Showing: gatkreset
<prev • 567 results • page 1 of 19 • next >
0
votes
0
answers
29
views
0
answers
12
votes
0
answers
178
views
0
answers
0
votes
0
answers
71
views
0
answers
use gatk phased vcf as input file of HapCut2
hapcut2 gatk vcf phasing written 15 days ago by Peter Chung70 • updated 5 days ago by Ram15k
0
votes
1
answer
98
views
1
answer
Calculate Depth with and without Soft-Clipping
gatk bam alignment sequencing written 7 days ago by ccnn0 • updated 7 days ago by Pierre Lindenbaum107k
2
votes
1
answer
84
views
1
answer
4
votes
1
answer
1.1k
views
1
answer
[ERROR] Malformed VCF: empty alleles are not permitted in VCF records
vcf gatk rna-seq written 2.3 years ago by umn_bist300 • updated 8 days ago by Biostar ♦♦ 20
0
votes
0
answers
144
views
0
answers
Log-odds based filtering and pairHMM alignment during local realignment
gatk mutect bayes written 9 weeks ago by CY130 • updated 9 days ago by Biostar ♦♦ 20
2
votes
1
answer
84
views
1
answer
0
votes
1
answer
76
views
1
answer
2
votes
1
answer
228
views
1
answer
0
votes
0
answers
78
views
0
answers
3
votes
1
answer
272
views
1
answer
2
votes
1
answer
129
views
1
answer
0
votes
1
answer
86
views
1
answer
GATK gradlew bundle Error
software error gatk written 4 weeks ago by Abdul Rafay Khan810 • updated 4 weeks ago by dariober9.1k
4
votes
2
answers
788
views
2
answers
3
votes
2
answers
718
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 5 months ago by Yatros10 • updated 5 weeks ago by prnsml0
5
votes
2
answers
152
views
5 follow
2
answers
Is indel realigning necessary for INDEL discovery?
indel gatk indelrealigner written 5 weeks ago by deepti1rao0 • updated 5 weeks ago by Jorge Amigo10k
2
votes
1
answer
102
views
1
answer
What's 1000 Genome indel calls??
gatk 1000genome realignertargetcreater written 5 weeks ago by 2012secondseason10 • updated 5 weeks ago by h.mon14k
3
votes
0
answers
151
views
0
answers
3
votes
0
answers
179
views
5 follow
0
answers
1
vote
1
answer
113
views
1
answer
GATK Error on variant filteration
gatk sor filter written 6 weeks ago by deepak.k.choubey20 • updated 6 weeks ago by Pierre Lindenbaum107k
2
votes
1
answer
166
views
1
answer
WARN in GATK HaplotypeCaller
haplotypecaller gatk snp written 7 weeks ago by siyavash_damdar20 • updated 7 weeks ago by Ram15k
0
votes
0
answers
152
views
0
answers
InDel marker using GATK and Mummer
genome gatk mummer sequence written 7 weeks ago by anithabioinfor0 • updated 7 weeks ago by vdauwera750
1
vote
1
answer
141
views
1
answer
GATK: .ped vs .fam and missing values
variant-calling gatk snp written 7 weeks ago by rmf270 • updated 7 weeks ago by Kevin Blighe19k
9
votes
1
answer
346
views
1
answer
Variant Calls: Freebayes vs GATK
.vcf gatk freebayes written 8 weeks ago by oars110 • updated 7 weeks ago by vdauwera750
1
vote
0
answers
126
views
0
answers
1
vote
1
answer
244
views
1
answer
Mutect2 filtering log-odds (LOD) threshold
gatk mutect written 8 weeks ago by CY130
2
votes
3
answers
265
views
3
answers
Realignment disappeared in gatk4
gatk realignment written 8 weeks ago by fabbri.marco0 • updated 8 weeks ago by igor6.0k
1
vote
0
answers
127
views
0
answers
combineVariants error for merging two vcf files
gatk combinevariants snp written 8 weeks ago by GK161030 • updated 8 weeks ago by Pierre Lindenbaum107k
3
votes
1
answer
119
views
1
answer
<prev • 567 results • page 1 of 19 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1956 users visited in the last hour