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1,000 results • Page
1 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
3
replies
361
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 6 days ago by
Ram
40k • written 6 days ago by
S
• 0
19
votes
14
replies
898
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 days ago by
Jeremy Leipzig
21k • written 8 days ago by
vincenthus
▴ 70
19
votes
10
replies
875
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 12 days ago by
vincenthus
▴ 70 • written 28 days ago by
Sasha
▴ 720
9
votes
6
replies
1.3k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 14 days ago by
ATpoint
77k • written 10 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
296
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 20 days ago by
Ram
40k • written 20 days ago by
Fouad
▴ 20
3
votes
6
replies
717
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
28 days ago by
anasjamshed
▴ 120
2
votes
5
replies
554
views
6 follow
Forum:
Biostar as a next generation version
app
mobile
Biostar
software
tools
updated 28 days ago by
ATpoint
77k • written 29 days ago by
rj.rezwan
• 0
2
votes
9
replies
667
views
Forum:
open source projects looking for contributors
open-source
updated 15 days ago by
vincenthus
▴ 70 • written 29 days ago by
claudiofr
▴ 20
0
votes
0
replies
267
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 5 weeks ago by
Ram
40k • written 5 weeks ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
473
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 4 weeks ago by
GenoMax
134k • written 5 weeks ago by
James Reeve
▴ 130
0
votes
0
replies
223
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 5 weeks ago by
Ram
40k • written 5 weeks ago by
RM123
▴ 10
1
vote
3
replies
428
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 5 weeks ago by
GenoMax
134k • written 6 weeks ago by
morovatunc
▴ 550
11
votes
8
replies
767
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 27 days ago by
Ram
40k • written 7 weeks ago by
joey
▴ 10
361
votes
58
replies
64k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
books
education
written 13.6 years ago by
Istvan Albert
98k
1
vote
2
replies
4.9k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
9 weeks ago by
LauferVA
3.7k
0
votes
3
replies
3.6k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 10 months ago by
SushiRoll
▴ 110
2
votes
3
replies
464
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 11 weeks ago by
GenoMax
134k • written 11 weeks ago by
LauferVA
3.7k
0
votes
2
replies
619
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 3 months ago by
Asaf
10k • written 3 months ago by
Davide
• 0
33
votes
23
replies
3.0k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 3 months ago by
Jeremy Leipzig
21k • written 3 months ago by
LauferVA
3.7k
7
votes
8
replies
1.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
3 months ago by
K
• 0
2
votes
3
replies
528
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 3 months ago by
Mensur Dlakic
★ 25k • written 3 months ago by
Andy
• 0
0
votes
0
replies
232
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 3 months ago by
Ram
40k • written 3 months ago by
nick_brittain55
▴ 10
7
votes
4
replies
740
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 3 months ago by
Ram
40k • written 3 months ago by
LauferVA
3.7k
2
votes
2
replies
329
views
Forum:
Colleges
Colleges
india
universities
updated 3 months ago by
Ram
40k • written 3 months ago by
mahimanepalli36
• 0
19
votes
15
replies
1.5k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 4 months ago by
Ram
40k • written 5.4 years ago by
Bastien Hervé
5.3k
120
votes
33
replies
37k
views
24 follow
Forum:
Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 months ago by
carlopecoraro2
★ 2.4k • written 10.1 years ago by
Eric Normandeau
11k
100
votes
38
replies
29k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 28 days ago by
Jeremy Leipzig
21k • written 9.9 years ago by
14134125465346445
★ 3.6k
26
votes
12
replies
7.1k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 months ago by
zyan2005
▴ 10 • written 9.9 years ago by
johnblue81
▴ 50
170
votes
43
replies
17k
views
25 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 months ago by
zx8754
11k • written 10.5 years ago by
Istvan Albert
98k
0
votes
2
replies
493
views
Forum:
How to start in bioinformatics?
career
updated 4 months ago by
Ram
40k • written 5 months ago by
caffrey
• 0
3
votes
4
replies
869
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
5 months ago by
cwaingartentrabajo
• 0
12
votes
5
replies
1.2k
views
6 follow
Forum:
Bioinformatics opportunities in Europe?
career
updated 5 months ago by
alwayshope
▴ 30 • written 5 months ago by
melaniem
• 0
18
votes
14
replies
1.4k
views
7 follow
Forum:
What's the general view on point & click bioinformatics for routine analyses?
ngs
RNA-Seq
next-gen-sequencing
5 months ago by
Simon
▴ 40
0
votes
0
replies
6.8k
views
Forum:
Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline
Calling
Variant
Capture
Sequencing
5 months ago by
Alexandre Eeckhoutte
• 0
11
votes
11
replies
1.2k
views
7 follow
Forum:
Any tips in landing a bioinformatic job?
