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3
votes
3
replies
355
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 5 days ago by 40k • written 5 days ago by • 0
19
votes
14
replies
874
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 6 days ago by 21k • written 7 days ago by ▴ 70
19
votes
10
replies
866
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 11 days ago by ▴ 70 • written 27 days ago by ▴ 720
9
votes
6
replies
1.3k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 13 days ago by 76k • written 10 months ago by ▴ 30
3
votes
2
replies
293
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 19 days ago by 40k • written 19 days ago by ▴ 20
3
votes
6
replies
709
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
27 days ago by anasjamshed ▴ 120
2
votes
5
replies
547
views
6 follow
Forum: Biostar as a next generation version
app mobile Biostar software tools
updated 27 days ago by 76k • written 28 days ago by • 0
2
votes
9
replies
662
views
Forum: open source projects looking for contributors
open-source
updated 14 days ago by ▴ 70 • written 28 days ago by ▴ 20
0
votes
0
replies
264
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 4 weeks ago by 40k • written 4 weeks ago by ▴ 20
3
votes
4
replies
470
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 4 weeks ago by 134k • written 5 weeks ago by ▴ 130
0
votes
0
replies
222
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 5 weeks ago by 40k • written 5 weeks ago by ▴ 10
1
vote
3
replies
427
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 5 weeks ago by 134k • written 6 weeks ago by ▴ 550
11
votes
8
replies
763
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 26 days ago by 40k • written 7 weeks ago by ▴ 10
361
votes
58
replies
64k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
written 13.6 years ago by 98k
1
vote
2
replies
4.8k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
9 weeks ago by LauferVA 3.7k
0
votes
3
replies
3.6k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 9 months ago by ▴ 110
2
votes
3
replies
463
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 11 weeks ago by 134k • written 11 weeks ago by 3.7k
0
votes
2
replies
616
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 3 months ago by 10k • written 3 months ago by • 0
33
votes
23
replies
2.9k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 3 months ago by 21k • written 3 months ago by 3.7k
7
votes
8
replies
1.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
3 months ago by K • 0
2
votes
3
replies
526
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 3 months ago by ★ 25k • written 3 months ago by • 0
0
votes
0
replies
231
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 3 months ago by 40k • written 3 months ago by ▴ 10
7
votes
4
replies
735
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 3 months ago by 40k • written 3 months ago by 3.7k
2
votes
2
replies
329
views
Forum: Colleges
Colleges india universities
updated 3 months ago by 40k • written 3 months ago by • 0
19
votes
15
replies
1.5k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 4 months ago by 40k • written 5.4 years ago by 5.3k
120
votes
33
replies
37k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 months ago by ★ 2.3k • written 10.1 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 27 days ago by 21k • written 9.9 years ago by ★ 3.6k
26
votes
12
replies
7.1k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 months ago by ▴ 10 • written 9.9 years ago by ▴ 50
170
votes
43
replies
17k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 months ago by 11k • written 10.5 years ago by 98k
0
votes
2
replies
493
views
Forum: How to start in bioinformatics?
career
updated 4 months ago by 40k • written 5 months ago by • 0
3
votes
4
replies
867
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
5 months ago by cwaingartentrabajo • 0
12
votes
5
replies
1.2k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 5 months ago by ▴ 30 • written 5 months ago by • 0
18
votes
14
replies
1.4k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
5 months ago by Simon ▴ 40
0
votes
0
replies
6.8k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
5 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.2k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 5 months ago by 3.7k • written 6 months ago by ▴ 30
4
votes
2
replies
452
views
Forum: advice on course selection for a bioinformatics career.
