Showing: fpkmreset
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47
votes
5
answers
33k
views
28 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 6.6 years ago by biorepine1.4k • updated 4.2 years ago by Malachi Griffith17k
21
votes
5
answers
5.4k
views
23 follow
5
answers
To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm rna-seq written 5.5 years ago by liupfskygre190 • updated 4.5 years ago by cankutcubuk170
30
votes
5
answers
33k
views
17 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 4.7 years ago by NHEJ320 • updated 3.3 years ago by Daniel3.7k
6
votes
4
answers
4.2k
views
7 follow
4
answers
Very Large Fpkm Values For Some Transcripts: Artifacts?
fpkm rna written 7.6 years ago by Pfs490 • updated 5.7 years ago by Biostar ♦♦ 20
9
votes
4
answers
6.8k
views
8 follow
4
answers
Fpkm Comparison Using T-Test Or Mann-Whitney U Test
fpkm expression written 6.3 years ago by Vikas Bansal2.3k • updated 6.1 years ago by earonesty220
15
votes
4
answers
3.6k
views
4
answers
11
votes
4
answers
4.6k
views
4
answers
PCA tpm fpkm
pca fpkm tpm written 3.0 years ago by riccardo70 • updated 3.0 years ago by Ar890
2
votes
3
answers
6.6k
views
3
answers
Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 6.5 years ago by Ge80 • updated 3.8 years ago by SmallChess490
55
votes
3
answers
17k
views
52 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 5.8 years ago by Irsan6.9k • updated 18 months ago by lhdcsu20
7
votes
3
answers
7.8k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 5.1 years ago by Ginsea Chen120 • updated 5.1 years ago by Charles Warden7.2k
6
votes
3
answers
4.5k
views
8 follow
3
answers
normalization RNA-seq data between different types of libraries
rpkm fpkm rna-seq written 5.1 years ago by ktian.whu30 • updated 5.1 years ago by Floris Brenk890
7
votes
3
answers
2.8k
views
3
answers
Integrating HTSeq count data of different samples
htseq rnaseq fpkm tool written 4.4 years ago by kozhaki.seq50 • updated 4.4 years ago by kangyueapril80
1
vote
3
answers
3.7k
views
3
answers
7
votes
3
answers
1.7k
views
5 follow
3
answers
Converting TPM to FPKM
fpkm tpm rna-seq written 2.3 years ago by alexahes10 • updated 6 months ago by Charles Warden7.2k
7
votes
3
answers
1.9k
views
3
answers
FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 22 months ago by Silvia10 • updated 6 months ago by Charles Warden7.2k
2
votes
3
answers
1.4k
views
5 follow
3
answers
How to convert featureCounts to FPKM?
R fpkm featurecounts rna-seq written 10 months ago by Biologist150 • updated 4 months ago by Ahmed Alhendi30
28
votes
2
answers
98k
views
20 follow
2
answers
6
votes
2
answers
5.8k
views
5 follow
2
answers
Rpkm Or Fpkm For Paired End Data Analyses Of Gene Expression?
rpkm paired fpkm written 8.1 years ago by Nebo80 • updated 5.5 years ago by Adrian Pelin2.3k
14
votes
2
answers
6.8k
views
8 follow
2
answers
Determining Fpkm Of De Novo Assembly Of Transcriptome
assembly fpkm cufflinks rna gff written 8.0 years ago by James Smith150 • updated 8.0 years ago by Michael Dondrup46k
2
votes
2
answers
3.7k
views
2
answers
Cufflinks - Assigning Transcripts Or Exons
fpkm cufflinks rna-seq written 7.0 years ago by AW350 • updated 2.1 years ago by Biostar ♦♦ 20
40
votes
2
answers
81k
views
25 follow
2
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.4 years ago by biorepine1.4k • updated 23 months ago by Renesh1.6k
1
vote
2
answers
2.3k
views
2
answers
2
votes
2
answers
7.7k
views
5 follow
2
answers
Rnaseq Fpkm Quantile Normalization
rnaseq normalization fpkm written 6.2 years ago by J.F.Jiang750 • updated 6.2 years ago by Damian Kao15k
11
votes
2
answers
2.8k
views
6 follow
2
answers
Problem With Fpkm In Cufflinks
rpkm fpkm differential-expression cufflinks transcriptome written 6.0 years ago by Bio_ysl20 • updated 6.0 years ago by Chris Cabanski330
11
votes
2
answers
14k
views
8 follow
2
answers
Normalizing Rna-Seq Data Using Ercc Spike-In
normalization fpkm rna-seq written 5.9 years ago by Eric Fournier1.4k • updated 5.9 years ago by Devon Ryan91k
14
votes
2
answers
3.2k
views
11 follow
2
answers
13
votes
2
answers
3.7k
views
2
answers
How is FPKM variability handled?
fpkm rna-seq written 4.8 years ago by NHEJ320 • updated 4.8 years ago by Devon Ryan91k
0
votes
2
answers
1.8k
views
2
answers
Correlating Protein expression with gene Expression
fpkm next-gen rna-seq gsea gene-expression written 4.6 years ago by Ron970 • updated 4.6 years ago by andrew460
11
votes
2
answers
11k
views
5 follow
2
answers
Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 3.9 years ago by Alex Reynolds28k • updated 23 months ago by fabio-verdao0
2
votes
2
answers
2.0k
views
2
answers
Deferentially expressed genes from FPKM values?
fpkm differentially expressed genes rna-seq written 3.7 years ago by kandoigaurav120 • updated 3.6 years ago by khaynes40
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