updated 10 days ago by
Jeremy Leipzig
22k
•
written 10.4 years ago by
14134125465346445
★
3.6k
103
votes
42
replies
31k
views
34 follow
12
votes
14
replies
2.4k
views
8 follow
written 4.9 years ago by
Gabriel Wajnberg
▴
70
16
votes
10
replies
1.0k
views
6 follow
updated 21 days ago by
Madelaine Gogol
5.3k
•
written 22 days ago by
Ann
★
2.4k
12
votes
7
replies
6.9k
views
7
votes
7
replies
840
views
updated 3 days ago by
Dunois
★
2.5k
•
written 4 days ago by
AdviceSeeker
•
0
5
votes
2
replies
369
views
1
vote
2
replies
322
views
4
votes
2
replies
233
views
1
vote
1
reply
207
views
Recent Votes
Recent Locations •
All
United States, just now
United States, 2 minutes ago
United States, 2 minutes ago
Paris, 2 minutes ago
USA, 2 minutes ago
Russia, 3 minutes ago
United States, 4 minutes ago
Recent Awards •
All
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Scholar to
Pierre Lindenbaum
161k
Scholar to
Dinmukhamed
•
0
Popular Question to
i.sudbery
19k
Popular Question to
biwdpang
•
0
Recent Replies
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴
10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★
1.7k
https://help.galaxyproject.org/
Answer: RNA seq differential expression analysis
by
Mohamed Abderrahmane
▴
10
The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
Comment: Illumina reads preprocessing best practice for snp calling applications
by
Enrique
•
0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Comment: Could you please assist in identifying this cluster?
by
ATpoint
81k
The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
Comment: Free/open source 23andme-like analysis
by
joe
▴
510
Thank you, I added 'accurate' now ;)
I'm surprised to find out that there isn't some tool like multiqc that just summarizes all this infor…
Comment: Memory usage of picard Samsort
by
ATpoint
81k
Guys, just use `samtools sort` which won't get you into trouble with any of that.
Comment: Ciriquant not configuring hisat2 indexed files
by
Carlo Yague
8.6k
I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
Answer: Memory usage of picard Samsort
by
tamas.malkocs
•
0
For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
•
0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file
by
Maria
•
0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Comment: Free/open source 23andme-like analysis
by
Michael
54k
Noted that 'accurate' wasn't among your criteria ;)
Anyway, most variant callers are free open-source software. However, for ancestry ana…
Traffic: 2579 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6