Showing: gatkreset
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How to get sample names and genotype for SNP in multi-sample VCF file
gatk genotype snp written 11 days ago by hellbio280 • updated 10 days ago by Kevin Blighe13k
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RealignerTargetCreator (GATK) contig issue
gatk written 4 weeks ago by win720 • updated 4 weeks ago by Pierre Lindenbaum104k
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Identifying variants differing between control/treatment
variant-calling gatk indel snp written 5 weeks ago by rmf170 • updated 5 weeks ago by Pierre Lindenbaum104k
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156
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Remove all reads failing in ValidateSamFile
gatk bam sam written 5 weeks ago by danny0 • updated 5 weeks ago by Pierre Lindenbaum104k
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GATK Variant calling
variant calling gatk snps written 6 weeks ago by jaqx00810 • updated 6 weeks ago by finswimmer730
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VQSRTranche filters in GATK
gatk next-gen snp written 6 weeks ago by anu014140 • updated 6 weeks ago by Raony GuimarĂ£es780
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Building Snpeff Database
gatk vcftools snp written 5.5 years ago by bioinfo660 • updated 7 weeks ago by rleach0
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PINDEL and somatic mutations
gatk indelrealigned pindel written 4 months ago by Leandro de Mattos70 • updated 8 weeks ago by Biostar ♦♦ 20
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News: Deep learning in GATK4
gatk4 gatk news deep learning written 8 weeks ago by vdauwera620
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Base Recalibration with different dbSNPbuild
gatk dbsnp written 9 weeks ago by jxk9060 • updated 9 weeks ago by Kevin Blighe13k
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Error in Generating sorted.bam
variant calling gatk .sam rna-seq written 10 weeks ago by jaqx00810 • updated 10 weeks ago by GenoMax42k
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Mouse Training Set For Variantrecalibrator
mouse snp gatk written 5.9 years ago by Leandro Batista100 • updated 10 weeks ago by Biostar ♦♦ 20
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GATK Haplotype Caller error
genome gatk next-gen sequencing written 10 weeks ago by kirti.amity0 • updated 10 weeks ago by Pierre Lindenbaum104k
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Getting A Large Vcf File On Variant Calling Through Gatk
vcf gatk variant samtools written 5.3 years ago by Saket Choudhary80 • updated 12 weeks ago by Biostar ♦♦ 20
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Is my precisionFDA result acceptable?
gatk precisionfda written 12 weeks ago by bluemonster080830 • updated 12 weeks ago by Michael Dondrup43k
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