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About gene id

gene-id written 5.6 years ago by ravinsit06 • 10 • updated 5.6 years ago by Michael Dondrup ♦ 48k

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Recent Replies

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Hi I am trying to normalize my count data to do GSEA. these error come up: what is the solution...
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Thanks ATpoin This worked great
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There are a few common packages with the `select` function, so try to explicitly state the correc...
C: Segmentation fault (core dumped) error with bigWigAverageOverBed by camelest • 10
Thank you for your help. So it seems that there is something wrong in Chr column with my BED fil...
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Mutation data for all samples for a particular cohort (LUSC, BRCA, *et cetera*) is availalble in ...
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That looks like a pretty unusual bed file, where the chromosomes do not look formatted correctly,...
A: scale free topology in WGCNA by mrashad • 50
Honestly, it is the first time for me to use WGCNA and I used this tutorial as a guide: https://h...
A: GSEA from broad institute normalization method by Kevin Blighe ♦ 69k
Hi, As input to the Broad Institute's GSEA program, you should use any type of expression data t...
C: problems annotating genes using org.Hs.eg.db by Kevin Blighe ♦ 69k
What is the output of `str(gene_result)`?
C: Subseq a FASTA file by Explorer • 10
I am not sure about that. When I open it in a text editor, there are blocks of 60nt each while in...
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Yes. Change the command to this: wget -q -O - "https://eutils.ncbi.nlm.nih.gov/entrez/eutils...

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