Showing: gatkreset
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How about my parallel bwa+gatk pipeline?
gatk ngs parallel pipeline written 2 days ago by bluemonster080830 • updated 2 days ago by JJ80
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SNP calling using cancer cell lines
gatk snp written 4 days ago by JJ80 • updated 4 days ago by Sean Davis23k
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GATK HC not calling variants at the edges after clipping probes
gatk sequencing written 8 days ago by nbhardwaj80 • updated 8 days ago by Kevin Blighe7.1k
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dbsnp hg 38
dbsnp gatk hg38 baserecalibrator written 14 days ago by noeD70 • updated 13 days ago by finswimmer600
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How to set the GATK_PATH of PolySolver
gatk hla polysolver samtofastq written 5 months ago by shiyang9320 • updated 16 days ago by maduh1710
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Why the optimal value of BQSR intervals is 20
wgs gatk written 11 weeks ago by bluemonster080830 • updated 18 days ago by dariober8.2k
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In GATK, SNPs and INDELs are called separately or together?
indel gatk variant snp written 9 months ago by Chen590 • updated 19 days ago by Biostar ♦♦ 20
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bwa mem: Passing a variable to read group
variant calling bwa-mem alignment bwa gatk written 22 days ago by rmf90 • updated 22 days ago by Pierre Lindenbaum101k
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BQSR: when it is applicable?
gatk bqsr base quality written 26 days ago by lamteva.vera120 • updated 26 days ago by finswimmer600
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Forum: Are you using GATK ?
gatk4 gatk forum written 26 days ago by tiffanym20
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variant Recalibrator, -an option
gatk variant recalibrator -an written 29 days ago by noeD70 • updated 29 days ago by Pierre Lindenbaum101k
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GATK hg19 bundle question
gatk written 5 weeks ago by genetic20 • updated 4 weeks ago by Biostar ♦♦ 20
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 5.0 years ago by Pierre Lindenbaum101k • updated 4 weeks ago by Biostar ♦♦ 20
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How to make variant calling run faster?
variant calling gatk mutect2 written 4 weeks ago by steve1.1k • updated 4 weeks ago by Brian Bushnell14k
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Genotype calls for a list of variable sites
variant-calling gatk genotype-calling written 5 weeks ago by Jautis240 • updated 5 weeks ago by Pierre Lindenbaum101k
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variant calling by GATK question about alignment
gatk alignment written 5 weeks ago by rob.costa1234120 • updated 5 weeks ago by ijaz786besanttech0
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GATK filtering console error
gatk snp tool filtering linux written 5 weeks ago by makarenko10010 • updated 5 weeks ago by Pierre Lindenbaum101k
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GATK AnnotateLikelyPathogenic strange error
gatk java written 8 weeks ago by Ram12k
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