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48
votes
5
answers
35k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 7.5 years ago by biorepine1.5k • updated 5.1 years ago by Malachi Griffith18k
21
votes
5
answers
5.9k
views
23 follow
5
answers
To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm rna-seq written 6.3 years ago by liupfskygre190 • updated 5.4 years ago by cankutcubuk170
32
votes
5
answers
35k
views
18 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 5.5 years ago by NHEJ320 • updated 4.2 years ago by Daniel3.8k
6
votes
4
answers
4.5k
views
7 follow
4
answers
Very Large Fpkm Values For Some Transcripts: Artifacts?
fpkm rna written 8.5 years ago by Pfs510 • updated 6.6 years ago by Biostar ♦♦ 20
9
votes
4
answers
7.3k
views
8 follow
4
answers
Fpkm Comparison Using T-Test Or Mann-Whitney U Test
fpkm expression written 7.2 years ago by Vikas Bansal2.4k • updated 7.0 years ago by earonesty230
2
votes
3
answers
7.0k
views
3
answers
Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 7.4 years ago by Ge80 • updated 4.6 years ago by SmallChess510
46
votes
3
answers
92k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.3 years ago by biorepine1.5k • updated 7 months ago by Renesh1.9k
15
votes
3
answers
3.9k
views
3
answers
64
votes
3
answers
19k
views
58 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 6.7 years ago by Irsan7.2k • updated 2.4 years ago by lhdcsu30
7
votes
3
answers
8.3k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 6.0 years ago by Ginsea Chen130 • updated 6.0 years ago by Charles Warden7.8k
8
votes
3
answers
4.9k
views
10 follow
3
answers
normalization RNA-seq data between different types of libraries
rpkm fpkm rna-seq written 6.0 years ago by ktian.whu50 • updated 6.0 years ago by Floris Brenk940
7
votes
3
answers
3.2k
views
3
answers
Integrating HTSeq count data of different samples
htseq rnaseq fpkm tool written 5.3 years ago by kozhaki.seq50 • updated 5.3 years ago by kangyueapril80
16
votes
3
answers
5.9k
views
3
answers
PCA tpm fpkm
pca fpkm tpm written 3.8 years ago by riccardo80 • updated 3.8 years ago by Ar980
7
votes
3
answers
2.7k
views
6 follow
3
answers
Converting TPM to FPKM
fpkm tpm rna-seq written 3.2 years ago by alexahes10 • updated 17 months ago by Charles Warden7.8k
7
votes
3
answers
2.7k
views
3
answers
FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 2.7 years ago by Silvia10 • updated 17 months ago by Charles Warden7.8k
2
votes
3
answers
3.4k
views
5 follow
3
answers
How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 21 months ago by Biologist190 • updated 15 months ago by Ahmed Alhendi50
6
votes
3
answers
311
views
3
answers
28
votes
2
answers
101k
views
20 follow
2
answers
6
votes
2
answers
6.3k
views
5 follow
2
answers
Rpkm Or Fpkm For Paired End Data Analyses Of Gene Expression?
rpkm paired fpkm written 9.0 years ago by Nebo80 • updated 6.4 years ago by Adrian Pelin2.4k
14
votes
2
answers
7.1k
views
8 follow
2
answers
Determining Fpkm Of De Novo Assembly Of Transcriptome
assembly fpkm cufflinks rna gff written 8.9 years ago by James Smith150 • updated 8.9 years ago by Michael Dondrup47k
2
votes
2
answers
4.0k
views
2
answers
Cufflinks - Assigning Transcripts Or Exons
fpkm cufflinks rna-seq written 7.9 years ago by AW350 • updated 3.0 years ago by Biostar ♦♦ 20
1
vote
2
answers
2.5k
views
2
answers
2
votes
2
answers
8.2k
views
5 follow
2
answers
Rnaseq Fpkm Quantile Normalization
rnaseq normalization fpkm written 7.0 years ago by J.F.Jiang820 • updated 7.0 years ago by Damian Kao15k
11
votes
2
answers
3.0k
views
6 follow
2
answers
Problem With Fpkm In Cufflinks
rpkm fpkm differential-expression cufflinks transcriptome written 6.9 years ago by Bio_ysl20 • updated 6.9 years ago by Chris Cabanski330
11
votes
2
answers
15k
views
8 follow
2
answers
Normalizing Rna-Seq Data Using Ercc Spike-In
normalization fpkm rna-seq written 6.8 years ago by Eric Fournier1.4k • updated 6.8 years ago by Devon Ryan95k
14
votes
2
answers
3.6k
views
11 follow
2
answers
13
votes
2
answers
4.0k
views
2
answers
How is FPKM variability handled?
fpkm rna-seq written 5.7 years ago by NHEJ320 • updated 5.7 years ago by Devon Ryan95k
0
votes
2
answers
2.0k
views
2
answers
Correlating Protein expression with gene Expression
fpkm next-gen rna-seq gsea gene-expression written 5.5 years ago by Ron990 • updated 5.5 years ago by andrew490
15
votes
2
answers
14k
views
8 follow
2
answers
Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 4.8 years ago by Alex Reynolds30k • updated 2.8 years ago by fabio-verdao20
2
votes
2
answers
2.3k
views
2
answers
Deferentially expressed genes from FPKM values?
fpkm differentially expressed genes rna-seq written 4.6 years ago by kandoigaurav150 • updated 4.5 years ago by khaynes40
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