Showing: fpkmreset
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55
votes
3
answers
17k
views
52 follow
3
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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 5.8 years ago by Irsan6.9k • updated 18 months ago by lhdcsu20
47
votes
5
answers
33k
views
28 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 6.6 years ago by biorepine1.4k • updated 4.2 years ago by Malachi Griffith17k
40
votes
2
answers
80k
views
25 follow
2
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 6.4 years ago by biorepine1.4k • updated 23 months ago by Renesh1.6k
30
votes
5
answers
33k
views
17 follow
5
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FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 4.6 years ago by NHEJ320 • updated 3.3 years ago by Daniel3.7k
28
votes
2
answers
98k
views
20 follow
2
answers
21
votes
5
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5.4k
views
23 follow
5
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To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm rna-seq written 5.5 years ago by liupfskygre190 • updated 4.5 years ago by cankutcubuk170
14
votes
2
answers
6.8k
views
8 follow
2
answers
Determining Fpkm Of De Novo Assembly Of Transcriptome
assembly fpkm cufflinks rna gff written 8.0 years ago by James Smith150 • updated 8.0 years ago by Michael Dondrup46k
10
votes
1
answer
5.7k
views
6 follow
1
answer
Rnaseq Processed Data To Genes Up/Down
fpkm written 6.6 years ago by daniel.soronellas330 • updated 6.6 years ago by biorepine1.4k
9
votes
4
answers
6.8k
views
8 follow
4
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Fpkm Comparison Using T-Test Or Mann-Whitney U Test
fpkm expression written 6.3 years ago by Vikas Bansal2.3k • updated 6.1 years ago by earonesty220
14
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2
answers
3.2k
views
11 follow
2
answers
13
votes
1
answer
3.4k
views
8 follow
1
answer
FPKM not suitable for DE?
normalization fpkm rna-seq written 5.2 years ago by nevev90 • updated 3.1 years ago by Biostar ♦♦ 20
7
votes
3
answers
7.8k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 5.1 years ago by Ginsea Chen120 • updated 5.1 years ago by Charles Warden7.2k
6
votes
3
answers
4.5k
views
8 follow
3
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normalization RNA-seq data between different types of libraries
rpkm fpkm rna-seq written 5.1 years ago by ktian.whu30 • updated 5.1 years ago by Floris Brenk890
11
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2
answers
11k
views
5 follow
2
answers
Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 3.9 years ago by Alex Reynolds28k • updated 23 months ago by fabio-verdao0
10
votes
0
answers
6.7k
views
5 follow
0
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Cufflinks : Analysis Comparison With And Without A Gtf Reference File
fpkm cufflinks rna written 8.2 years ago by Hélène90 • updated 20 months ago by Biostar ♦♦ 20
6
votes
2
answers
5.8k
views
5 follow
2
answers
Rpkm Or Fpkm For Paired End Data Analyses Of Gene Expression?
rpkm paired fpkm written 8.1 years ago by Nebo80 • updated 5.5 years ago by Adrian Pelin2.3k
5
votes
1
answer
1.7k
views
1
answer
Rna-Seq Expression For 3' Transcripts
fpkm rna written 7.7 years ago by Sander Timmer700 • updated 7.7 years ago by Damian Kao15k
16
votes
1
answer
5.5k
views
6 follow
1
answer
3
votes
0
answers
4.5k
views
0
answers
11
votes
2
answers
2.8k
views
6 follow
2
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Problem With Fpkm In Cufflinks
rpkm fpkm differential-expression cufflinks transcriptome written 6.0 years ago by Bio_ysl20 • updated 6.0 years ago by Chris Cabanski330
11
votes
2
answers
14k
views
8 follow
2
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Normalizing Rna-Seq Data Using Ercc Spike-In
normalization fpkm rna-seq written 5.9 years ago by Eric Fournier1.4k • updated 5.9 years ago by Devon Ryan91k
4
votes
1
answer
9.0k
views
5 follow
1
answer
3
votes
1
answer
1.5k
views
1
answer
How to extract meaningful information from FPKM of a subset of genes
phylogeny fpkm rna-seq written 4.5 years ago by RT340 • updated 4.5 years ago by Sean Davis25k
4
votes
2
answers
2.9k
views
2
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1
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2
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1.1k
views
2
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Accessing Expression Levels for Genes of Interest from GEO Experiments
geo fpkm rna rna-seq lncrna written 3.5 years ago by a.aiezza30 • updated 22 months ago by Biostar ♦♦ 20
5
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2
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1.0k
views
2
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FPKM cutoff based on data from one treatment?
fpkm rna-seq written 3.3 years ago by miumiul3310 • updated 3.3 years ago by ivivek_ngs4.8k
11
votes
4
answers
4.5k
views
4
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PCA tpm fpkm
pca fpkm tpm written 3.0 years ago by riccardo70 • updated 3.0 years ago by Ar890
9
votes
2
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8.0k
views
11 follow
2
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Calculating FPKM after htseq-count
htseq fpkm rna-seq written 2.5 years ago by Fill70 • updated 4 months ago by Ahmed Alhendi10
9
votes
1
answer
1.4k
views
10 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 2.2 years ago by jamieson.pierce30 • updated 2.2 years ago by Brian Bushnell16k
3
votes
1
answer
3.6k
views
5 follow
1
answer
Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 22 months ago by sd.gamboa.t30 • updated 22 months ago by Corentin380
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