career
updated 6 months ago by 98k • written 6 months ago by • 0
0
votes
1
reply
350
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 6 months ago by 134k • written 6 months ago by • 0
4
votes
1
reply
500
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 6 months ago by 134k • written 6 months ago by 5.5k
5
votes
3
replies
627
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 6 months ago by 21k • written 6 months ago by ▴ 70
18
votes
10
replies
1.5k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
6 months ago by bompipi95 ▴ 130
1
vote
0
replies
300
views
Forum: Penetrance versus heritability
penetrance heritability
6 months ago by tacrolimus ▴ 140
10
votes
15
replies
1.4k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 3 months ago by 21k • written 7 months ago by ★ 1.6k
8
votes
4
replies
650
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 7 months ago by 21k • written 7 months ago by ★ 1.5k
0
votes
0
replies
313
views
Forum: NGSrich - hg38
Coverage NGSrich
7 months ago by RK • 0
5
votes
5
replies
980
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 7 months ago by ★ 25k • written 7 months ago by • 0
8
votes
8
replies
1.4k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 8 months ago by ▴ 10 • written 9 months ago by • 0
7
votes
3
replies
822
views
Forum: Find a research paper for reproducing the results
research paper
updated 8 months ago by 134k • written 8 months ago by ★ 2.5k
1
vote
1
reply
582
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 9 months ago by ★ 3.3k • written 9 months ago by • 0
6
votes
12
replies
1.4k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
9 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.2k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 5 months ago by ▴ 590 • written 9 months ago by ▴ 350
1,000 results • Page 1 of 20
Recent Votes
Answer: Unable to build applet in DNAnexus, .jar file not found
Answer: Unable to build applet in DNAnexus, .jar file not found
Comment: Spaceranger missing spatial coordinates [Discussion]
Answer: Low Alignment rate
Comment: Filtering VCF to divide with equal sizes
Answer: How to plot proportion of cells in each cluster with scanpy?
Comment: How the first sequencing product removed in pair end sequencing
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Recent Replies
Comment: Troubles launch IGV on Linux(Debian) by morovatunc ▴ 550
Disclaimer: My comment could be totally unrelated. I would give these a try if you have noone comment/answer your problem. I have had this…
Comment: How to check RNAseq support for annotated genes? by Michael 53k
> I tried it using STAR to map the transcript to the annotation gtf file That is not what STAR is for. STAR is for aligning short reads in…
Comment: Low Alignment rate by Mehwish • 0
Thanks alot! This worked out for me https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.toplevel.fa.gz …
Comment: Violin plot (Monocle 3) - Troubleshooting by Ram 40k
The error message tells me there is the possibility of a conflicting function called `plot_genes_violin` that accepts one parameter and err…
Comment: Violin plot (Monocle 3) - Troubleshooting by bk11 ★ 1.2k
I m not sure why you have problem there. I do not encounter any problem. May be your gene list are not present in your source object. Pleas…
Comment: Violin plot (Monocle 3) - Troubleshooting by Ram 40k
What is the output to: ```r help.search('plot_genes_violin', agrep=FALSE, ignore.case=FALSE, fields=c('name')) lsf.str() sessionInfo() ```
Comment: Violin plot (Monocle 3) - Troubleshooting by seattlescientist_01 • 0
I see the error message but I'm confused on what it's telling me.
Answer: Bacterial Pangenome Analysis by liorglic ★ 1.2k
I am not sure I understand why you think there is a problem with your analysis. It makes perfect sense that different blastp cutoffs produc…
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Thank you for replying again. The "type" still causes issues but the reply by Radu Tanasa worked.
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Thank you so much. That worked perfectly and it was much faster than what I was trying.
Answer: How to plot proportion of cells in each cluster with scanpy? by Radu Tanasa ▴ 60
Hi. If I get this right, you simply need to compute the percentage of cells in each cluster at the dataset level? ```py import pandas as p…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by ATpoint 76k
Why would that be an advantage?
Comment: How to plot proportion of cells in each cluster with scanpy? by bk11 ★ 1.2k
The following code will write percentage in your stacked barplot. cross_tab = pd.crosstab(adata.obs['leiden_0.6'],adata.obs['typ…
Comment: How to check RNAseq support for annotated genes? by BioinfoBee • 0
@juke34 Thanks for the suggestion. I wonder if bedtool coverage or intersect can be used to check the transcript support or coverage for ea…
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Because that was the code from the link. It is how they specified they had 2 groups of samples but I don't have 2 groups. Sorry for the con…
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