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Trouble using get_raw() function in crossmeta R package to extract GEO data for differential expression analysis
crossmeta R meta-analysis gene-expression written 7 days ago by gggdddcrossmeta • 0 • updated 7 days ago by RamRS ♦ 27k
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Normalize gene expression data between 0 and 1
gene-expression written 7 days ago by m.taheri • 30
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Tool: TidyWrappers : an R package to deal with an object tbl
gene-expression R chip-seq wrappers rna-seq tool written 25 days ago by Chirag Parsania • 1.8k
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RNA-Seq Time Course Gene Expression dataset
gene-expression rna-seq written 8 weeks ago by donnieDarko • 0
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RMA Transformed Data: How to Determine Low/High Expression
R kaplan-meier gene-expression survival-analysis written 3 months ago by menon_ankita • 30
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Please Recommend Potential Graphs to Use For Gene Expression Survival Analysis
R kaplan-meier gene-expression survival-analysis written 3 months ago by menon_ankita • 30 • updated 3 months ago by dsull • 1.2k
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Cox Regression Survival Analysis with Only Tumor Data?
cox-regression survival-analysis gene-expression R written 3 months ago by menon_ankita • 30 • updated 3 months ago by dsull • 1.2k
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Cox in R: Receiving Strange Data, Please Help Interpret
cox-regression R gene-expression survival-analysis written 3 months ago by menon_ankita • 30 • updated 3 months ago by Kevin Blighe ♦ 59k
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Clustering tissues using gene expression data
gene-expression clustering written 7 months ago by Natasha • 40 • updated 4 months ago by Biostar ♦♦ 20
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How To Get The Gene Name Interactively In A R Plot
R visualization gene-expression plot written 7.0 years ago by Tky • 1000 • updated 4 months ago by Biostar ♦♦ 20
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What kind of analysis is practically done on GSE data files?
gse gene-expression written 6 months ago by shahdhruv7 • 0 • updated 6 months ago by Michael Dondrup ♦ 47k
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Normalizing raw data from Affymetrix expression microarrays
rma gene-expression cel written 7 months ago by Natasha • 40 • updated 7 months ago by ATpoint ♦ 34k
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Processing gene expression data
gene-expression written 7 months ago by Natasha • 40 • updated 7 months ago by c.chakraborty • 160
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Finding speaman's rho correlation matrix
tissue spearman correlation gene-expression written 8 months ago by Natasha • 40
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Find tissues that are functionally related
functionally-related tissue gene-expression written 8 months ago by Natasha • 40 • updated 8 months ago by Biostar ♦♦ 20
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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 10 months ago by Jurat Shahidin • 80
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what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 11 months ago by Jurat Shahidin • 80
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Any strategy to find out the reason of having unusual Coefficient of Variation (CV) for gene expression data?
cv microarray error gene-expression written 11 months ago by Jurat Shahidin • 80
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How to correctly filer out gene expression matrix by measuring Pearson correlation coefficients?
limma microarray gene-expression written 11 months ago by Jurat Shahidin • 80
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Can use log(CPM) of Pairwise comparison as expression level?
rna-seq edger gene-expression written 11 months ago by star • 230
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Differential gene expression analysis of real-valued expression data of genes and individuals
rna gene-expression gen-expression rna-seq written 11 months ago by Davide Chicco • 110 • updated 11 months ago by h.mon ♦ 29k
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How To Calculate The Gene Expression Level Based On Rna-Seq Experiment In Encode For Protein Coding Gene In Gencode
gene-expression rna-seq written 6.6 years ago by Michael Z • 0 • updated 13 months ago by Biostar ♦♦ 20
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Getting The Cdf Files For Some Chip
gene-expression written 7.3 years ago by mtyler.jason • 110 • updated 19 months ago by Biostar ♦♦ 20
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 21 months ago by lkianmehr • 30 • updated 21 months ago by genomax ♦ 83k
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What is the point of standardizing each gene in gene expression data?
standardization gene-expression written 2.7 years ago by ebrudermanver • 60 • updated 2.7 years ago by theobroma22 • 1.1k
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Weighted network (WGCNA) and Hive plot. Too many edges?
wgcna network gene-expression rna-seq hive plot written 3.3 years ago by O.rka • 170
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Help to understand some terms
gene-expression rna-seq written 3.4 years ago by yuvaltechnion • 0 • updated 3.4 years ago by Lars Juhl Jensen ♦ 11k
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Is "Ectopic Expression" too much or too little expression of a gene?
mouse hox-genes gene-expression devevlopment written 3.4 years ago by miaowzai • 210
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What are some robust correlation measures for network analysis?
network correlation gene-expression robust written 3.5 years ago by jolespin • 130
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Find details of co-variate which has effect on gene expression level using edgeR and DESeq2
R deseq2 rna-seq edger gene-expression written 3.7 years ago by star • 230
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