Limit : this year
all time today this week this month this year
416 results • Page 1 of 9
Sort: Rank
Rank Views Votes Replies
4
votes
4
replies
494
views
Forum: Cloud Computing Services available?
resources Services Computing Cloud Bioinformatics
updated 1 day ago by ★ 1.2k • written 5 weeks ago by ★ 2.1k
2
votes
7
replies
368
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 11 days ago by 36k • written 11 days ago by ▴ 20
6
votes
3
replies
285
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 12 days ago by ★ 1.4k • written 13 days ago by 15k
0
votes
1
reply
127
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 17 days ago by 64k • written 17 days ago by • 0
4
votes
2
replies
329
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
teaching biology bioinformatics
21 days ago by Vincent Laufer ★ 2.2k
0
votes
0
replies
123
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
23 days ago by goddy93 • 0
3
votes
1
reply
175
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 23 days ago by 36k • written 26 days ago by • 0
5
votes
2
replies
232
views
Forum: Skills for industry career in bioinformatics
industry
updated 27 days ago by 9.3k • written 27 days ago by ▴ 10
9
votes
6
replies
442
views
Forum: Programming languages in industry
programming language
updated 4 weeks ago by 9.4k • written 4 weeks ago by ▴ 20
2
votes
6
replies
415
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
5 weeks ago by Antonio R. Franco ★ 4.9k
1
vote
0
replies
135
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
6 weeks ago by Francesco ▴ 20
3
votes
2
replies
311
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
7 weeks ago by BioInfoBeginner ▴ 40
0
votes
0
replies
180
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf genotypes bcftools bioinformatics
7 weeks ago by pabe ▴ 10
1.1k
votes
181
replies
44k
views
106 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 7 weeks ago by ★ 2.2k • written 11.3 years ago by 20k
24
votes
6
replies
3.6k
views
6 follow
Forum: Awk in Bioinformatics
awk Forum shell perl
written 4.0 years ago by ★ 9.1k
7
votes
8
replies
706
views
Forum: Can we lock posts related to merging vcf files?
forum
updated 9 weeks ago by 94k • written 9 weeks ago by ★ 2.2k
3
votes
3
replies
363
views
Forum: Microbiologist as a career
discussion question
updated 9 weeks ago by ★ 4.5k • written 9 weeks ago by 10
0
votes
0
replies
176
views
Forum: Bioinformatics for understanding cancer and other diseases
omics bioinformatics
9 weeks ago by pixie@bioinfo ★ 1.4k
1
vote
3
replies
360
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 9 weeks ago by ★ 2.9k • written 9 weeks ago by • 0
3
votes
3
replies
316
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 9 weeks ago by 26k • written 9 weeks ago by ★ 2.8k
0
votes
2
replies
327
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 10 weeks ago by 52k • written 10 weeks ago by ▴ 970
33
votes
11
replies
7.1k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
methylation computational tools Forum
updated 10 weeks ago by • 0 • written 6.8 years ago by ★ 9.1k
6
votes
8
replies
560
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
10 weeks ago by stan.aanhane ▴ 30
7
votes
6
replies
490
views
Forum: How to learn bioinformatics?
bioinformatics
10 weeks ago by sakichwan ▴ 10
2
votes
2
replies
326
views
Forum: Project ideas
project-ideas
updated 11 weeks ago by 52k • written 11 weeks ago by • 0
0
votes
0
replies
142
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
12 weeks ago by ch333 • 0
1
vote
6
replies
380
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 6 weeks ago by 36k • written 3 months ago by • 0
2
votes
2
replies
307
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
gene bioinformatics GWAS NGS discovery WGS
updated 3 months ago by 64k • written 3 months ago by • 0
5
votes
5
replies
424
views
Forum: Best book introducing R programming?
coding R
3 months ago by Scottie ▴ 10
4
votes
6
replies
403
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
3 months ago by Matthias Zepper ★ 1.4k
0
votes
0
replies
250
views
Forum: commonly-used bioinformatics pipeline
Galaxy Bioinformatics
updated 3 months ago by 14k • written 3 months ago by ▴ 120
0
votes
0
replies
167
views
Forum: Master's topic in Bioinformatics
Bio-informatique
3 months ago by Badji Oumar • 0
13
votes
15
replies
2.3k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
biostar Forum
updated 3 months ago by 118k • written 7.1 years ago by 94k
0
votes
1
reply
222
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
3 months ago by hkrtrainings408 • 0
47
votes
24
replies
3.9k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
bioinformatics msc Forum
updated 3 months ago by ▴ 50 • written 4.8 years ago by 52k
5
votes
8
replies
622
views
Forum: SQL-why do we need it in Bioinformatics ?
