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1,000 results • Page 2 of 20
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3
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2
replies
607
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Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 7 months ago by 43k • written 7 months ago by ▴ 20
3
votes
6
replies
1.4k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
7 months ago by anasjamshed ▴ 120
2
votes
5
replies
938
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 6 months ago by 43k • written 7 months ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 7 months ago by ▴ 70 • written 7 months ago by ▴ 20
0
votes
0
replies
530
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 7 months ago by 43k • written 7 months ago by ▴ 20
3
votes
4
replies
1.3k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 7 months ago by 141k • written 7 months ago by ▴ 130
0
votes
0
replies
558
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 8 months ago by 43k • written 8 months ago by ▴ 10
1
vote
3
replies
751
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 8 months ago by 141k • written 8 months ago by ▴ 550
11
votes
8
replies
1.3k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 7 months ago by 43k • written 8 months ago by ▴ 10
364
votes
58
replies
69k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 months ago by 43k • written 14.1 years ago by 100k
1
vote
2
replies
18k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
8 months ago by LauferVA 4.2k
0
votes
3
replies
3.8k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 16 months ago by ▴ 120
2
votes
3
replies
779
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 9 months ago by 141k • written 9 months ago by 4.2k
0
votes
2
replies
1.2k
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 10 months ago by 10k • written 10 months ago by • 0
33
votes
23
replies
4.0k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 10 months ago by 22k • written 10 months ago by 4.2k
7
votes
8
replies
1.9k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
10 months ago by K • 0
2
votes
3
replies
848
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 10 months ago by ★ 27k • written 10 months ago by • 0
0
votes
0
replies
435
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 10 months ago by 43k • written 10 months ago by ▴ 10
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 10 months ago by 43k • written 10 months ago by 4.2k
2
votes
2
replies
578
views
Forum: Colleges
Colleges india universities
updated 10 months ago by 43k • written 10 months ago by • 0
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 10 months ago by 43k • written 5.9 years ago by 5.3k
121
votes
33
replies
39k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by ★ 2.5k • written 10.6 years ago by 11k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 7 days ago by 22k • written 10.4 years ago by ★ 3.6k
26
votes
12
replies
7.4k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by ▴ 10 • written 10.4 years ago by ▴ 50
0
votes
2
replies
758
views
Forum: How to start in bioinformatics?
career
updated 11 months ago by 43k • written 12 months ago by • 0
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 9 weeks ago by • 0 • written 12 months ago by • 0
12
votes
5
replies
1.9k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
19
votes
14
replies
2.0k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
11 months ago by Simon ▴ 40
0
votes
0
replies
7.0k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
12 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.8k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 12 months ago by 4.2k • written 12 months ago by ▴ 30
4
votes
2
replies
688
views
Forum: advice on course selection for a bioinformatics career.
career
updated 13 months ago by 100k • written 13 months ago by • 0
0
votes
1
reply
528
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 13 months ago by 141k • written 13 months ago by • 0
4
votes
1
reply
773
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 13 months ago by 141k • written 13 months ago by 6.3k
5
votes
3
replies
907
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 13 months ago by 21k • written 13 months ago by ▴ 70
1
vote
0
replies
462
views
Forum: Penetrance versus heritability
penetrance heritability
13 months ago by tacrolimus ▴ 140
10
votes
15
replies
2.0k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 10 months ago by 22k • written 13 months ago by ★ 1.6k
8
votes
4
replies
953
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 13 months ago by 22k • written 13 months ago by ★ 1.5k
0
votes
0
replies
450
views
Forum: NGSrich - hg38
Coverage NGSrich
13 months ago by RK • 0
5
votes
5
replies
2.1k
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 14 months ago by ★ 27k • written 14 months ago by • 0
8
votes
8
replies
1.8k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 14 months ago by ▴ 10 • written 16 months ago by • 0
7
votes
3
replies
1.0k
views
Forum: Find a research paper for reproducing the results
research paper
updated 15 months ago by 141k • written 15 months ago by ★ 2.6k
1
vote
1
reply
779
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 16 months ago by ★ 4.3k • written 16 months ago by • 0
6
votes
12
replies
2.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
16 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.7k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 12 months ago by ▴ 590 • written 16 months ago by ▴ 350
18
votes
10
replies
2.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 16 months ago by 54k • written 16 months ago by 100k
7
votes
2
replies
880
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
14 months ago by Matthias Zepper 4.5k
5
votes
4
replies
1.3k
views
Forum: Best BAM viewer in 2022
sam bam
updated 10 months ago by 43k • written 16 months ago by ▴ 70
1.2k
votes
206
replies
58k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 months ago by ★ 1.4k • written 13.0 years ago by 22k
15
votes
13
replies
4.0k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 3 months ago by 3.9k • written 17 months ago by ▴ 30
0
votes
2
replies
958
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 16 months ago by 43k • written 18 months ago by • 0
1,000 results • Page 2 of 20
Recent Votes
A: Need the first and the third element after doing strsplit
OrthoFinder: Diamond or Blast? Which is better?
