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Pairwise Fst values derived from different algorithms?
pairwise fst population genetics statistics fst written 7 weeks ago by giulia.trauzzi • 0
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1
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242
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1
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How to plot figure?
vcf wgs fst plot written 4 months ago by devarora • 330 • updated 4 months ago by GenoMax ♦ 96k
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333
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Negative Fst values from VCFtools result
genome vcftool fst snp written 5 months ago by nitinra • 10 • updated 5 months ago by GenoMax ♦ 96k
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224
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calculate weighed Fst value based on sliding window Fst calculations
fst population genetics written 8 months ago by Cecelia • 20
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660
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1
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Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 18 months ago by doodle • 30 • updated 10 months ago by pooja.singh09 • 0
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Lositan using 2 populations only? Loci falling in straight line where Fst=He
fdist fst lositan heterozygosity written 5.4 years ago by lauren.c.white89 • 0 • updated 10 months ago by Biostar ♦♦ 20
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367
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1
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How to pass a variable to vcftools --weir-fst-pop
fst vcftools bash written 12 months ago by Luther_Blisset • 20
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1
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492
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1
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Adjusting the Fst values for different sample sizes
population genetic fixation index fst snp written 12 months ago by Siavash Salek Ardestani • 20 • updated 12 months ago by Fabio Marroni • 2.7k
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565
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angsd Fst outlier
pvalue outlier fst manhattan angsd written 14 months ago by jcolella.jc • 0 • updated 13 months ago by Biostar ♦♦ 20
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305
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calculate fst for every allele in any position
fst snp written 15 months ago by mostafarafiepour • 110
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358
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per site max fst and avg fst within windows?
fst snp written 16 months ago by mrfz003 • 0
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792
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Using BCFtools to obtain between population Fst values from vcf file
vcf bcftools fst snp weir and cockerham written 16 months ago by ishengomae • 110
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290
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Generating FST values from RRBS data
bisulfite sequencing rrbs snp fst written 17 months ago by alan.g.hudson • 0
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selection signatures using fst method
bovine snp data plink selection signatures fst written 17 months ago by kas • 0
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352
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Fst Visulization from WGS data
R next-gen fst snp wgs written 18 months ago by jaafari.omid • 50
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335
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Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 18 months ago by doodle • 30
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371
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Post Fst calculation analysis
population structure diversity loci fst snp written 19 months ago by doodle • 30
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801
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Window-based Fst analysis
population genetic fst written 19 months ago by seta • 1.4k
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399
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How to begin with Fst calculation of SNPs from two different populations
populations fst snp written 19 months ago by doodle • 30
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513
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Calculate Fst between pairs of population : Tool Used?
R tools population fst snp written 21 months ago by shreyajha • 30
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1
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410
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1
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How to perform fst test using SNPs frequency?
fst snp written 22 months ago by Abdul Rafay Khan • 1.1k
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How to set the size of window for calculating Fst?
window fst snp written 22 months ago by serpalma.v • 60
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How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools written 23 months ago by serpalma.v • 60 • updated 23 months ago by h.mon ♦ 32k
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Plotting Fst or zFst value
z-score fst manhattan plot written 2.0 years ago by seta • 1.4k
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How vcftools calculate Fst value?
populations fst vcftools written 2.1 years ago by seta • 1.4k
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1.0k
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Fst calculation between my own population and 1000 genome populations
population 1000 genome fst written 2.2 years ago by seta • 1.4k • updated 2.2 years ago by cetin.m • 50
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the function of readVCF in PopGenome R package
vcf R popgenome fst written 2.3 years ago by mike229lin • 20 • updated 2.2 years ago by Biostar ♦♦ 20
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calculating allele frequency difference or Fst value ?
allele frequency population fst written 2.4 years ago by seta • 1.4k • updated 2.3 years ago by paolo002 • 160
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How to calculate Hudson's Fst at Population and SNP level?
population differentiation fst snp written 5.9 years ago by bibb77 • 80 • updated 2.3 years ago by Mr Locuace • 100
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Which method to calculate pairwise Fst from SNP data
fst snp written 2.4 years ago by loisrancilhac • 0
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