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<prev • 86 results • page 1 of 3 • next >
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Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 9 months ago by doodle • 30 • updated 4 weeks ago by pooja.singh09 • 0
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Lositan using 2 populations only? Loci falling in straight line where Fst=He
fdist fst lositan heterozygosity written 4.6 years ago by lauren.c.white89 • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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137
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1
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How to pass a variable to vcftools --weir-fst-pop
fst vcftools bash written 12 weeks ago by gary.napier • 20
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201
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1
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Adjusting the Fst values for different sample sizes
population genetic fixation index fst snp written 3 months ago by Siavash Salek Ardestani • 20 • updated 3 months ago by Fabio Marroni • 2.5k
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angsd Fst outlier
pvalue outlier fst manhattan angsd written 4 months ago by jcolella.jc • 0 • updated 4 months ago by Biostar ♦♦ 20
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161
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calculate fst for every allele in any position
fst snp written 5 months ago by mostafarafiepour • 70
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per site max fst and avg fst within windows?
fst snp written 6 months ago by mrfz003 • 0
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331
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Using BCFtools to obtain between population Fst values from vcf file
vcf bcftools fst snp weir and cockerham written 6 months ago by ishengomae • 100
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195
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Generating FST values from RRBS data
bisulfite sequencing rrbs snp fst written 8 months ago by alan.g.hudson • 0
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selection signatures using fst method
bovine snp data plink selection signatures fst written 8 months ago by kas • 0
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223
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Fst Visulization from WGS data
R next-gen fst snp wgs written 8 months ago by jaafari.omid • 50
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221
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Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 9 months ago by doodle • 30
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255
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Post Fst calculation analysis
population structure diversity loci fst snp written 10 months ago by doodle • 30
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382
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Window-based Fst analysis
population genetic fst written 10 months ago by seta • 1.3k
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281
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How to begin with Fst calculation of SNPs from two different populations
populations fst snp written 10 months ago by doodle • 30
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Calculate Fst between pairs of population : Tool Used?
R tools population fst snp written 12 months ago by shreyajha • 30
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284
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How to perform fst test using SNPs frequency?
fst snp written 12 months ago by Abdul Rafay Khan • 1.1k
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616
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How to set the size of window for calculating Fst?
window fst snp written 13 months ago by serpalma.v • 40
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How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools written 14 months ago by serpalma.v • 40 • updated 14 months ago by h.mon ♦ 29k
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616
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Plotting Fst or zFst value
z-score fst manhattan plot written 15 months ago by seta • 1.3k
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How vcftools calculate Fst value?
populations fst vcftools written 16 months ago by seta • 1.3k
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775
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Fst calculation between my own population and 1000 genome populations
population 1000 genome fst written 17 months ago by seta • 1.3k • updated 17 months ago by cetin.m • 50
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the function of readVCF in PopGenome R package
vcf R popgenome fst written 18 months ago by mike229lin • 20 • updated 17 months ago by Biostar ♦♦ 20
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calculating allele frequency difference or Fst value ?
allele frequency population fst written 19 months ago by seta • 1.3k • updated 18 months ago by paolo002 • 160
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How to calculate Hudson's Fst at Population and SNP level?
population differentiation fst snp written 5.2 years ago by bibb77 • 80 • updated 18 months ago by Mr Locuace • 100
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Which method to calculate pairwise Fst from SNP data
fst snp written 19 months ago by loisrancilhac • 0
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Calculating Fst for Multiallelic variants in VCFs
vcf multiallelic fst written 21 months ago by ma17 • 10
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458
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Strange FST values
plink vcftools fst written 22 months ago by hdtms • 20
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Fst between the combination of populations (pairwise)
pairwise fst plink written 24 months ago by cmcouto.silva • 30 • updated 23 months ago by Biostar ♦♦ 20
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Fst calculation with VCFtools
pooled vcftools fst written 23 months ago by Dracaena • 40
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