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1,000 results • Page 2 of 20
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23
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6
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13k
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Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 9 months ago by 43k • written 11.5 years ago by ▴ 140
105
votes
46
replies
13k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 13 months ago by 43k • written 10.6 years ago by ★ 1.1k
6
votes
5
replies
12k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
60
votes
14
replies
12k
views
16 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 14 months ago by 43k • written 7.1 years ago by 47k
8
votes
2
replies
12k
views
Forum: List of popular bioinformatics software/tools
software
updated 13 months ago by 43k • written 9.5 years ago by ▴ 20
144
votes
62
replies
12k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 14 months ago by 43k • written 13.1 years ago by ★ 2.9k
32
votes
16
replies
12k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 22 months ago by 43k • written 9.1 years ago by ▴ 70
12
votes
8
replies
11k
views
8 follow
Forum: "Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 13 months ago by 43k • written 10.0 years ago by ★ 2.9k
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 6 months ago by ▴ 100 • written 8.0 years ago by 11k
8
votes
9
replies
11k
views
Forum: How to calculate FPKM values of interested gene
cufflinks FPKM bowtie2 RNA-Seq
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 130
15
votes
14
replies
11k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 13 months ago by 43k • written 10.2 years ago by ▴ 150
32
votes
13
replies
11k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 14 months ago by 43k • written 11.7 years ago by ▴ 650
34
votes
12
replies
11k
views
9 follow
Forum: Is going back to the wet lab worth it?
careerwet-lab
updated 12 months ago by 43k • written 7.3 years ago by ▴ 810
24
votes
15
replies
10k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 13 months ago by 43k • written 9.6 years ago by ▴ 70
38
votes
19
replies
10k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 12 months ago by 43k • written 8.0 years ago by ▴ 550
3
votes
2
replies
10k
views
Forum: How To Provide Reference Sequence Dictionary To Reordersam?
picard gatk
updated 13 months ago by 43k • written 10.4 years ago by 8.2k
10
votes
6
replies
10k
views
Forum: Is it worth getting a Masters in Bioinformatics, financially?
career
updated 13 months ago by 43k • written 9.9 years ago by ▴ 20
12
votes
6
replies
10k
views
Forum: Looking for opinions on PhD programs in Genetics and Genomics/Bioinformatics
PhD Genomics
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 110
30
votes
19
replies
10.0k
views
6 follow
Forum: Programming language use distribution from recent programs / articles
programming-language programs
updated 11 months ago by 43k • written 7.0 years ago by 11k
86
votes
29
replies
9.9k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU brexit EBI politics
updated 12 months ago by 43k • written 7.9 years ago by 54k
0
votes
2
replies
9.7k
views
Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 13 months ago by 43k • written 9.4 years ago by ★ 3.6k
67
votes
40
replies
9.6k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.9k
244
votes
36
replies
9.6k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 12 months ago by 43k • written 8.0 years ago by ★ 9.4k
79
votes
35
replies
9.6k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 10 months ago by • 0 • written 8.4 years ago by ▴ 650
11
votes
12
replies
9.5k
views
Forum: need ideas for bioinformatics research project (undergraduates)
alignment sequence
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 10
88
votes
32
replies
9.5k
views
11 follow
Forum: Vintage / unconventional pictures for Bioinformatics
history picture
updated 2.1 years ago by 43k • written 9.5 years ago by 161k
50
votes
8
replies
9.5k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 14 months ago by 43k • written 11.2 years ago by 16k
5
votes
4
replies
9.5k
views
Forum: List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology problems
updated 13 months ago by 43k • written 9.2 years ago by ★ 1.3k
13
votes
7
replies
9.3k
views
Forum: The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 11 months ago by 43k • written 6.8 years ago by 5.8k
4
votes
5
replies
9.3k
views
Forum: Computer Science's Perspective Comparison : BLAST vs. Clustal Omega ?!
clustal-omega blast
updated 23 months ago by 43k • written 9.1 years ago by ▴ 270
50
votes
4
replies
9.3k
views
Forum: How to add images to a Biostars post
how-to
14 months ago by Ram 43k
11
votes
10
replies
9.3k
views
Forum: Looking For Bioinformatics Job In Germany
bioinformatician career
updated 13 months ago by 43k • written 10.0 years ago by ▴ 520
34
votes
11
replies
9.3k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 20 months ago by 43k • written 8.5 years ago by ★ 9.4k
29
votes
10
replies
9.2k
views
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf tidy-data
updated 2.1 years ago by 43k • written 9.4 years ago by 28k
27
votes
21
replies
9.2k
views
9 follow
Forum: Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science phd
updated 12 months ago by 43k • written 7.6 years ago by ★ 1.7k
21
votes
17
replies
9.1k
views
7 follow
Forum: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in 21st century?
next-gen
updated 12 months ago by 43k • written 7.3 years ago by ▴ 10
51
votes
24
replies
9.1k
views
7 follow
Forum: Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 5.3k
22
votes
14
replies
9.1k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 13 months ago by 43k • written 9.9 years ago by ▴ 30
99
votes
21
replies
8.9k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 14 months ago by 43k • written 11.2 years ago by ▴ 370
145
votes
56
replies
8.9k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 14 months ago by 43k • written 11.1 years ago by 100k
22
votes
15
replies
8.8k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 80
9
votes
4
replies
8.7k
views
Forum: Biofinysics - How does bowtie2 assign MAPQ scores?
alignment bowtie2
updated 13 months ago by 43k • written 9.6 years ago by 8.3k
68
votes
48
replies
8.7k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 11 months ago by 43k • written 6.8 years ago by 100k
12
votes
4
replies
8.7k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 14 months ago by 43k • written 12.0 years ago by ▴ 120
47
votes
37
replies
8.7k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 13 months ago by 43k • written 10.7 years ago by 2.3k
9
votes
19
replies
8.6k
views
Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 13 months ago by 43k • written 10.4 years ago by ▴ 660
49
votes
36
replies
8.6k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 14 months ago by 43k • written 10.0 years ago by ▴ 110
46
votes
9
replies
8.5k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 13 months ago by 43k • written 10.3 years ago by ▴ 140
10
votes
3
replies
8.5k
views
Forum: Got Multiple Cpus? Activate Them With Gnu Parallel
parallel command-line ngs
updated 13 months ago by 43k • written 10.4 years ago by ★ 4.4k
13
votes
5
replies
8.4k
views
Forum: Funding Opportunities In Bioinformatics
grant
updated 14 months ago by 43k • written 11.2 years ago by 20k
1,000 results • Page 2 of 20
Recent Votes
bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Scholar to Ann ★ 2.4k
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Recent Replies
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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