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genotype 0/0 if no SNPs identified by GATK
genome gatk snp baserecalibrator written 11 days ago by ZUCM0 • updated 6 days ago by Biostar ♦♦ 20
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GATK somatic CNV results
gatk cnv somatic written 18 days ago by cocchi.e89110
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106
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GATK variant calling error
variant calling gatk snp written 18 days ago by endretoth20 • updated 18 days ago by Pierre Lindenbaum131k
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Error in GATK GenomicsDBImport
gatk genomicsdbimport written 7 months ago by raf.marcondes30 • updated 18 days ago by yussab10
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What is "*" in the ALT field of my VCF file
vcf gatk written 24 days ago by Frédéric Bigey290 • updated 24 days ago by Pierre Lindenbaum131k
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162
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93
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Genotype imputation comparison
vcf gatk imputation genotype dosages files written 4 weeks ago by alessandrorsetti0 • updated 4 weeks ago by genomax91k
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BWA-MEM - Improperly Paired Reads
genome gatk next-gen alignment bwa written 4 weeks ago by mglasena0 • updated 4 weeks ago by genomax91k
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Error while merging multiple vcf files using Picard MergeVcfs
genome gatk picard tool snp written 4 weeks ago by nitinra0 • updated 4 weeks ago by Medhat8.8k
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112
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4
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142
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VariantToTable not calling HET HOM etc
gatk variantstotable written 5 weeks ago by geneart$$40 • updated 5 weeks ago by RamRS30k
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panel of normal files
gatk panel-of-normal hg38 mutect2 hg19 written 5 months ago by cocchi.e89110 • updated 5 weeks ago by L_LANKA0
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110
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Error: Could not find or load main class -Xmx4g
haplotypecaller gatk xmx4g snp written 6 months ago by Adriel Rosa0 • updated 6 weeks ago by larryhems0
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CNV .vcf retrieve involved genes
vcf gatk genes cnv written 6 weeks ago by cocchi.e89110
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GATK VQSR output
gatk applyvqsr written 7 weeks ago by geneart$$40
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convert GATK germline CNV .vcf output to .seg/.cns format to plot
vcf gatk seg cnv cns written 7 weeks ago by cocchi.e89110 • updated 7 weeks ago by newbio17240
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How Do I Use Variantfiltration To Filter By Vqslod And/Or The Tranches?
vcf gatk written 8.3 years ago by Jeremy Leipzig19k • updated 7 weeks ago by geneart$$40
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VQSR no r file being created
gatk vqsr written 7 weeks ago by geneart$$40
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