Showing: gatkreset
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snpEff database to annotate b37 GATK output
gatk snpeff written 9 weeks ago by Helene370 • updated 6 days ago by hns130
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How to only show SNPs in vcf files
vcf gatk snp written 8 days ago by Joe20 • updated 8 days ago by Pierre Lindenbaum95k
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 12 days ago by aagata.szymanek10 • updated 12 days ago by Pierre Lindenbaum95k
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Pindel and GATK AD Concordance
variant calling gatk allele depth pindel written 16 days ago by jsneaththompson0 • updated 16 days ago by Dan Gaston6.8k
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VQSLOD score different for Full and split (by chromosome) BAM file
vcf gatk written 11 weeks ago by dasdevashishdas120 • updated 23 days ago by Biostar ♦♦ 20
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Getting error in running GATK (GenomeAnalysisTK-3.7)?
gatk picard mutation rna-seq written 3 months ago by Snijesh0 • updated 25 days ago by LLinging000
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News: GATK returns to a fully open-source license
gatk news written 4 weeks ago by Istvan Albert ♦♦ 71k
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What Are The Open Source Alternatives To Gatk?
gatk written 4.4 years ago by scottsmith1180 • updated 4 weeks ago by Brian Bushnell12k
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RealignerTargetCreator inputs multiple Bams??
gatk bam realignertargetcreator written 5 weeks ago by micro32uvas0 • updated 5 weeks ago by Devon Ryan68k
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pre-processing whole genome data
dbsnp.vcf gatk rhesus macaque written 7 weeks ago by br.tania0 • updated 7 weeks ago by genomax29k
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What is ploidy level for HaplotypeCaller ?
genome gatk snp written 8 weeks ago by mirzaei86.vahid10 • updated 8 weeks ago by WouterDeCoster19k
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Malformed BAM file produced by BWA
gatk picard samtools written 8 weeks ago by joreamayarom80 • updated 8 weeks ago by Pierre Lindenbaum95k
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Do I have to realign from scratch?
gatk incompatible contigs written 8 weeks ago by Kasthuri210 • updated 8 weeks ago by genomax29k
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Any comparisons of read length for variant calling?
assembly next-gen variant snp gatk written 8 weeks ago by Sukhdeep Singh8.8k • updated 8 weeks ago by Brian Bushnell12k
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How To Split Multiple Samples In Vcf File Generated By Gatk?
vcf gatk split written 3.9 years ago by newDNASeqer550 • updated 9 weeks ago by Biostar ♦♦ 20
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Outputting DP4 flag in GATK
variant calling gatk sequencing written 11 weeks ago by Jautis240 • updated 11 weeks ago by Santosh Anand2.3k
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GATK IndelGenotyperV2 error
gatk written 3 months ago by divya.srivastava3310 • updated 11 weeks ago by Ray Lee0
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Ts/Tv ratio of 1.7
exome gatk snpeff written 11 weeks ago by jarod_v610
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