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Recent Votes
- A: Representing A Feature Along The Length Of The Chromosome
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Recent Replies
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C: Identification of short insertions in genome by
valerie • 30
Great! Thank you, Tim!
-
C: Identification of short insertions in genome by
timstuart • 30
I think delly and lumpy should both be able to detect indels 200-300 bp without much trouble
-
C: Extract vcf from 1000 genomes based on population and region by
gongrui0918 • 0
following your suggestions ,use "vcf-subset -e -c ceu_sample.txt ALL.chr7.phase3_shapeit2_mvncall...
-
C: long run time problem by
Pierre Lindenbaum ♦ 95k
not float addition (vector v) but float addition (vector& v)
-
A: Representing A Feature Along The Length Of The Chromosome by
bernatgel • 530
Answering after a few years, in case anyone comes to this question from google et al. You can us...
-
C: Extract parts of reads from BAM file that overlap a specific region of genome by
Pierre Lindenbaum ♦ 95k
see this post: https://www.biostars.org/p/147136/
-
C: refseq/description/comments summary field download by
Pierre Lindenbaum ♦ 95k
sure: wget -O - "ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/refseqgene.1.genomic.gb...
-
C: Extract parts of reads from BAM file that overlap a specific region of genome by
Chadi Saad • 10
thanks , worked perfectly. But it outputs all the reads sequence, while i want just the part of r...
-
C: Identification of short insertions in genome by
valerie • 30
Thank you! Actually they are almost the size of a read (~230 nucl), is it a small indel?
-
A: Identification of short insertions in genome by
timstuart • 30
I'd recommend using lumpy or delly2 for small indels, rather than trying reinvent your own method...
-
C: refseq/description/comments summary field download by
theoharis • 0
is there a script you can suggest?
-
C: How to plot coverage and depth statistics of a bam file by
vchris_ngs • 3.5k
You have a very clear answer from Vivek. Now you want do for all bans write a script then. It wil...
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