Showing: gatkreset
<prev • 598 results • page 1 of 20 • next >
3
votes
1
answer
1.1k
views
1
answer
best practices to use GATK with PacBio
gatk next-gen sequence snp pacbio written 2.4 years ago by Medhat7.7k • updated 21 hours ago by prasundutta87200
2
votes
0
answers
62
views
0
answers
0
votes
0
answers
844
views
0
answers
XHMM GATK exome sequencing deletions genome wide or selected genes ?
gatk genelist xhmm written 2.6 years ago by Floris Brenk850 • updated 4 days ago by Ram17k
3
votes
1
answer
82
views
1
answer
How can i use combination of both -nct and -nt in GATK?
genome gatk forum next-gen written 7 days ago by mandecent.gupta0 • updated 7 days ago by Ram17k
1
vote
0
answers
83
views
0
answers
2
votes
1
answer
125
views
1
answer
0
votes
0
answers
91
views
0
answers
0
votes
0
answers
94
views
0
answers
0
votes
1
answer
141
views
1
answer
VCF to Bed file format using GATK
vcf gatk rna-seq bed written 4 weeks ago by Sa0 • updated 4 weeks ago by chrchang5233.9k
2
votes
1
answer
152
views
1
answer
gatk vqsr --recal-file error
gatk vqsr written 5 weeks ago by cmccabe170 • updated 5 weeks ago by Santosh Anand3.9k
2
votes
1
answer
122
views
1
answer
error using bqsr and incompatible contigs
gatk bqsr written 5 weeks ago by cmccabe170 • updated 5 weeks ago by h.mon19k
1
vote
1
answer
180
views
1
answer
Hard filtering results of vcf file for multiple samps
variant calling gatk hard filtering written 6 weeks ago by seta1.0k • updated 6 weeks ago by finswimmer5.3k
2
votes
1
answer
154
views
1
answer
GATK MarkDuplicates output and bam
gatk markduplicates written 6 weeks ago by cmccabe170 • updated 6 weeks ago by finswimmer5.3k
0
votes
0
answers
117
views
0
answers
3
votes
1
answer
166
views
1
answer
multithread support for gatk
gatk bqsr written 6 weeks ago by cmccabe170
0
votes
0
answers
209
views
0
answers
VariantsToTable in GATK does not produce the table of all SNPs in the vcf file
gatk written 6 weeks ago by Ana100 • updated 6 weeks ago by finswimmer5.3k
4
votes
1
answer
303
views
1
answer
Locating Multiple Alternate Alleles in gatk.vcf file
vcf gatk written 6 months ago by oars150 • updated 7 weeks ago by Kevin Blighe28k
1
vote
0
answers
206
views
0
answers
2
votes
1
answer
204
views
1
answer
1
vote
1
answer
454
views
1
answer
PINDEL and somatic mutations
gatk indelrealigned pindel written 10 months ago by Leandro de Mattos80 • updated 9 weeks ago by Kevin Blighe28k
8
votes
2
answers
277
views
7 follow
2
answers
Removing Duplicates before aligning
gatk dna-seq next-gen written 9 weeks ago by newbinf0 • updated 9 weeks ago by gb310
0
votes
0
answers
161
views
0
answers
0
votes
0
answers
111
views
0
answers
0
votes
1
answer
232
views
1
answer
0
votes
0
answers
148
views
0
answers
Why not simple Gaussian model instead of Gaussian mixture for VQSR?
vqsr gatk written 3 months ago by CY190 • updated 9 weeks ago by Biostar ♦♦ 20
4
votes
2
answers
145
views
2
answers
Size different between two uBam file which generate from the same Fastq.
gatk bam samtools written 10 weeks ago by weichi10 • updated 10 weeks ago by h.mon19k
0
votes
1
answer
198
views
1
answer
Read group information
gatk picard read group bwa written 10 weeks ago by bwczech0 • updated 10 weeks ago by WouterDeCoster32k
2
votes
2
answers
981
views
2
answers
GBS SNPs calling
fast-gbs gatk snp calling samtools gbs written 19 months ago by shinken12360 • updated 11 weeks ago by Arthur Melo0
16
votes
3
answers
732
views
13 follow
3
answers
How to get sample names and genotype for SNP in multi-sample VCF file
gatk genotype snp written 7 months ago by hellbio330 • updated 11 weeks ago by Pierre Lindenbaum112k
1
vote
1
answer
270
views
1
answer
<prev • 598 results • page 1 of 20 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1674 users visited in the last hour