Spain
R
updated 5 months ago by
LauferVA
3.7k • written 6 months ago by
Jorge
▴ 30
4
votes
2
replies
454
views
Forum:
advice on course selection for a bioinformatics career.
career
updated 6 months ago by
Istvan Albert
98k • written 6 months ago by
Aaron
• 0
0
votes
1
reply
350
views
Forum:
Graduate in molecular biology and genetics
biology
genetics
Molecular
updated 6 months ago by
GenoMax
134k • written 6 months ago by
zamzammahmud20
• 0
4
votes
1
reply
502
views
Forum:
Open problems in genomics 2023
genomics
pangenomics
updated 6 months ago by
GenoMax
134k • written 6 months ago by
colindaven
5.5k
5
votes
3
replies
628
views
Forum:
Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 6 months ago by
Joe
21k • written 6 months ago by
Cornelius
▴ 70
18
votes
10
replies
1.6k
views
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
6 months ago by
bompipi95
▴ 130
1
vote
0
replies
300
views
Forum:
Penetrance versus heritability
penetrance
heritability
6 months ago by
tacrolimus
▴ 140
10
votes
15
replies
1.4k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 3 months ago by
Jeremy Leipzig
21k • written 7 months ago by
Maximilian Haeussler
★ 1.6k
8
votes
4
replies
654
views
Forum:
Implementing FAIR data principles to a bioinformatics lab
data
updated 7 months ago by
Jeremy Leipzig
21k • written 7 months ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
314
views
Forum:
NGSrich - hg38
Coverage
NGSrich
7 months ago by
RK
• 0
5
votes
5
replies
986
views
Forum:
Bioinformatics - how to start?
molecular-biology
updated 7 months ago by
Mensur Dlakic
★ 25k • written 7 months ago by
Abigail
• 0
8
votes
8
replies
1.4k
views
7 follow
Forum:
A Computer Scientist who wants to start Bioinformatics
computer-science
books
resources
ngs
updated 8 months ago by
omaridris5315
▴ 10 • written 9 months ago by
bjorn
• 0
7
votes
3
replies
824
views
Forum:
Find a research paper for reproducing the results
research
paper
updated 8 months ago by
GenoMax
134k • written 8 months ago by
grant.hovhannisyan
★ 2.5k
1
vote
1
reply
583
views
Forum:
Gene ontology vs Gene set enrichment
set
enrichment
GSEA
ontology
Gene
analysis
gene
updated 9 months ago by
DareDevil
★ 3.3k • written 9 months ago by
Emmykyz
• 0
6
votes
12
replies
1.4k
views
Forum:
How to decide when to have local hardware vs cloud computing?
hardware
computational-resources
cloud
9 months ago by
Lluís R.
★ 1.2k
15
votes
11
replies
2.3k
views
7 follow
Forum:
BioStars and ChatGPT
ChatGPT
Meta
GPT
updated 5 months ago by
ponganta
▴ 590 • written 9 months ago by
Jack Tierney
▴ 350
1,000 results • Page
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Recent Votes
Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
Answer: Number of accessible regions included by DESeq2 to generate the PCA plot with th
Updated List of Unix tutorials 2023
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Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
Comment: CollectRnaSeqMetrics (Picard) output to convert FeatureCounts into TPM
Comment: ncbi error report log for validate fastq issue
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Comment: Network analysis with cytoscape
by
Yogi
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A few questions. 1. What does the network represent? 2. Can you insert a high level picture of the network (or pictures) if you want to zo…
Answer: Chip-Seq and correlation of bam file
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jared.andrews07
★ 15k
Use [deepTools' plotCorrelation function](https://deeptools.readthedocs.io/en/develop/content/tools/plotCorrelation.html).
Answer: Transcription factor co-localization p-values
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jared.andrews07
★ 15k
[regioneR](https://bioconductor.org/packages/release/bioc/html/regioneR.html) seems to be what you want.
Comment: Complex multifactorial DE analysis with limma/edgeR based on rnaseq data
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> Our major biological questions are: to have a general comparison of cancer vs normal “treatment” conditions; In addition if doable, to co…
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Chris
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Thanks @luffy! Great material but seem they didn't mention how to customize the background genes depend on our data.
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by
camillab.
▴ 140
I have calculate from this [tutorial][1]. so basically it retrieve the normalized counts matrix using `Deseq2` . Do you think it is correct…
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`dorado` can't demultiplex data as yet (v.0.3.4). Also no adapter trimming. So something to keep in mind if you are switching. To address …
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Let the data speak. If there's no difference, then there's no difference. Human clinical data is always messy and unpredictable, especiall…
Comment: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
Ram
40k
I don't think they bought the Mac Studio just for the MiniON. If they did, that might be overkill. All things considered, I'd prefer an App…
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by
ATpoint
77k
Wondering why investing all that money for such an overpriced piece of hardware. You could get an equivalent Windows or Linux workstation f…
Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
Christopher
▴ 10
I'm using a Mac Studio with M1 Ultra chip to sequence with a MinION Mk1B now and it's working great! Fast basecalling and adaptive sequenci…
Comment: ncbi error report log for validate fastq issue
by
GenoMax
134k
You may want to use `--split-files` instead. With your `--split-spot` option looks like you end up with interleaved data files. Unless you …
Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
by
Ram
40k
Nope, I kinda gave up. I got to the image on what fragment size is (https://www.biostars.org/p/106291/#106344) but cannot figure out how to…
Comment: ncbi error report log for validate fastq issue
by
1769mkc
★ 1.1k
I got it working after i updated the sra lite option while using vdb-config -i the output is what i see like this docker run -t -…
Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
by
camillab.
▴ 140
yeah but I am sure you know how to do it, whereas I am just go more confused :/
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