Showing: gagereset
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How can we find the list of genes involved in each pathway using Gage?
pathways rna-seq gage written 18 months ago by Tania120 • updated 8 weeks ago by giderk0
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View gene list in GAGE enriched terms
gene ontology gsea gage written 14 months ago by mbk0asis430 • updated 8 weeks ago by giderk0
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Discrepancy in gene set size between gage() and geneData()
pathview gage kegg pathway analysis written 3.4 years ago by serpalma.v20 • updated 10 months ago by RamRS22k
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which qvalue to use in pathway analysis using gage, same.dir?
pathways rna-seq gage written 15 months ago by Daisy60 • updated 15 months ago by h.mon26k
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Gage duplicate identifiers as row names
gage bacteria kegg rna-seq entrezid written 17 months ago by bsp01720 • updated 17 months ago by h.mon26k
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Up and down pathways are the same?
pathways gage written 18 months ago by Tania120
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Can't fetch pathways by entrez id?
pathways gage written 18 months ago by Tania120
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Error: Pathway analysis using Sleuth results
R sleuth pathview rna-seq gage written 2.6 years ago by bioinfo8120 • updated 2.2 years ago by bigmawen310
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathway R rna-seq gsea gage written 2.2 years ago by snishtala0310 • updated 2.2 years ago by bigmawen310
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GAGE - eg2sym (ID conversion)
gage kegg gsea rna-seq written 2.9 years ago by mbk0asis430 • updated 2.9 years ago by Guangchuang Yu2.2k
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normalized input data for GAGE (R) - log-transformed or not?
gene set analysis gage microarray R written 3.2 years ago by AdrijaK0 • updated 3.2 years ago by bigmawen310
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Difference between GSEA and GAGE analyses.
gene set analysis gage gsea gene set enrichment R written 3.5 years ago by m.k.priebe0 • updated 3.5 years ago by informatics bot570
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Mapping mouse gene symbols to Entrez IDs in GAGE
gage deseq2 pathview gsea rna-seq written 3.7 years ago by bojingjia10 • updated 3.7 years ago by bigmawen310
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Set control vs experiment for gage/pathview!
gage control vs experiment written 5.1 years ago by Parham1.4k • updated 5.1 years ago by Devon Ryan91k
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Annotation for S. pombe in gage.
s. pombe gage written 5.1 years ago by Parham1.4k • updated 5.1 years ago by Devon Ryan91k
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