Showing: gatk4reset
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps written 12 weeks ago by Mbillah110 • updated 12 weeks ago by WouterDeCoster40k
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VQSR with extremely low TPs (<0.01), How low can tranche goes?
exome vqsr gatk4 snp written 5 months ago by greyman80 • updated 5 months ago by ATpoint21k
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A strange problem with annotation of vcf file
genome annotation vcf bcftools gatk4 written 11 months ago by seta1.2k • updated 8 months ago by zx87547.9k
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GATK best practices for Broad-produced NGS data
gatk4 ngs broadinstitute variantcalling written 8 months ago by Mehulsharma.25310 • updated 8 months ago by vdauwera960
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Temporary Directory Problem in GATK4
gatk4 directory java temporary written 11 months ago by BAGeno140 • updated 8 months ago by Mehulsharma.25310
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Stop GATK MergeBamAlignment from unmapping reads
gatk4 gatk alignment bam mergebamalignment written 8 months ago by ttmigueltt10 • updated 8 months ago by finswimmer12k
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Combining snp and indel vcf files with GATK4
gatk4 varint calling combin variant sortvcf written 10 months ago by seta1.2k • updated 10 months ago by harold.smith.tarheel4.4k
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GATK4 training for beginners
gatk4 training written 18 months ago by emmanouil.a10 • updated 17 months ago by vdauwera960
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Using gVCF mode in HaplotypeCaller ( GATK4)
gatk4 haplotypecaller snp written 18 months ago by ahmad mousavi450 • updated 18 months ago by JJ440
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News: Deep learning in GATK4
gatk4 gatk news deep learning written 20 months ago by vdauwera960
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Forum: Are you using GATK ?
gatk4 gatk forum written 22 months ago by tiffanym20
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