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3
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1
answer
170
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1
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How to plot figure?
vcf wgs fst plot written 6 weeks ago by devarora • 240 • updated 6 weeks ago by genomax ♦ 92k
0
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0
answers
180
views
0
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Negative Fst values from VCFtools result
genome vcftool fst snp written 8 weeks ago by nitinra • 0 • updated 8 weeks ago by genomax ♦ 92k
0
votes
0
answers
146
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0
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calculate weighed Fst value based on sliding window Fst calculations
fst population genetics written 5 months ago by Cecelia • 20
0
votes
1
answer
508
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1
answer
Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 15 months ago by doodle • 30 • updated 6 months ago by pooja.singh09 • 0
0
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0
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1.2k
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0
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Lositan using 2 populations only? Loci falling in straight line where Fst=He
fdist fst lositan heterozygosity written 5.1 years ago by lauren.c.white89 • 0 • updated 7 months ago by Biostar ♦♦ 20
0
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1
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283
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1
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How to pass a variable to vcftools --weir-fst-pop
fst vcftools bash written 8 months ago by gary.napier • 20
1
vote
1
answer
382
views
1
answer
Adjusting the Fst values for different sample sizes
population genetic fixation index fst snp written 9 months ago by Siavash Salek Ardestani • 20 • updated 9 months ago by Fabio Marroni • 2.6k
0
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0
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450
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0
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angsd Fst outlier
pvalue outlier fst manhattan angsd written 10 months ago by jcolella.jc • 0 • updated 10 months ago by Biostar ♦♦ 20
0
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0
answers
237
views
0
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calculate fst for every allele in any position
fst snp written 11 months ago by mostafarafiepour • 80
0
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0
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291
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0
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per site max fst and avg fst within windows?
fst snp written 12 months ago by mrfz003 • 0
1
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0
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612
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0
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Using BCFtools to obtain between population Fst values from vcf file
vcf bcftools fst snp weir and cockerham written 12 months ago by ishengomae • 110
0
votes
0
answers
241
views
0
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Generating FST values from RRBS data
bisulfite sequencing rrbs snp fst written 14 months ago by alan.g.hudson • 0
0
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0
answers
229
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0
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selection signatures using fst method
bovine snp data plink selection signatures fst written 14 months ago by kas • 0
0
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0
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300
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0
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Fst Visulization from WGS data
R next-gen fst snp wgs written 14 months ago by jaafari.omid • 50
0
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0
answers
296
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0
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Permutation of Fst statistics of genotyped data to get p value
pvalue fst plink empirical pvalue genotype written 15 months ago by doodle • 30
0
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0
answers
336
views
0
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Post Fst calculation analysis
population structure diversity loci fst snp written 16 months ago by doodle • 30
0
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0
answers
651
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0
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Window-based Fst analysis
population genetic fst written 16 months ago by seta • 1.4k
0
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0
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341
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0
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How to begin with Fst calculation of SNPs from two different populations
populations fst snp written 16 months ago by doodle • 30
1
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0
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446
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0
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Calculate Fst between pairs of population : Tool Used?
R tools population fst snp written 18 months ago by shreyajha • 30
1
vote
1
answer
365
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1
answer
How to perform fst test using SNPs frequency?
fst snp written 18 months ago by Abdul Rafay Khan • 1.1k
1
vote
0
answers
889
views
0
answers
How to set the size of window for calculating Fst?
window fst snp written 19 months ago by serpalma.v • 60
0
votes
0
answers
921
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0
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How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
fst vcftools written 20 months ago by serpalma.v • 60 • updated 20 months ago by h.mon ♦ 31k
0
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0
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837
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0
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Plotting Fst or zFst value
z-score fst manhattan plot written 21 months ago by seta • 1.4k
0
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0
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2.3k
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0
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How vcftools calculate Fst value?
populations fst vcftools written 22 months ago by seta • 1.4k
0
votes
1
answer
913
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1
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Fst calculation between my own population and 1000 genome populations
population 1000 genome fst written 23 months ago by seta • 1.4k • updated 23 months ago by cetin.m • 50
0
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0
answers
951
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0
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the function of readVCF in PopGenome R package
vcf R popgenome fst written 2.0 years ago by mike229lin • 20 • updated 23 months ago by Biostar ♦♦ 20
0
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2
answers
1.7k
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2
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calculating allele frequency difference or Fst value ?
allele frequency population fst written 2.1 years ago by seta • 1.4k • updated 24 months ago by paolo002 • 160
2
votes
5
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5.3k
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5
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How to calculate Hudson's Fst at Population and SNP level?
population differentiation fst snp written 5.6 years ago by bibb77 • 80 • updated 2.0 years ago by Mr Locuace • 100
0
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0
answers
2.1k
views
0
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Which method to calculate pairwise Fst from SNP data
fst snp written 2.1 years ago by loisrancilhac • 0
0
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0
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925
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0
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Calculating Fst for Multiallelic variants in VCFs
vcf multiallelic fst written 2.2 years ago by ma17 • 10
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