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1.2k
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206
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52k
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108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 3 months ago by ★ 1.2k • written 12.5 years ago by 21k
61
votes
70
replies
12k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 7 months ago by 40k • written 9.5 years ago by 98k
279
votes
69
replies
19k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 7 months ago by 40k • written 12.2 years ago by ▴ 160
307
votes
65
replies
21k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 12 months ago by 86k • written 13.6 years ago by 28k
134
votes
65
replies
4.6k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 3 months ago by 40k • written 3.8 years ago by ▴ 880
286
votes
64
replies
19k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 12 months ago by 86k • written 12.5 years ago by 22k
144
votes
62
replies
10k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 7 months ago by 40k • written 12.6 years ago by ★ 2.9k
206
votes
58
replies
39k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 7 months ago by 40k • written 10.4 years ago by 9.7k
361
votes
58
replies
64k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
written 13.6 years ago by 98k
65
votes
57
replies
6.9k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 19 months ago by 40k • written 8.9 years ago by ▴ 20
145
votes
56
replies
7.9k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 7 months ago by 40k • written 10.5 years ago by 98k
290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 7 months ago by 40k • written 10.4 years ago by 10k
113
votes
53
replies
5.9k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 3 months ago by 40k • written 4.5 years ago by ▴ 170
93
votes
50
replies
15k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 6 months ago by 40k • written 9.8 years ago by 98k
68
votes
48
replies
7.6k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 4 months ago by 40k • written 6.2 years ago by 98k
262
votes
48
replies
21k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 7 months ago by ★ 1.0k • written 8.4 years ago by ★ 4.2k
105
votes
46
replies
12k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 7 months ago by 40k • written 10.1 years ago by ★ 1.1k
125
votes
46
replies
46k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 5 months ago by 40k • written 7.6 years ago by ★ 3.2k
128
votes
44
replies
30k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 6 months ago by 40k • written 7.0 years ago by ★ 1.0k
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 6 months ago by 40k • written 4.7 years ago by 10k
170
votes
43
replies
17k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 months ago by 11k • written 10.5 years ago by 98k
57
votes
42
replies
5.8k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 20 months ago by 40k • written 9.0 years ago by 33k
138
votes
42
replies
21k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 6 months ago by 3.7k • written 10.3 years ago by ★ 1.6k
203
votes
41
replies
24k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 7 months ago by 40k • written 8.9 years ago by ★ 5.2k
31
votes
41
replies
2.0k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 3 months ago by 40k • written 3.6 years ago by ▴ 40
98
votes
41
replies
5.1k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 5 months ago by 40k • written 7.1 years ago by ▴ 510
67
votes
40
replies
8.7k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 19 months ago by 40k • written 8.9 years ago by ★ 2.9k
25
votes
39
replies
5.0k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 7 months ago by 40k • written 10.2 years ago by ▴ 440
69
votes
39
replies
3.8k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 4 months ago by 40k • written 6.3 years ago by 13k
151
votes
39
replies
23k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 7 months ago by 40k • written 10.7 years ago by 3.0k
36
votes
39
replies
3.2k
views
11 follow
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast RNA-Seq alignment next-gen-sequencing
updated 4 months ago by 40k • written 5.9 years ago by ▴ 130
129
votes
38
replies
6.7k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 3 months ago by 40k • written 4.5 years ago by 98k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 27 days ago by 21k • written 9.9 years ago by ★ 3.6k
48
votes
38
replies
16k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 5 months ago by 40k • written 7.5 years ago by 11k
47
votes
37
replies
7.9k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 7 months ago by 40k • written 10.1 years ago by 2.3k
43
votes
37
replies
1.9k
views
7 follow
Forum: Checking the quality and reliability in bioinformatics
reproducibility
updated 4 months ago by 40k • written 6.0 years ago by ★ 4.2k
84
votes
36
replies
18k
views
13 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS-mapper
updated 18 months ago by 40k • written 8.8 years ago by 10k
251
votes
36
replies
32k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 6 months ago by 40k • written 13.4 years ago by 157k
244
votes
36
replies
8.5k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 5 months ago by 40k • written 7.4 years ago by ★ 9.3k
49
votes
36
replies
7.8k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 7 months ago by 40k • written 9.4 years ago by ▴ 110
116
votes
35
replies
7.6k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 7 months ago by 40k • written 10.5 years ago by 21k
45
votes
35
replies
5.2k
views
12 follow
Forum: looking for a bioinformatics project to do during military rotation
military
updated 15 months ago by 40k • written 6.1 years ago by ▴ 60
121
votes
35
replies
40k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 4 months ago by 40k • written 6.3 years ago by ▴ 790
79
votes
35
replies
8.5k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 4 months ago by • 0 • written 7.9 years ago by ▴ 650
31
votes
34
replies
6.5k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 5 months ago by 40k • written 7.8 years ago by ★ 4.7k
80
votes
34
replies
4.4k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 8 months ago by 40k • written 8.3 years ago by ▴ 520
54
votes
34
replies
4.1k
views
13 follow
Forum: Should We Release Database Dumps Of All Questions On Biostar?
