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Confused about the AF tag in VCF from samtools/bcftools mpileup
vcf gatk samtools af variants written 4 days ago by Makplus T70 • updated 4 days ago by Renesh1.9k
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GATK version differences
gatk written 5 days ago by MAPK1.5k
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GATK Mutect2 Panel-Of-Normals generation
gatk panel-of-normal non-tumor wes mutect2 written 14 days ago by cocchi.e8980 • updated 14 days ago by WouterDeCoster44k
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GATK GenomicsDBImport intervals
gatk gvcf written 26 days ago by MAPK1.5k
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Best tool to merge .vcf files from different variant callers?
vcf gatk annotation snp variants written 10 weeks ago by j.lunger1810 • updated 27 days ago by Biostar ♦♦ 20
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VCF to Fasta with out reference
vcf gatk written 4 weeks ago by the_cowa40
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Evaluating RMSMappingQuality profile to set threshold
variant calling gatk snp filtering written 5 weeks ago by serpalma.v40 • updated 5 weeks ago by Nicolas Rosewick8.8k
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panel of normal files
gatk panel-of-normal hg38 mutect2 hg19 written 9 weeks ago by cocchi.e8980 • updated 5 weeks ago by Biostar ♦♦ 20
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Where can I find GATK SNP calling VCF for NA12878 exome?
vcf gatk na12878 written 10 months ago by gerrybio20100 • updated 7 weeks ago by geocarvalho140
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GATK finding rare variants
gatk written 7 weeks ago by Seigfried70
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GATK BaseRecalibrator Step
gatk written 7 weeks ago by Seigfried70
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gatk collectallelic counts error
gatk java written 7 weeks ago by Peter Chung120
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Filtering phased alleles with GATK
linkage gatk exome variants phased written 3.6 years ago by petersam0 • updated 8 weeks ago by Biostar ♦♦ 20
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Split Vcf File Into Snps And Indels
vcf indel split snp gatk written 8.0 years ago by pablo.riesgo140 • updated 8 weeks ago by hsiaoyi050460
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Multisample VCF to FASTA
vcf fasta gatk written 8 weeks ago by gabri.mochales30 • updated 8 weeks ago by Kevin Blighe61k
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