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Is there a database of proteins and their functional residues?

transcription databases proteins functional domain written 2.7 years ago by nida.farheen • 0 • updated 2.7 years ago by Hussain Ather • 940

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Recent Replies

C: Annotating VCF files by vinayjrao • 180
Thank you both for the suggestions. I will certainly try these options.
A: how to interpret a CNV scatter plot by sara_beygi87 • 0
![scatter plots from chr 3 in patients B and C][1] [1]: https://ibb.co/jhMXwFT
C: Failed to convert bamToBed, pair-end by Alex Reynolds ♦ 30k
Perhaps try `bam2bed --split`
C: Annotating an assembled GTF file by JRS • 0
Hey, same question here. Have you solve it?
A: Failed to convert bamToBed, pair-end by swbarnes2 ♦ 8.6k
Your read names for read 1 and read2 do not match perfectly, so the software doesn't think they a...
C: Failed to convert bamToBed, pair-end by MJ • 0
Thanks for your reply. The original bam file is already name sorted. I resorted it though, it st...
C: [ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in by helenhuang.math • 0
Hi Guangchuang, thanks for the suggestion. Adding `addFlankGeneInfo` and `flankDistance` is usefu...
C: Failed to convert bamToBed, pair-end by genomax ♦ 90k
You should name sort the BAM file. samtools sort -n -o sorted.bam your.bam That will bring...
A: paired reads aligned at the same genomic position by MatthewP • 740
Paired reads align at same position probably because some insert fragments is too short that even...
A: sparse peak calling by AS • 0
You can try SEACR : https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-019...
C: sparse peak calling by kanwarjag • 1.0k
The low read depths and background levels and broader peaks. To be more precise the background is...
C: sparse peak calling by rpolicastro • 1.7k
Do you mind defining what you consider sparse peaks?

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