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2
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93
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Can use log(CPM) of Pairwise comparison as expression level?
rna-seq edger gene-expression written 11 days ago by star • 150
1
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1
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112
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1
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Differential gene expression analysis of real-valued expression data of genes and individuals
rna gene-expression gen-expression rna-seq written 15 days ago by Davide Chicco • 80 • updated 14 days ago by h.mon ♦ 25k
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3
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3
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How To Calculate The Gene Expression Level Based On Rna-Seq Experiment In Encode For Protein Coding Gene In Gencode
gene-expression rna-seq written 5.6 years ago by Michael Z • 0 • updated 9 weeks ago by Biostar ♦♦ 20
0
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1
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2.1k
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1
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Getting The Cdf Files For Some Chip
gene-expression written 6.3 years ago by mtyler.jason • 110 • updated 7 months ago by Biostar ♦♦ 20
4
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1
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488
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1
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 9 months ago by lkianmehr • 30 • updated 9 months ago by genomax ♦ 68k
2
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2
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820
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2
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What is the point of standardizing each gene in gene expression data?
standardization gene-expression written 21 months ago by ebrudermanver • 50 • updated 21 months ago by theobroma22 • 1.1k
0
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0
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977
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0
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Weighted network (WGCNA) and Hive plot. Too many edges?
wgcna network gene-expression rna-seq hive plot written 2.4 years ago by O.rka • 110
4
votes
1
answer
718
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1
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Help to understand some terms
gene-expression rna-seq written 2.5 years ago by yuvaltechnion • 0 • updated 2.5 years ago by Lars Juhl Jensen ♦ 11k
1
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1
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1.1k
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1
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Is "Ectopic Expression" too much or too little expression of a gene?
mouse hox-genes gene-expression devevlopment written 2.5 years ago by miaowzai • 130
1
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0
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824
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0
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What are some robust correlation measures for network analysis?
network correlation gene-expression robust written 2.5 years ago by jolespin • 120
12
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3
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5.5k
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7 follow
3
answers
How To Get The Gene Name Interactively In A R Plot
R visualization gene-expression plot written 6.0 years ago by Tky • 990 • updated 2.7 years ago by benformatics • 870
0
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0
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846
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0
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Find details of co-variate which has effect on gene expression level using edgeR and DESeq2
R deseq2 rna-seq edger gene-expression written 2.8 years ago by star • 150
7
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2
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1.6k
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2
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RNA-Seq experiment has low fold change
gene-expression rna-seq gene-ontology written 2.8 years ago by rmf • 650
33
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6
answers
14k
views
21 follow
6
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How Do I Get Started Working With Rna-Seq Data
gene-expression rna-seq written 5.4 years ago by HNK • 120 • updated 3.4 years ago by dnaseiseq • 200
1
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1
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1.7k
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1
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Do Probesets Correspond To A Genelist In The David Functional Annotation Tool?
gene-expression probeset written 6.3 years ago by mtyler.jason • 110 • updated 3.5 years ago by Biostar ♦♦ 20
3
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3
answers
3.8k
views
3
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Calling differential gene expression in Time series
sequencing tool rna-seq gene-expression written 4.5 years ago by Opt • 40 • updated 3.7 years ago by pengchy • 410
0
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0
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1.1k
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0
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Suggestion Needed For Mirna Expression Data
gene-expression mirna written 6.7 years ago by ChIP • 500 • updated 4.0 years ago by Biostar ♦♦ 20
1
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1
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1.2k
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1
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What is the control level of activation in Paradigm?
mrna pathway gene-expression paradigm written 4.3 years ago by fbrundu • 280 • updated 4.0 years ago by ethan.kaufman • 360
1
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0
answers
1.5k
views
0
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How To Define How Much Useful A Microarray/Gene Expression Dataset Is For Predicting A Go Term
gene-expression microarray written 5.4 years ago by mtyler.jason • 110 • updated 4.1 years ago by Biostar ♦♦ 20
4
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2
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2.6k
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2
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Choosing A Baseline Set Of Genes For Go Enrichment Analysis
enrichment expression gene-expression written 6.2 years ago by Abhi • 1.5k • updated 4.3 years ago by Biostar ♦♦ 20
0
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0
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1.3k
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0
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Which data format for mRNA expression matrix is necessary to run pathway analysis with Paradigm?
pathway mrna gene-expression paradigm written 4.3 years ago by fbrundu • 280
0
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2
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1.7k
views
2
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Correlating Protein expression with gene Expression
fpkm next-gen rna-seq gsea gene-expression written 4.4 years ago by Ron • 950 • updated 4.4 years ago by andrew • 460
0
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0
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1.8k
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0
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Gene Expression Pam Classification Reproducibility Question
R classification gene-expression cancer written 5.2 years ago by Mattias Aine • 570 • updated 4.5 years ago by Biostar ♦♦ 20
4
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2
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3.3k
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2
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How To Build Co-Expression Networks?
bioinformatics gene-expression written 5.2 years ago by Alan R. Fachini • 20 • updated 4.6 years ago by Biostar ♦♦ 20
16
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1
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12k
views
10 follow
1
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the problem with rpkm (and tpm)
normalization next-gen gene-expression rna-seq written 4.7 years ago by user123456 • 140 • updated 4.7 years ago by Istvan Albert ♦♦ 80k
1
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1
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1.1k
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1
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Why are some gene symbols repeated for gene expression data?
gene-expression written 4.9 years ago by chengzhao41 • 90 • updated 4.9 years ago by Charles Warden ♦ 6.8k
36
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6
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15k
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14 follow
6
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How Can We Get Tissue Specific Genes?
gene-expression written 5.4 years ago by Diwan • 560 • updated 5.1 years ago by Alex Reynolds ♦ 28k
0
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0
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1.6k
views
0
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Searching Annotation For Microarray Gene Expression Data.
geo R bioconductor gene-expression annotation written 5.2 years ago by ahaswer • 150
5
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1
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8.7k
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5 follow
1
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Mapping Between Affymetrix Features To Genes
gene-expression affymetrix microarray written 5.2 years ago by chengzhao41 • 90 • updated 5.2 years ago by Neilfws ♦ 48k
2
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1
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1.5k
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1
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Classify Genes As Expressed Or Not Expressed
classification gene-expression statistics written 5.2 years ago by predeus • 1.1k • updated 5.2 years ago by xb • 400
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