meta biostars
updated 7 months ago by 40k • written 12.8 years ago by 98k
36
votes
34
replies
2.2k
views
9 follow
Forum: New to bioinformatics.....
gene
updated 4 months ago by 40k • written 5.5 years ago by • 0
27
votes
33
replies
3.2k
views
7 follow
Forum: Biostars question catagories
statistics biostars meta
updated 5 months ago by 40k • written 6.9 years ago by 13k
120
votes
33
replies
37k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 months ago by ★ 2.3k • written 10.1 years ago by 11k
1,000 results • Page 1 of 20
Recent Votes
Comment: Spaceranger missing spatial coordinates [Discussion]
Answer: Low Alignment rate
Comment: Filtering VCF to divide with equal sizes
Answer: How to plot proportion of cells in each cluster with scanpy?
Comment: How the first sequencing product removed in pair end sequencing
Comment: WGCNA Labeled Heatmap
C: Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
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Popular Question to bharata1803 ▴ 550
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Recent Replies
Comment: Troubles launch IGV on Linux(Debian) by morovatunc ▴ 550
Disclaimer: My comment could be totally unrelated. I would give these a try if you have noone comment/answer your problem. I have had this…
Comment: How to check RNAseq support for annotated genes? by Michael 53k
> I tried it using STAR to map the transcript to the annotation gtf file That is not what STAR is for. STAR is for aligning short reads in…
Comment: Low Alignment rate by Mehwish • 0
Thanks alot! This worked out for me https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.toplevel.fa.gz …
Comment: Violin plot (Monocle 3) - Troubleshooting by Ram 40k
The error message tells me there is the possibility of a conflicting function called `plot_genes_violin` that accepts one parameter and err…
Comment: Violin plot (Monocle 3) - Troubleshooting by bk11 ★ 1.2k
I m not sure why you have problem there. I do not encounter any problem. May be your gene list are not present in your source object. Pleas…
Comment: Violin plot (Monocle 3) - Troubleshooting by Ram 40k
What is the output to: ```r help.search('plot_genes_violin', agrep=FALSE, ignore.case=FALSE, fields=c('name')) lsf.str() sessionInfo() ```
Comment: Violin plot (Monocle 3) - Troubleshooting by seattlescientist_01 • 0
I see the error message but I'm confused on what it's telling me.
Answer: Bacterial Pangenome Analysis by liorglic ★ 1.2k
I am not sure I understand why you think there is a problem with your analysis. It makes perfect sense that different blastp cutoffs produc…
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Thank you for replying again. The "type" still causes issues but the reply by Radu Tanasa worked.
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Thank you so much. That worked perfectly and it was much faster than what I was trying.
Answer: How to plot proportion of cells in each cluster with scanpy? by Radu Tanasa ▴ 60
Hi. If I get this right, you simply need to compute the percentage of cells in each cluster at the dataset level? ```py import pandas as p…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by ATpoint 76k
Why would that be an advantage?
Comment: How to plot proportion of cells in each cluster with scanpy? by bk11 ★ 1.2k
The following code will write percentage in your stacked barplot. cross_tab = pd.crosstab(adata.obs['leiden_0.6'],adata.obs['typ…
Comment: How to check RNAseq support for annotated genes? by BioinfoBee • 0
@juke34 Thanks for the suggestion. I wonder if bedtool coverage or intersect can be used to check the transcript support or coverage for ea…
Comment: How to plot proportion of cells in each cluster with scanpy? by bioinfo ▴ 110
Because that was the code from the link. It is how they specified they had 2 groups of samples but I don't have 2 groups. Sorry for the con…
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