Showing: gatkreset
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Determining ploidy via read ratios with HaplotypeCaller: skewed results?
gatk ploidy illumina snp R written 2.8 years ago by mmats01060 • updated 2 days ago by Biostar ♦♦ 20
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GATK FilterMutectCalls parameter max germline posterior ?
gatk threshold tool mutect2 written 3 days ago by jackyen0 • updated 3 days ago by ATpoint21k
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Vcf produced after ApplyVSQR step
gatk applyvsqr written 13 days ago by BAGeno140 • updated 13 days ago by andrew.j.skelton735.8k
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Analysis of exome samples build from different exome kits
exome gatk interval written 17 days ago by Nicolas Rosewick8.0k • updated 17 days ago by andrew.j.skelton735.8k
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Can Mutect2 be used for paper?
gatk mutect2 written 18 days ago by Laven90 • updated 18 days ago by Nicolas Rosewick8.0k
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Can You Please Tell Me Where I Find Information About .Fai File Format?
maf gatk written 9.2 years ago by Biomed4.5k • updated 20 days ago by John Marshall1.7k
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random selection of multi-sample vcf does not work
selectvariants gatk selectrandomfraction written 21 days ago by mernster0 • updated 21 days ago by finswimmer12k
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Pipe SamToFastq, BWA mem not working
gatk sam bwa pipe written 4 weeks ago by abbysue10 • updated 22 days ago by Biostar ♦♦ 20
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NA12878 High Confidence Callset Sequence Dictionaries
genome vcf alignment tool gatk written 24 days ago by ilee660 • updated 24 days ago by ATpoint21k
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BQSR: when it is applicable?
gatk bqsr base quality written 22 months ago by lamteva.vera160 • updated 25 days ago by demolidd7740
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VQSRTranche filters in GATK
gatk next-gen snp written 19 months ago by anu014170 • updated 27 days ago by nawar820
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Empty output of allele specific expression analysis by GATK
gatk ase rna-seq wgs written 4 weeks ago by F3.4k • updated 4 weeks ago by RamRS23k
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GATK SplitNCigarReads Error
gatk variant rna-seq written 4 weeks ago by BAGeno140
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Bowtie2 hg19 reference for gatk MuTect
gatk bowtie2 written 5 weeks ago by varsha61980 • updated 5 weeks ago by h.mon26k
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GATK -Xmx4G and -Xmx8G
haplotypecaller gatk bioinformatics written 6 weeks ago by alhamidi.reem10 • updated 6 weeks ago by andrew.j.skelton735.8k
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