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Fusion Isoform Quantification

fusion isoform written 5.2 years ago by Nicolas Rosewick ♦ 7.6k • updated 17 days ago by Biostar ♦♦ 20

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How can I filter my RNA-seq transcript data to display ONLY novel isoforms and variants?

fusion isoforms rna-seq splice-variant written 6 weeks ago by wolfgang.rumpf • 10 • updated 10 days ago by geek_y ♦ 9.6k

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Recent Replies

C: Which are the protein classes by carlos_marchi • 40
Olá Kevin! Eu vi no site do drugbank uma classificação de proteínas alvos de drogas, podendo ser ...
A: biojava get qualityscores of sequence by dariober ♦ 10k
Maybe you are making things more complicated than they need in your code. Wouldn't this work? ...
C: Which are the protein classes by carlos_marchi • 40
Hi Kevin! In fact, I'd like to know if there is a functional classification of proteins that is u...
C: visualizing the Shallow whole genome sequencing on the UCSC by ATpoint ♦ 17k
There are many tools for this available. Please use google and the search functions for recommend...
C: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags by genomax ♦ 67k
You can also change the Q scores to `phred+33` by using the following program from BBMap suite be...
C: visualizing the Shallow whole genome sequencing on the UCSC by Sara • 30
@ ATpoint: thanks. do you know how I can find copy numbers (CNVs)?
C: same experiment, different values with my heat map. Any help? by ATpoint ♦ 17k
You're very welcome.
C: visualizing the Shallow whole genome sequencing on the UCSC by ATpoint ♦ 17k
How did you generate that track? I would go with deeptools `bamCoverage` to get a bigwig track.
C: visualizing the Shallow whole genome sequencing on the UCSC by ATpoint ♦ 17k
Yep, please also see https://www.biostars.org/p/309884/, made the changes for you this time.
C: visualizing the Shallow whole genome sequencing on the UCSC by SMK • 430
Hi Sara, I think you need to change the picture markdown to: ``` [ucsc_example][1] [1]: https...
C: how can i predict the interface site of RNA with protein by natasha.sernova • 3.4k
I see. You need a different approach, like this one. https://github.com/xypan1232/iDeepE or thi...
C: how can i predict the interface site of RNA with protein by bangbang3332 • 0
![none of them can been used.....][1] [1]: https://ibb.co/8j6Sn4b

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