OrthoFinder: Diamond or Blast? Which is better?
Answer: OrthoFinder: Diamond or Blast? Which is better?
Answer: OrthoFinder: Diamond or Blast? Which is better?
A: Running Blastall Before MCL for Paralog Clustering
A: Running Blastall Before MCL for Paralog Clustering
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Recent Replies
Answer: gene body coverage with RSeqQC by jkim ▴ 170
http://qualimap.conesalab.org/doc_html/index.html Never tried rseqc, but qualimap provides a gene body coverage plot also.
Comment: How to get the reference panel sites for TOPMed hg37 and 38 by bk11 ★ 2.3k
You can simply impute your genotyped data in TOPMed server. In that way you do not have to deal with downloading the reference panels (not …
Answer: Using adonis to include a random effect by LChart 3.9k
> why the first model doesn't have stats for both variables? Your variables are multicollinear. This will always be true if you have mul…
Comment: How to row normalize a matrixplot? by bioinfo ▴ 150
Thank you. That is what I ended up doing.
Comment: bash script by Ram 43k
What "error code at the top" are you talking about? Error code in response to the `srun -N 1 -t 0:01:00 bash -c "uname -a"` command? Also, …
Answer: how to get the variance explained by the independent variable from multivariate by LChart 3.9k
More explicitly: ```R G <- mdmr::gower(distance.matrix) eig <- eigen(G) U <- eig$vectors ## this is the MDS embedding matrix lambd…
Comment: bash script by bestone ▴ 30
You write this "I noticed there may be a few parameters required for a SLURM job that could be missing from your script (partition to use, …
Comment: RNAseq 1 control 2 different treatment by sansan_96 ▴ 70
I think what you should do is do differential expression for your two contrasts: treatment 1 vs control and treatment 2 vs control. DESeq2 …
Comment: how to get the variance explained by the independent variable from multivariate by leranwangcs ▴ 120
Thanks for your response! I have no statistics background so a bit hard to figure our the equation you provide with. I just want to find so…
Comment: Extracting information from gff3 file produced by augustus by Istvan Albert 100k
you should be more specific as to what you are trying to do. in general parsing a GFF file, while error prone and annoying it is reasonabl…
Comment: Best way to deal with overlapping read names in merged BAM files by GenoMax 141k
See: https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups `\t` is tab <!-- this is a test -->
Comment: Best way to deal with overlapping read names in merged BAM files by shpak.max ▴ 50
Thanks. If I understand correctly, this adds ID1 to the rg header in the first bam, etc. Could you please explain the syntax of the tsM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files by Pierre Lindenbaum 161k
not tested: samtools addreplacerg -r "@RG\tID:ID1\tSM:SAMPLE1 -O BAM -o new1.bam old1.bam samtools addreplacerg -r "@RG\tID:ID2\tSM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files by shpak.max ▴ 50
Could you please direct me to an example which uses addreplacerg across an entire bamfile (i.e. I would need to add a read group tag for ea…
Answer: Best way to deal with overlapping read names in merged BAM files by Pierre Lindenbaum 161k
> I'm not sure how and where to best implement the suggested corrections of fixing the SM tag use to change the read group of one or more …
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