Showing: gatkreset
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Why people use gatk v2.3.9lite?
gatk written 5 days ago by bluemonster08080 • updated 5 days ago by h.mon8.0k
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Merging BAM file before running GATK or merging vcf output
vcf gatk snp written 8 days ago by pbigbig180 • updated 8 days ago by Lila M 320
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rna seq genome coverage
gatk picard coverage rna-seq written 10 days ago by ea140210 • updated 10 days ago by geek_y7.8k
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Filtering on MAF using the GATK?
variant filtering gatk snp filtering written 4 weeks ago by jtwalker10 • updated 17 days ago by Biostar ♦♦ 20
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Is GATK overestimating the heterozygous calls?
vcf gatk heterozygous snp written 23 days ago by biobudhan10 • updated 23 days ago by andrew.j.skelton733.6k
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Making a vcf file from a subset of regions from gvcf files
vcf gatk written 29 days ago by Floris Brenk790 • updated 26 days ago by aays60
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GATK VariantFiltration invalid expression
filtration gatk ngs variants written 28 days ago by ciemanek20 • updated 28 days ago by finswimmer360
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Feasible Annotation of 4 million unique SNPs
gatk ase snp written 5 weeks ago by serpalma.v10 • updated 5 weeks ago by Emily_Ensembl12k
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How to filter mutect2 VCF output?
gatk alignment snp mutect2 written 7 weeks ago by Whoknows580 • updated 5 weeks ago by poisonAlien2.4k
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GATK: SNP coverage too high?
gatk written 6 weeks ago by Marvin90 • updated 6 weeks ago by harold.smith.tarheel3.7k
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HapCUT2 using GATK results
hapcut2 gatk vcf phasing written 6 months ago by jyu429120 • updated 6 weeks ago by lloydlow0
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simulating variants with specific frequency using GATK
vcf gatk written 8 weeks ago by christacaggiano20 • updated 6 weeks ago by Biostar ♦♦ 20
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snpEff database to annotate b37 GATK output
gatk snpeff written 4 months ago by Helene390 • updated 8 weeks ago by hns130
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How to only show SNPs in vcf files
vcf gatk snp written 9 weeks ago by Joe30 • updated 9 weeks ago by Pierre Lindenbaum96k
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 9 weeks ago by ciemanek20 • updated 9 weeks ago by Pierre Lindenbaum96k
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Pindel and GATK AD Concordance
variant calling gatk allele depth pindel written 10 weeks ago by jsneaththompson0 • updated 10 weeks ago by Dan Gaston6.8k
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VQSLOD score different for Full and split (by chromosome) BAM file
vcf gatk written 4 months ago by dasdevashishdas120 • updated 11 weeks ago by Biostar ♦♦ 20
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Getting error in running GATK (GenomeAnalysisTK-3.7)?
gatk picard mutation rna-seq written 5 months ago by Mask220 • updated 11 weeks ago by LLinging000
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News: GATK returns to a fully open-source license
gatk news written 12 weeks ago by Istvan Albert ♦♦ 73k
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What Are The Open Source Alternatives To Gatk?
gatk written 4.5 years ago by scottsmith1180 • updated 12 weeks ago by Brian Bushnell13k
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