Showing: gatkreset
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GaTK reverse select interval list
gatk intervallist written 18 days ago by Niek De Klein2.4k • updated 18 days ago by Pierre Lindenbaum98k
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Why people use gatk v2.3.9lite?
gatk written 5 weeks ago by bluemonster08080 • updated 5 weeks ago by h.mon8.7k
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Merging BAM file before running GATK or merging vcf output
vcf gatk snp written 6 weeks ago by pbigbig180 • updated 6 weeks ago by Lila M 350
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rna seq genome coverage
gatk picard coverage rna-seq written 6 weeks ago by ea140210 • updated 6 weeks ago by geek_y8.0k
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Filtering on MAF using the GATK?
variant filtering gatk snp filtering written 9 weeks ago by jtwalker10 • updated 7 weeks ago by Biostar ♦♦ 20
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Is GATK overestimating the heterozygous calls?
vcf gatk heterozygous snp written 8 weeks ago by biobudhan10 • updated 8 weeks ago by andrew.j.skelton733.7k
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Making a vcf file from a subset of regions from gvcf files
vcf gatk written 9 weeks ago by Floris Brenk790 • updated 8 weeks ago by aays60
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GATK VariantFiltration invalid expression
filtration gatk ngs variants written 9 weeks ago by ciemanek20 • updated 9 weeks ago by finswimmer430
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how to calling variants in RNAseq data from multiple samples?
variant calling gatk vc rna-seq written 10 weeks ago by Lila M 350 • updated 9 weeks ago by Samuel Brady230
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Feasible Annotation of 4 million unique SNPs
gatk ase snp written 10 weeks ago by serpalma.v10 • updated 10 weeks ago by Emily_Ensembl13k
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How to filter mutect2 VCF output?
gatk alignment snp mutect2 written 12 weeks ago by Whoknows590 • updated 10 weeks ago by poisonAlien2.4k
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GATK: SNP coverage too high?
gatk written 11 weeks ago by Marvin90 • updated 11 weeks ago by harold.smith.tarheel3.8k
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HapCUT2 using GATK results
hapcut2 gatk vcf phasing written 8 months ago by jyu429120 • updated 11 weeks ago by lloydlow0
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simulating variants with specific frequency using GATK
vcf gatk written 3 months ago by christacaggiano20 • updated 11 weeks ago by Biostar ♦♦ 20
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snpEff database to annotate b37 GATK output
gatk snpeff written 5 months ago by Helene390 • updated 3 months ago by hns130
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How to only show SNPs in vcf files
vcf gatk snp written 3 months ago by Joe30 • updated 3 months ago by Pierre Lindenbaum98k
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VCFtools intersect vs. GATK intersect
vctfools gatk intersect snp sequencing written 3 months ago by ciemanek20 • updated 3 months ago by Pierre Lindenbaum98k
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