficult matching names by ATpoint 81k
For such analysis I always first translate everything to Ensembl Gene IDs (biomaRt is a good help here) and then I do the matching with thi…
Comment: Rename multiple fastq.gz files by bk11 ★ 2.3k
Of course! If it worked, accept the answer.
Comment: Integration of transcriptomics and proteomics: difficult matching names by GenoMax 141k
I can see this in the list GI:2387631 Nup42 O Gene nucleoporin 42 10.72 5 24369961 24389011 + AA867018|AB067574|AI426644|AK077066|AK07…
Comment: Rename multiple fastq.gz files by Jérémie • 0
Sorry, I misunderstood. Thank you so much for this.
Comment: Integration of transcriptomics and proteomics: difficult matching names by sansan_96 ▴ 70
Hello, This conversion tool has been useful to me, maybe it can help you: https://biit.cs.ut.ee/gprofiler/convert
Comment: BRAKER3 genome annotation by sansan_96 ▴ 70
Perhaps eggNOG-MAPPER can be useful for functional annotation: 1. https://academic.oup.com/nar/article/47/D1/D309/5173662 2. http://eggnog…
Comment: BRAKER3 genome annotation by Buffo ★ 2.4k
I suggest searching for the difference between structural annotation (identifying the coordinates of the ORFs in a sequence) and functional…
Comment: Integration of transcriptomics and proteomics: difficult matchin names by ntsopoul ▴ 60
looks good but I cannot find either Nupl2 nor Nup42 in the list!
Comment: Integration of transcriptomics and proteomics: difficult matchin names by GenoMax 141k
This table from Jackson labs that correlates many mouse identifiers with external databases will help. Look at the headers of the columns t…
Comment: Rename multiple fastq.gz files by bk11 ★ 2.3k
I just gave hint in the comment above. Please try this, it should work for you. #!/bin/bash for file in `ls *fastq.gz`; do f…
Comment: BRAKER3 genome annotation by andorjkiss ▴ 40
I also have this exact same question. I have my entire genome annotated and a braker.GTF file, but without protein "product" names.
Answer: trouble using sequenceTubeMap in chromium installed on WSL by anovak ▴ 80
`Error: spawn vg ENOENT` means that Node could not find the `vg` command when it tried to run it. It got back [the `ENOENT` error code](htt…
Answer: List of species in RepeatMasker Tool (species parameter) by Bioinfotec ▴ 10
From 4.1.1 version, The utilities 'queryTaxonomyDatabase.pl' and 'queryRepeatDatabase.pl' are no longer included, since that data…
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