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<prev • 77 results • page 1 of 3 • next >
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Filter a VCF file using Galaxy
vcf galaxy freebayes written 9 weeks ago by ani.d.khachatryan • 0 • updated 12 days ago by Biostar ♦♦ 20
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70
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Clustering of SNPs toward same QUAL values
quality freebayes snp variants written 14 days ago by Begonia_pavonina • 20 • updated 14 days ago by Biostar ♦♦ 20
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How to compare VCF files called from different reference genomes?
vcf picard alignment freebayes snp written 21 days ago by Begonia_pavonina • 20
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75
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Genotype call incorrect in freebayes output?
vcf freebayes genotype written 29 days ago by najoshi • 30 • updated 29 days ago by genomax ♦ 87k
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How to extract uniquely aligned paired end reads obtained from freebayes using diffrent parmeter combinations of samtools?
ngs read filtering samtools freebayes written 4 weeks ago by nadiabeg.comsats • 0
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Freebayes adjusting parameters to "force" homozygous call
variant calling freebayes written 5 months ago by User000 • 380 • updated 12 weeks ago by Biostar ♦♦ 20
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Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 3 months ago by User000 • 380 • updated 3 months ago by gabri.mochales • 30
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 4.4 years ago by mark.rose • 40 • updated 3 months ago by mikemc • 10
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freebayes for snp call in pooled samples: how do I set the parameters?
pooled ploidy freebayes snp written 4 months ago by cristiana.ij.marques • 0
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Filter out supplementary aligned reads for variant calling or not
freebayes bwa snp written 4 months ago by gb • 1.9k
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181
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Freebayes variant calling understanding
freebayes snp written 5 months ago by User000 • 380
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115
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How to determine which bam/sam lines correspond to called structural variant using Freebayes
variant calling freebayes snp written 5 months ago by mdriskil • 10
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298
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Problem succesfully running freebayes
vcf fasta freebayes written 6 months ago by ja4123 • 0
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232
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File not suitable for fasta index generation.
fasta freebayes index written 6 months ago by ja4123 • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 129k
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Unable to find FASTA index entry for '1'
fasta vcf bam freebayes written 7 months ago by ja4123 • 0
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How to filter SNP and Indel under these criteria?
indel vcffilter freebayes vcftools snp written 8 months ago by r00628112 • 10 • updated 7 months ago by devarora • 160
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Segmentation fault Freebayes
freebayes snp error segmentation written 8 months ago by luzglongoria • 40
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165
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Variant using freebayes
tetraploid genome freebayes 10x genomics written 8 months ago by nadiabeg.comsats • 0 • updated 8 months ago by colindaven • 2.3k
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252
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How to subset bamfile based on chromosome IDs
bam freebayes subset written 10 months ago by mernster • 0 • updated 10 months ago by ATpoint ♦ 36k
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1
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349
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Freebayes haplotype calling
variantcall haplotype freebayes snp written 12 months ago by k.itokawa • 0 • updated 12 months ago by colindaven • 2.3k
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395
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Filter out low coverage and minor alleles of a frequency above 40%.
vcf variant calling freebayes hiv written 13 months ago by pennakiza • 50 • updated 13 months ago by bari.ballew • 220
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Test Freebayes on sample files
variant calling freebayes sequencing written 14 months ago by Bella_p • 50
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355
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Variant discrepancy between technical replicates
alignment freebayes written 15 months ago by kspata • 70 • updated 15 months ago by geek_y ♦ 11k
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how to run freebayes in multi-thread
vcf multi-thread freebayes written 17 months ago by marongiu.luigi • 520 • updated 17 months ago by RamRS ♦ 28k
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Consensus VCF file from several variant callers
vcf variant calling freebayes gatk written 20 months ago by ajuiwl • 30 • updated 20 months ago by Pierre Lindenbaum ♦ 129k
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Using freebayes to call variants
next-gen freebayes sequencing written 20 months ago by zhou_1228 • 0 • updated 20 months ago by finswimmer ♦ 13k
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Freebayes outputs only one individual out of many
freebayes written 21 months ago by Fedster • 30
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SNP calling from pool sequencing with freebayes
ngs freebayes snp written 5.1 years ago by marcoabbestia • 0 • updated 22 months ago by Biostar ♦♦ 20
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freebayes: changing min-coverage setting and still getting same size file output
freebayes min-coverage written 4.5 years ago by laurenvw • 20 • updated 23 months ago by RamRS ♦ 28k
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How to know if a variant is sequencing or mapping artifact?
vcf variant freebayes written 2.1 years ago by kspata • 70 • updated 2.1 years ago by finswimmer ♦ 13k
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