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Clustering tissues using gene expression data
gene-expression clustering written 3 months ago by Natasha • 40 • updated 5 days ago by Biostar ♦♦ 20
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9 follow
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How To Get The Gene Name Interactively In A R Plot
R visualization gene-expression plot written 6.6 years ago by Tky • 1000 • updated 20 days ago by Biostar ♦♦ 20
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What kind of analysis is practically done on GSE data files?
gse gene-expression written 9 weeks ago by shahdhruv7 • 0 • updated 9 weeks ago by Michael Dondrup ♦ 47k
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Normalizing raw data from Affymetrix expression microarrays
rma gene-expression cel written 3 months ago by Natasha • 40 • updated 3 months ago by ATpoint ♦ 28k
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Processing gene expression data
gene-expression written 3 months ago by Natasha • 40 • updated 3 months ago by c.chakraborty • 160
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172
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Finding speaman's rho correlation matrix
tissue spearman correlation gene-expression written 4 months ago by Natasha • 40
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Find tissues that are functionally related
functionally-related tissue gene-expression written 5 months ago by Natasha • 40 • updated 4 months ago by Biostar ♦♦ 20
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How to quantify positive and negative correlated genes from gene expression data?
gene R correlation gene-expression filtering written 6 months ago by Jurat Shahidin • 80
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what is the strategy to set threshold value for filtering gene expression matrix?
gene-expression filtering written 7 months ago by Jurat Shahidin • 80
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5 follow
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Any strategy to find out the reason of having unusual Coefficient of Variation (CV) for gene expression data?
cv microarray error gene-expression written 7 months ago by Jurat Shahidin • 80
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How to correctly filer out gene expression matrix by measuring Pearson correlation coefficients?
limma microarray gene-expression written 7 months ago by Jurat Shahidin • 80
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Can use log(CPM) of Pairwise comparison as expression level?
rna-seq edger gene-expression written 7 months ago by star • 200
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Differential gene expression analysis of real-valued expression data of genes and individuals
rna gene-expression gen-expression rna-seq written 8 months ago by Davide Chicco • 110 • updated 8 months ago by h.mon ♦ 29k
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How To Calculate The Gene Expression Level Based On Rna-Seq Experiment In Encode For Protein Coding Gene In Gencode
gene-expression rna-seq written 6.2 years ago by Michael Z • 0 • updated 9 months ago by Biostar ♦♦ 20
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Getting The Cdf Files For Some Chip
gene-expression written 7.0 years ago by mtyler.jason • 110 • updated 15 months ago by Biostar ♦♦ 20
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 17 months ago by lkianmehr • 30 • updated 17 months ago by genomax ♦ 77k
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What is the point of standardizing each gene in gene expression data?
standardization gene-expression written 2.4 years ago by ebrudermanver • 60 • updated 2.4 years ago by theobroma22 • 1.1k
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Weighted network (WGCNA) and Hive plot. Too many edges?
wgcna network gene-expression rna-seq hive plot written 3.0 years ago by O.rka • 160
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Help to understand some terms
gene-expression rna-seq written 3.1 years ago by yuvaltechnion • 0 • updated 3.1 years ago by Lars Juhl Jensen ♦ 11k
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Is "Ectopic Expression" too much or too little expression of a gene?
mouse hox-genes gene-expression devevlopment written 3.1 years ago by miaowzai • 210
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What are some robust correlation measures for network analysis?
network correlation gene-expression robust written 3.2 years ago by jolespin • 130
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Find details of co-variate which has effect on gene expression level using edgeR and DESeq2
R deseq2 rna-seq edger gene-expression written 3.4 years ago by star • 200
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RNA-Seq experiment has low fold change
gene-expression rna-seq gene-ontology written 3.5 years ago by rmf • 770
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21 follow
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How Do I Get Started Working With Rna-Seq Data
gene-expression rna-seq written 6.0 years ago by HNK • 120 • updated 4.0 years ago by dnaseiseq • 200
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Do Probesets Correspond To A Genelist In The David Functional Annotation Tool?
gene-expression probeset written 6.9 years ago by mtyler.jason • 110 • updated 4.1 years ago by Biostar ♦♦ 20
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Calling differential gene expression in Time series
sequencing tool rna-seq gene-expression written 5.1 years ago by Opt • 40 • updated 4.4 years ago by pengchy • 410
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Suggestion Needed For Mirna Expression Data
gene-expression mirna written 7.4 years ago by ChIP • 550 • updated 4.7 years ago by Biostar ♦♦ 20
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What is the control level of activation in Paradigm?
mrna pathway gene-expression paradigm written 4.9 years ago by fbrundu • 290 • updated 4.7 years ago by ethan.kaufman • 360
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How To Define How Much Useful A Microarray/Gene Expression Dataset Is For Predicting A Go Term
gene-expression microarray written 6.1 years ago by mtyler.jason • 110 • updated 4.7 years ago by Biostar ♦♦ 20
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Choosing A Baseline Set Of Genes For Go Enrichment Analysis
enrichment expression gene-expression written 6.8 years ago by Abhi • 1.5k • updated 4.9 years ago by Biostar ♦♦ 20
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