Showing: gatkreset
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4
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3
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159
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6 follow
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RealignerTargetCreator inputs multiple Bams??
gatk bam realignertargetcreator written 3 days ago by micro32uvas0 • updated 3 days ago by Devon Ryan65k
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64
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0
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2
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143
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0
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107
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pre-processing whole genome data
dbsnp.vcf gatk rhesus macaque written 19 days ago by br.tania0 • updated 19 days ago by genomax27k
1
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0
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116
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0
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0
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1
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104
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1
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What is ploidy level for HaplotypeCaller ?
genome gatk snp written 23 days ago by mirzaei86.vahid10 • updated 23 days ago by WouterDeCoster17k
3
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1
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114
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1
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Malformed BAM file produced by BWA
gatk picard samtools written 26 days ago by joreamayarom70 • updated 26 days ago by Pierre Lindenbaum93k
7
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1
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115
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1
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Do I have to realign from scratch?
gatk incompatible contigs written 27 days ago by Kasthuri210 • updated 27 days ago by genomax27k
3
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2
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156
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2
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Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 28 days ago by Sukhdeep Singh8.8k • updated 27 days ago by Brian Bushnell11k
20
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5
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13k
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15 follow
5
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How To Split Multiple Samples In Vcf File Generated By Gatk?
vcf gatk split written 3.8 years ago by newDNASeqer540 • updated 4 weeks ago by Biostar ♦♦ 10
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110
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1
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0
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3
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138
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5 follow
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11
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675
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5 follow
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2
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1
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104
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1
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Outputting DP4 flag in GATK
variant calling gatk sequencing written 6 weeks ago by Jautis230 • updated 6 weeks ago by Santosh Anand2.2k
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92
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0
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0
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1
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139
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1
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GATK IndelGenotyperV2 error
gatk written 10 weeks ago by divya.srivastava3310 • updated 7 weeks ago by Ray Lee0
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98
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Ts/Tv ratio of 1.7
exome gatk snpeff written 7 weeks ago by jarod_v610
2
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129
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0
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1
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0
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122
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GATK: -nct and -nt
gatk parallel written 7 weeks ago by fire_water50
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3
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260
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3
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0
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0
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106
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0
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1
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1
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151
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1
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1
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0
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152
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Java memory issue in GATK
haplotypecaller gatk java written 9 weeks ago by boymin20200 • updated 9 weeks ago by genomax27k
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205
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2
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Getting error in running GATK (GenomeAnalysisTK-3.7)?
gatk picard mutation rna-seq written 9 weeks ago by Snijesh0 • updated 9 weeks ago by youcai10
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148
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0
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129
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134
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