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<prev • 86 results • page 1 of 3 • next >
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Freebayes - not detecting some ALT alleles
vcf freebayes variantcalling written 12 weeks ago by z.klinovska • 0 • updated 11 weeks ago by finswimmer ♦ 14k
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VCF parse error: Could not add dummy header for contig
vcf freebayes written 12 weeks ago by User000 • 440
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153
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FreeBayes error when limit variant calling to a SNP region
rnaseq freebayes varinat calling snp usegalaxy written 3 months ago by Kian • 40 • updated 3 months ago by Ram ♦ 32k
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128
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Freebayes best practice
genome wes freebayes variant detection written 3 months ago by luca t • 0 • updated 3 months ago by ATpoint ♦ 46k
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194
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Issue customizing Freebayes variant calling using -@ flag
next-gen freebayes variant caller snp written 3 months ago by acoles • 10
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150
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freebayes running error on public data
variant calling alignment freebayes bam file written 4 months ago by anithanagaraj93 • 0
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Freebayes 'bamleftalign' function usage issues (Part of the 'Du Novo' Sequencing pipeline)
du novo alignment freebayes written 4 months ago by jmath97 • 10
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Freebayes variant calling understanding
freebayes snp written 12 months ago by User000 • 440 • updated 4 months ago by Biostar ♦♦ 20
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VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv written 5 months ago by mark.rose • 40
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Converting MNP to SNP
vcf freebayes snp written 3.4 years ago by finswimmer ♦ 14k • updated 5 months ago by cicindel • 40
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FreeBayes :the tag "DP4" is not defined in the VCF header
freebayes written 7 months ago by sami • 20
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269
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Genotype call incorrect in freebayes output?
vcf freebayes genotype written 8 months ago by najoshi • 30 • updated 7 months ago by mutasim806 • 0
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Filter a VCF file using Galaxy
vcf galaxy freebayes written 9 months ago by ani.d.khachatryan • 0 • updated 7 months ago by Biostar ♦♦ 20
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Clustering of SNPs toward same QUAL values
quality freebayes snp variants written 7 months ago by Begonia_pavonina • 20 • updated 7 months ago by Biostar ♦♦ 20
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How to compare VCF files called from different reference genomes?
vcf picard alignment freebayes snp written 7 months ago by Begonia_pavonina • 20
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How to extract uniquely aligned paired end reads obtained from freebayes using diffrent parmeter combinations of samtools?
ngs read filtering samtools freebayes written 8 months ago by nadiabeg.comsats • 0
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209
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Freebayes adjusting parameters to "force" homozygous call
variant calling freebayes written 12 months ago by User000 • 440 • updated 10 months ago by Biostar ♦♦ 20
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Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 10 months ago by User000 • 440 • updated 10 months ago by gubrins • 70
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freebayes haplotype calling (phased variants)
freebayes haplotype phase variant phased written 5.0 years ago by mark.rose • 40 • updated 11 months ago by mikemc • 10
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freebayes for snp call in pooled samples: how do I set the parameters?
pooled ploidy freebayes snp written 11 months ago by cristiana.ij.marques • 0
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Filter out supplementary aligned reads for variant calling or not
freebayes bwa snp written 11 months ago by gb • 1.9k
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How to determine which bam/sam lines correspond to called structural variant using Freebayes
variant calling freebayes snp written 12 months ago by mdriskil • 10
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439
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Problem succesfully running freebayes
vcf fasta freebayes written 14 months ago by ja4123 • 0
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594
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File not suitable for fasta index generation.
fasta freebayes index written 14 months ago by ja4123 • 0 • updated 14 months ago by Pierre Lindenbaum ♦ 134k
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685
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Unable to find FASTA index entry for '1'
fasta vcf bam freebayes written 14 months ago by ja4123 • 0
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How to filter SNP and Indel under these criteria?
indel vcffilter freebayes vcftools snp written 15 months ago by r00628112 • 10 • updated 14 months ago by devarora • 320
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Segmentation fault Freebayes
freebayes snp error segmentation written 15 months ago by luzglongoria • 40
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255
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Variant using freebayes
tetraploid genome freebayes 10x genomics written 15 months ago by nadiabeg.comsats • 0 • updated 15 months ago by colindaven • 2.6k
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398
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How to subset bamfile based on chromosome IDs
bam freebayes subset written 17 months ago by mernster • 0 • updated 17 months ago by ATpoint ♦ 46k
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Freebayes haplotype calling
variantcall haplotype freebayes snp written 19 months ago by k.itokawa • 0 • updated 19 months ago by colindaven • 2.6k
<prev • 86 results • page 1 of 3 • next >
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