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37
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Filter gmap GFF3 output by identity
genome gmap gene prediction written 1 day ago by karthic • 100 • updated 1 day ago by Juke34 • 4.8k
2
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95
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What are the best intron splice finder tools?
annotation gene prediction intron eukaryotes written 13 days ago by DNAlias • 10
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1
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161
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5 follow
1
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Alignng RNAseq data for gene prediction
gene prediction rna-seq written 4 weeks ago by karthic • 100 • updated 29 days ago by liorglic • 340
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114
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Any new recommended protocol for gene prediction, if you have isoseq data??
isoseq gene prediction pacbio rna-seq written 4 weeks ago by karthic • 100
3
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1
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163
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1
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Differences between "gene prediction" vs. "transcript reconstruction"
assembly gene prediction alignment rna-seq written 4 months ago by ljason2020 • 0 • updated 4 months ago by lieven.sterck ♦ 8.7k
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148
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EvidenceModeler # Error, cannot write
gene prediction evm written 5 months ago by ashaneev07 • 20
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403
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Less and less genes predicted with each iteration of SNAP/MAKER
annotation gene prediction snap genomics maker written 7 months ago by mrmrwinter • 0
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1
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451
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1
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Counting CDS's in Maker output
annotation gene prediction maker est cds written 7 months ago by mrmrwinter • 0 • updated 7 months ago by Juke34 • 4.8k
3
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2
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154
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2
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Which format to download ESTs for annotation with MAKER?
genome annotation gene prediction written 8 months ago by mrmrwinter • 0 • updated 8 months ago by Juke34 • 4.8k
3
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1
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562
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5 follow
1
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Hard-masked or soft-masked genome
repeatmasking gene prediction written 9 months ago by bioinf2305 • 10 • updated 9 months ago by lieven.sterck ♦ 8.7k
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219
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SNAP skipping training genes identified on minus strand
gene prediction snap minus strand written 9 months ago by bioinf2305 • 10
1
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0
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371
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Segmentation fault (core dumped) #augustus
augustus assembly gene prediction software written 12 months ago by ashaneev07 • 20 • updated 11 months ago by Biostar ♦♦ 20
4
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1
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648
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Augustus and SNAP training in Maker-p pipeline
genome annotation gene prediction makerp written 12 months ago by ashaneev07 • 20 • updated 12 months ago by lieven.sterck ♦ 8.7k
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509
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Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 12 months ago by mhfk2901 • 10
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377
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Eukaryotic gene annotation on gene predictions
annotation gene prediction eukaryotic written 14 months ago by predeus • 1.4k • updated 13 months ago by Biostar ♦♦ 20
1
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848
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Augustus Installation error
augustus gene prediction installation error written 15 months ago by ashaneev07 • 20 • updated 15 months ago by Philipp Bayer ♦ 6.8k
8
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1
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674
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6 follow
1
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 17 months ago by BioinformaticsLad • 160 • updated 17 months ago by predeus • 1.4k
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3
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6 follow
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Tool for Phage/Virus gene prediction and annotation
prokaryotes gene prediction phages gene annotation written 19 months ago by DanielC • 130 • updated 19 months ago by Joe ♦ 18k
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1
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2.4k
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1
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GeneMark-ES exits with "error, file not found: info/training.fna"
software error gene prediction genemark written 3.3 years ago by gauravdube007 • 0 • updated 20 months ago by victorcana1991 • 0
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1.0k
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1
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Peculiar orthologue quality divergence in Ensembl
ensembl gene prediction written 5.5 years ago by cdsouthan • 1.8k • updated 21 months ago by Biostar ♦♦ 20
1
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539
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Promoter prediction - most probable
act gene prediction promoter prediction written 24 months ago by Mimmi Ahlmén • 20
0
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928
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augustus Bam2hints program creates an empty .gff file
augustus ab initio gene prediction genome analysis written 2.0 years ago by freddiejung • 30
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695
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1
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Augustus Gene Frequency and Gene Names (Using BRAKER Pipeline)
augustus gene prediction braker written 2.1 years ago by isu2017 • 0
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1
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2.1k
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1
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Parsing augustus output
genome annotation gene prediction written 3.4 years ago by #### • 210 • updated 2.4 years ago by opplatek • 40
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486
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Use normalised reads for HISAT2/Braker1
gene prediction braker normalisation hisat2 written 2.4 years ago by ersgupta • 0
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1.1k
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Augustus Segmentation fault error message
augustus annotation gene prediction written 2.5 years ago by mss • 30 • updated 2.5 years ago by RamRS ♦ 30k
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689
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What tools to compare 3 sets of predicted protein (gene) sequences
gene prediction comparative genomics written 2.6 years ago by ngs_new_user • 0
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809
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1
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How to identify gene list present in Whole genome sequencing data?
gene prediction samtools whole genome sequencing written 2.6 years ago by mail2steff • 60 • updated 2.6 years ago by JC ♦ 11k
1
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genemark-es gene-finding with reference and annotation
assembly gene prediction dna-seq written 2.7 years ago by from the mountains • 110 • updated 2.7 years ago by lieven.sterck ♦ 8.7k
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886
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gene predicted by GeneWise
genewise gene prediction intron written 2.7 years ago by xiachujing • 0
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