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<prev • 82 results • page 1 of 3 • next >
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Issue customizing Freebayes variant calling using -@ flag
next-gen freebayes variant caller snp written 3 days ago by lexic2713 • 10
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83
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freebayes running error on public data
variant calling alignment freebayes bam file written 25 days ago by anithanagaraj93 • 0
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188
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Freebayes 'bamleftalign' function usage issues (Part of the 'Du Novo' Sequencing pipeline)
du novo alignment freebayes written 4 weeks ago by jmath97 • 0
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271
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Freebayes variant calling understanding
freebayes snp written 8 months ago by User000 • 410 • updated 5 weeks ago by Biostar ♦♦ 20
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VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv written 8 weeks ago by mark.rose • 40
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Converting MNP to SNP
vcf freebayes snp written 3.1 years ago by finswimmer ♦ 14k • updated 8 weeks ago by cicindel • 20
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214
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FreeBayes :the tag "DP4" is not defined in the VCF header
freebayes written 3 months ago by sami • 20
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213
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Genotype call incorrect in freebayes output?
vcf freebayes genotype written 4 months ago by najoshi • 30 • updated 3 months ago by mutasim806 • 0
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322
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Filter a VCF file using Galaxy
vcf galaxy freebayes written 5 months ago by ani.d.khachatryan • 0 • updated 4 months ago by Biostar ♦♦ 20
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Clustering of SNPs toward same QUAL values
quality freebayes snp variants written 4 months ago by Begonia_pavonina • 20 • updated 4 months ago by Biostar ♦♦ 20
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How to compare VCF files called from different reference genomes?
vcf picard alignment freebayes snp written 4 months ago by Begonia_pavonina • 20
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How to extract uniquely aligned paired end reads obtained from freebayes using diffrent parmeter combinations of samtools?
ngs read filtering samtools freebayes written 4 months ago by nadiabeg.comsats • 0
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Freebayes adjusting parameters to "force" homozygous call
variant calling freebayes written 8 months ago by User000 • 410 • updated 6 months ago by Biostar ♦♦ 20
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509
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Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 7 months ago by User000 • 410 • updated 6 months ago by gabri.mochales • 40
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 4.7 years ago by mark.rose • 40 • updated 7 months ago by mikemc • 10
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223
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freebayes for snp call in pooled samples: how do I set the parameters?
pooled ploidy freebayes snp written 7 months ago by cristiana.ij.marques • 0
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209
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Filter out supplementary aligned reads for variant calling or not
freebayes bwa snp written 7 months ago by gb • 1.9k
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How to determine which bam/sam lines correspond to called structural variant using Freebayes
variant calling freebayes snp written 9 months ago by mdriskil • 10
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1
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383
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1
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Problem succesfully running freebayes
vcf fasta freebayes written 10 months ago by ja4123 • 0
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1
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420
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File not suitable for fasta index generation.
fasta freebayes index written 10 months ago by ja4123 • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 131k
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510
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Unable to find FASTA index entry for '1'
fasta vcf bam freebayes written 11 months ago by ja4123 • 0
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How to filter SNP and Indel under these criteria?
indel vcffilter freebayes vcftools snp written 12 months ago by r00628112 • 10 • updated 10 months ago by devarora • 240
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359
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Segmentation fault Freebayes
freebayes snp error segmentation written 12 months ago by luzglongoria • 40
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210
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Variant using freebayes
tetraploid genome freebayes 10x genomics written 12 months ago by nadiabeg.comsats • 0 • updated 12 months ago by colindaven • 2.5k
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1
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314
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1
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How to subset bamfile based on chromosome IDs
bam freebayes subset written 13 months ago by mernster • 0 • updated 13 months ago by ATpoint ♦ 41k
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400
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Freebayes haplotype calling
variantcall haplotype freebayes snp written 16 months ago by k.itokawa • 0 • updated 16 months ago by colindaven • 2.5k
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487
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Filter out low coverage and minor alleles of a frequency above 40%.
vcf variant calling freebayes hiv written 17 months ago by pennakiza • 60 • updated 16 months ago by bari.ballew • 250
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357
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Test Freebayes on sample files
variant calling freebayes sequencing written 18 months ago by Bella_p • 50
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398
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Variant discrepancy between technical replicates
alignment freebayes written 18 months ago by kspata • 70 • updated 18 months ago by geek_y ♦ 11k
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how to run freebayes in multi-thread
vcf multi-thread freebayes written 21 months ago by marongiu.luigi • 520 • updated 21 months ago by RamRS ♦ 30k
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