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1.2k
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206
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108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 months ago by ★ 1.4k • written 13.1 years ago by 22k
61
votes
70
replies
13k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 14 months ago by 43k • written 10.0 years ago by 100k
279
votes
69
replies
21k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 14 months ago by 43k • written 12.7 years ago by ▴ 160
307
votes
65
replies
22k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
13.5 years ago by Giovanni M Dall'Olio 28k
134
votes
65
replies
6.0k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 10 months ago by 43k • written 4.4 years ago by ▴ 880
286
votes
64
replies
20k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 19 months ago by 87k • written 13.1 years ago by 22k
144
votes
62
replies
12k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 14 months ago by 43k • written 13.1 years ago by ★ 2.9k
206
votes
58
replies
41k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 14 months ago by 43k • written 10.9 years ago by 9.7k
364
votes
58
replies
69k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 months ago by 43k • written 14.1 years ago by 100k
65
votes
57
replies
8.2k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 20
145
votes
56
replies
8.9k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 14 months ago by 43k • written 11.1 years ago by 100k
290
votes
55
replies
16k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 14 months ago by 43k • written 11.0 years ago by 10k
113
votes
53
replies
7.0k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 10 months ago by 43k • written 5.0 years ago by ▴ 170
93
votes
50
replies
16k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 13 months ago by 43k • written 10.4 years ago by 100k
262
votes
48
replies
23k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 13 months ago by ★ 1.0k • written 8.9 years ago by ★ 4.2k
68
votes
48
replies
8.7k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 11 months ago by 43k • written 6.8 years ago by 100k
105
votes
46
replies
13k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 13 months ago by 43k • written 10.6 years ago by ★ 1.1k
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
125
votes
46
replies
50k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 12 months ago by 43k • written 8.1 years ago by ★ 3.2k
130
votes
44
replies
34k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 13 months ago by 43k • written 7.6 years ago by ★ 1.0k
57
votes
43
replies
16k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 13 months ago by 43k • written 5.2 years ago by 11k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 11 days ago by 22k • written 10.4 years ago by ★ 3.6k
57
votes
42
replies
6.6k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 2.2 years ago by 43k • written 9.5 years ago by 33k
138
votes
42
replies
22k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 12 months ago by 4.2k • written 10.9 years ago by ★ 1.6k
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 10 months ago by 43k • written 4.1 years ago by ▴ 40
203
votes
41
replies
25k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 14 months ago by 43k • written 9.4 years ago by ★ 5.3k
98
votes
41
replies
6.1k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 12 months ago by 43k • written 7.6 years ago by ▴ 510
67
votes
40
replies
9.6k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.9k
151
votes
39
replies
25k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 14 months ago by 43k • written 11.2 years ago by 3.0k
69
votes
39
replies
4.6k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 11 months ago by 43k • written 6.9 years ago by 13k
25
votes
39
replies
5.8k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 13 months ago by 43k • written 10.8 years ago by ▴ 440
36
votes
39
replies
4.1k
views
11 follow
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast RNA-Seq alignment next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ▴ 130
48
votes
38
replies
17k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 12 months ago by 43k • written 8.1 years ago by 11k
129
votes
38
replies
8.1k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 10 months ago by 43k • written 5.0 years ago by 100k
47
votes
37
replies
8.7k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 13 months ago by 43k • written 10.7 years ago by 2.3k
43
votes
37
replies
2.5k
views
7 follow
Forum: Checking the quality and reliability in bioinformatics
reproducibility
updated 11 months ago by 43k • written 6.5 years ago by ★ 4.3k
244
votes
36
replies
9.6k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 12 months ago by 43k • written 8.0 years ago by ★ 9.4k
251
votes
36
replies
33k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 13 months ago by 43k • written 14.0 years ago by 161k
84
votes
36
replies
19k
views
13 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS-mapper
updated 2.1 years ago by 43k • written 9.3 years ago by 11k
49
votes
36
replies
8.6k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 14 months ago by 43k • written 10.0 years ago by ▴ 110
116
votes
35
replies
8.2k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 14 months ago by 43k • written 11.0 years ago by 22k
79
votes
35
replies
9.6k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 10 months ago by • 0 • written 8.4 years ago by ▴ 650
121
votes
35
replies
43k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 11 months ago by 43k • written 6.8 years ago by ▴ 810
45
votes
35
replies
6.1k
views
12 follow
Forum: looking for a bioinformatics project to do during military rotation
military
updated 22 months ago by 43k • written 6.6 years ago by ▴ 60
54
votes
34
replies
4.9k
views
13 follow
Forum: Should We Release Database Dumps Of All Questions On Biostar?
meta biostars
updated 14 months ago by 43k • written 13.4 years ago by 100k
31
votes
34
replies
7.4k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 12 months ago by 43k • written 8.4 years ago by ★ 4.7k
80
votes
34
replies
5.2k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 15 months ago by 43k • written 8.9 years ago by ▴ 520
36
votes
34
replies
2.8k
views
9 follow
Forum: New to bioinformatics.....
gene
updated 11 months ago by 43k • written 6.1 years ago by • 0
121
votes
33
replies
39k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by ★ 2.5k • written 10.7 years ago by 11k
27
votes
33
replies
3.8k
views
7 follow
Forum: Biostars question catagories
statistics biostars meta
updated 12 months ago by 43k • written 7.5 years ago by 13k
1,000 results • Page 1 of 20
Recent Votes
bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Recent Replies
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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