Programming Bioinformatics
4 months ago by iibrams07 ▴ 10
6
votes
7
replies
443
views
Forum: Generic avatars, not gravatars?
technical avatar
4 months ago by Michael Dondrup 52k
2
votes
0
replies
373
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
4 months ago by rohitsatyam102 ▴ 580
0
votes
0
replies
174
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
4 months ago by jeronimocid93 • 0
2
votes
2
replies
382
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 6 weeks ago by 36k • written 4 months ago by ▴ 20
12
votes
9
replies
2.5k
views
8 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
DAVID enrichment ontology gene analysis GSEA
updated 4 months ago by 94k • written 4 months ago by ★ 1.7k
0
votes
0
replies
153
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
4 months ago by akamonto • 0
2
votes
5
replies
394
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 4 months ago by 36k • written 4 months ago by ▴ 500
0
votes
0
replies
206
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 5 months ago by 64k • written 5 months ago by • 0
29
votes
10
replies
4.4k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
updated 5 months ago by ★ 2.4k • written 4.4 years ago by 20k
3
votes
6
replies
1.6k
views
Forum: A Css For Small Screen Devices?
meta Forum
written 10.3 years ago by ★ 3.6k
10
votes
6
replies
810
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 6 weeks ago by 36k • written 5 months ago by ▴ 20
0
votes
3
replies
381
views
Forum: Project Topics on bioinformatic
biology Nutrition Data Technology analysis Molecular Coding
updated 5 months ago by 21k • written 5 months ago by • 0
0
votes
4
replies
461
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 5 months ago by 118k • written 5 months ago by ▴ 10
2
votes
0
replies
239
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
5 months ago by rohitsatyam102 ▴ 580
416 results • Page 1 of 9
Recent Votes
Answer: convert .bed format to .txt format
Answer: convert .bed format to .txt format
Answer: Extract nucleotide sequence from a RefSeq Transcript ID
Answer: Extract nucleotide sequence from a RefSeq Transcript ID
Answer: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2
Answer: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2
find / score transcription factors based on motifs
Recent Locations • All
United States, 5 minutes ago
Iran, 5 minutes ago
Santiago, 12 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 14 minutes ago
Portugal, 15 minutes ago
Bologna, 17 minutes ago
Australia, 22 minutes ago
Recent Awards • All
Popular Question to dpc ▴ 240
Popular Question to eennadi ▴ 20
Scholar to oz ▴ 10
Popular Question to mohammedtoufiq91 ▴ 160
Scholar to a.zielezinski 10k
Popular Question to Zara ▴ 20
Popular Question to fawazfebin ▴ 100
Recent Replies
Answer: Stringtie skips some reference genes by Antonio R. Franco ★ 4.9k
If using RNA, I would expect not having the complete set of genes being expressed
Comment: convert .bed format to .txt format by rheab1230 ▴ 60
Yes, I was able to view it. Thank you.
Comment: Extract nucleotide sequence from a RefSeq Transcript ID by Vincent Laufer ★ 2.2k
thank you!!!!!!!!!!! this was so helpful. makes me think we convenient browser based tools etc. i really appreciate you.
Answer: Extract nucleotide sequence from a RefSeq Transcript ID by GenoMax 118k
Using [**Entrezdirect**][1]. Example for getting nucleotides 1101 to 1120. $ efetch -db nuccore -id NM_001346941.2 -seq_start 1101 -se…
Comment: Using whole exome data from different protocols by m.bamajboor • 0
I have similer question regarding the kits used for sequencing. I'm in a process of calculating the allele frequency of a group of samples,…
Comment: vcf2maf allele frequency not converting by hamrejr • 0
Thanks. I am trying to get this on the maf from the vcf. So the command I am using is: vcf2maf.pl --input-vcf .vcf --output-maf .vcf.m…
Comment: [RNAseq, featureCounts] Can paired-end data be processed as single end? by Luka • 0
The IDs were indeed a problem, the processing worked after changing them. Thanks for all the help!
Answer: vcf2maf allele frequency not converting by Pierre Lindenbaum 147k
not tested but that could be: paste <(bcftools view in.vcf | grep -v "^#") <(bcftools query -f '%INFO/AF\n' in.vcf)
Comment: Cannot install ATHLATES, issues with bamtools by gogo21 • 0
yeah I am also getting the same issue is this issue due to wrong path provided ?
Comment: Dual index barcode demultiplex issue by BioRyder ▴ 220
Hello @devon / John Marshall We have noticed some exceptional cases in our recent Novaseq run. We were using 'Dual Index Bio Scientific-…
Comment: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2 by Bianca • 0
I found out why. I was loading plyr after dplyr, that was my problem. I removed library(plyr) from my code and only loaded (dplyr). Now it …
Answer: merging data; remove extra rows by swbarnes2 12k
Is this RSEM format? Or some other format that txinport can handle?
Comment: R - cleanest way to calculate mean of a columnX in dataset1, columnZ in dataset2 by Bianca • 0
Hello, that did not work. It returned the mean value of all the data frames combined and the sum of all the data frames combined. It return…
Comment: What is the best way to rank genes for GSEA? by hermidalc ▴ 20
Just because you see something in published papers doesn't mean it's good or recommended, a lot of authors miss things or do not have a dee…
Comment: Cannot call haplotypes on bam by Shred ▴ 730
Sure. Use bwa instead
Traffic: 816 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6