Showing: gatkreset
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GATK HaplotypeCaller Problems
software error gatk next-gen alignment written 4 weeks ago by chengye10 • updated 20 hours ago by Biostar ♦♦ 20
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Mutect2 "somatic" variants with resistant tissue culture lines
gatk wes mutect2 variants genotyping written 11 days ago by shawn.w.foley400 • updated 3 days ago by Biostar ♦♦ 20
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Is there a easy to use GATK pipeline for SNP calling?
gatk written 12 months ago by Chen830 • updated 14 days ago by johannes.koester10
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Gatk Mutec2 germline resources for mouse
gatk sequencing mm10 written 19 days ago by tarekzakaria.badr30 • updated 19 days ago by h.mon24k
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GATK - gene panel VCF - too many variants - how to filter out
vcf gatk ngs written 23 months ago by stanedav30 • updated 21 days ago by Biostar ♦♦ 20
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What is the tlod in vcf?
gatk tlod mutect2 written 23 days ago by 2yuna7100
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snp identification with Haplotypecaller and SelectVariants
gatk snp written 29 days ago by felipead6630 • updated 29 days ago by Pierre Lindenbaum119k
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VariantFiltration warning "undefined variable"
gatk variantfiltration error written 4 weeks ago by felipead6630 • updated 4 weeks ago by Pierre Lindenbaum119k
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GATK PrintRead Producing Empty File
gatk printread written 4 weeks ago by BAGeno120 • updated 4 weeks ago by Pierre Lindenbaum119k
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Merging variant calls of whole exome and RNA-seq
snvs gatk variants rna-seq indels written 5 weeks ago by Saad Khan330 • updated 5 weeks ago by archie70
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How treat a Bam file with mutiple read groups (RG)
gatk next-gen picard read group bam written 6 weeks ago by zamani_20120 • updated 6 weeks ago by Pierre Lindenbaum119k
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Where To Get The Annotation File For The Nimblegen Seqcap Ez Exome V1
exome gatk variant bwa written 5.9 years ago by ewre220 • updated 6 weeks ago by 4779267570
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SNP Calling Parameter Settings
vcf gatk snp written 12 weeks ago by mcclintock10 • updated 6 weeks ago by Biostar ♦♦ 20
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VCFParseError: ploidy > 2 not supported
vcf gatk ploidy written 3 months ago by always_learning960 • updated 6 weeks ago by tpoterba40
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Variant calling in large sample populations
genome gatk sequence sequencing written 7 weeks ago by robjohn70000120 • updated 7 weeks ago by Pierre Lindenbaum119k
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