Showing: gatkreset
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snp identification with Haplotypecaller and SelectVariants
gatk snp written 4 days ago by felipead6620 • updated 4 days ago by Pierre Lindenbaum118k
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VariantFiltration warning "undefined variable"
gatk variantfiltration error written 5 days ago by felipead6620 • updated 5 days ago by Pierre Lindenbaum118k
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GATK PrintRead Producing Empty File
gatk printread written 7 days ago by BAGeno120 • updated 7 days ago by Pierre Lindenbaum118k
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Merging variant calls of whole exome and RNA-seq
snvs gatk variants rna-seq indels written 12 days ago by Saad Khan330 • updated 11 days ago by archie70
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How treat a Bam file with mutiple read groups (RG)
gatk next-gen picard read group bam written 19 days ago by zamani_20120 • updated 19 days ago by Pierre Lindenbaum118k
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Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.9 years ago by ewre220 • updated 22 days ago by 4779267570
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SNP Calling Parameter Settings
vcf gatk snp written 8 weeks ago by mcclintock10 • updated 22 days ago by Biostar ♦♦ 20
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VCFParseError: ploidy > 2 not supported
vcf gatk ploidy written 12 weeks ago by always_learning960 • updated 22 days ago by tpoterba40
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Variant calling in large sample populations
genome gatk sequence sequencing written 24 days ago by robjohn70000120 • updated 24 days ago by Pierre Lindenbaum118k
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haplotypeCaller groups comparison
gatk written 5 weeks ago by David150
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Problem installing GATK
software error gatk script ubuntu written 6 weeks ago by j.e.kelly0 • updated 6 weeks ago by finswimmer11k
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Is there a easy to use GATK pipeline for SNP calling?
gatk written 11 months ago by Chen830 • updated 9 weeks ago by francescomusacchia60
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ERROR MESSAGE: QD annotation at VariantRecalibrator
gatk variantrecalibrator snp written 3 months ago by Satyajeet Khare1.3k • updated 9 weeks ago by Biostar ♦♦ 20
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error using bqsr and incompatible contigs
gatk bqsr written 7 months ago by cmccabe180 • updated 9 weeks ago by Biostar ♦♦ 20
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