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65
votes
3
answers
19k
views
58 follow
3
answers
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
bioconductor fpkm forum rna-seq tutorial written 6.7 years ago by Irsan7.2k • updated 2.5 years ago by lhdcsu30
46
votes
3
answers
92k
views
30 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 7.3 years ago by biorepine1.5k • updated 7 months ago by Renesh1.9k
28
votes
2
answers
101k
views
20 follow
2
answers
48
votes
5
answers
35k
views
30 follow
5
answers
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm fpkm cutoff rna-seq written 7.5 years ago by biorepine1.5k • updated 5.1 years ago by Malachi Griffith18k
32
votes
5
answers
35k
views
18 follow
5
answers
FPKM vs raw counts vs RPKM
rpkm fpkm rna-seq raw counts written 5.6 years ago by NHEJ320 • updated 4.2 years ago by Daniel3.8k
14
votes
2
answers
7.1k
views
8 follow
2
answers
Determining Fpkm Of De Novo Assembly Of Transcriptome
assembly fpkm cufflinks rna gff written 8.9 years ago by James Smith150 • updated 8.9 years ago by Michael Dondrup47k
21
votes
5
answers
5.9k
views
23 follow
5
answers
To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm rna-seq written 6.4 years ago by liupfskygre190 • updated 5.4 years ago by cankutcubuk170
6
votes
4
answers
4.5k
views
7 follow
4
answers
Very Large Fpkm Values For Some Transcripts: Artifacts?
fpkm rna written 8.5 years ago by Pfs510 • updated 6.6 years ago by Biostar ♦♦ 20
11
votes
2
answers
15k
views
8 follow
2
answers
Normalizing Rna-Seq Data Using Ercc Spike-In
normalization fpkm rna-seq written 6.8 years ago by Eric Fournier1.4k • updated 6.8 years ago by Devon Ryan96k
13
votes
1
answer
3.9k
views
8 follow
1
answer
FPKM not suitable for DE?
normalization fpkm rna-seq written 6.1 years ago by nevev100 • updated 4.0 years ago by Biostar ♦♦ 20
8
votes
3
answers
4.9k
views
10 follow
3
answers
normalization RNA-seq data between different types of libraries
rpkm fpkm rna-seq written 6.0 years ago by ktian.whu50 • updated 6.0 years ago by Floris Brenk940
16
votes
1
answer
6.0k
views
6 follow
1
answer
15
votes
2
answers
14k
views
8 follow
2
answers
Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 4.8 years ago by Alex Reynolds30k • updated 2.9 years ago by fabio-verdao20
16
votes
3
answers
5.9k
views
3
answers
PCA tpm fpkm
pca fpkm tpm written 3.9 years ago by riccardo80 • updated 3.9 years ago by Ar980
3
votes
0
answers
4.8k
views
0
answers
14
votes
2
answers
3.6k
views
11 follow
2
answers
7
votes
3
answers
8.3k
views
7 follow
3
answers
Forum: How to calculate FPKM values of interested gene
bowtie2 fpkm cufflinks forum rna-seq written 6.0 years ago by Ginsea Chen130 • updated 6.0 years ago by Charles Warden7.8k
5
votes
2
answers
2.3k
views
2
answers
Filtering by FPKM, opinions and thoughts
fpkm filtering written 4.3 years ago by Biogeek400 • updated 4.3 years ago by Carlo Yague5.0k
4
votes
1
answer
622
views
6 follow
1
answer
2
votes
2
answers
4.0k
views
2
answers
Cufflinks - Assigning Transcripts Or Exons
fpkm cufflinks rna-seq written 7.9 years ago by AW350 • updated 3.0 years ago by Biostar ♦♦ 20
5
votes
1
answer
5.4k
views
1
answer
2
votes
3
answers
7.0k
views
3
answers
Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 7.4 years ago by Ge80 • updated 4.7 years ago by SmallChess510
8
votes
1
answer
4.1k
views
5 follow
1
answer
Can We Use Rnaseq Fpkm Values Derived From 18 Cellines And Run Gsea Analysis On It?
rnaseq fpkm written 7.1 years ago by Hmm500 • updated 7.1 years ago by Damian Kao15k
11
votes
2
answers
3.0k
views
6 follow
2
answers
Problem With Fpkm In Cufflinks
rpkm fpkm differential-expression cufflinks transcriptome written 6.9 years ago by Bio_ysl20 • updated 6.9 years ago by Chris Cabanski330
4
votes
1
answer
9.6k
views
5 follow
1
answer
6
votes
1
answer
4.8k
views
1
answer
4
votes
2
answers
3.6k
views
2
answers
9
votes
1
answer
1.8k
views
10 follow
1
answer
Bowtie2/HISAT using single-end to generate FPKM???
bowtie2 fpkm hisat rna-seq rpkm written 3.1 years ago by jamieson.pierce30 • updated 3.1 years ago by Brian Bushnell17k
3
votes
1
answer
4.8k
views
5 follow
1
answer
Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 2.8 years ago by sd.gamboa.t50 • updated 2.8 years ago by Corentin450
2
votes
1
answer
2.0k
views
1
answer
Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 2.5 years ago by galozs20 • updated 2.5 years ago by Macspider3.0k
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