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TAIR Gene Symbols

genomics genetics arabidopsis written 4 hours ago by pthom010 • 0 • updated 2 hours ago by Kevin Blighe ♦ 65k

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Recent Replies

C: correlation matrix for HTSeq data by Kevin Blighe ♦ 65k
Hi. You have already process the data, correct?; or you just have HTseq raw counts? > alos in...
C: correlation matrix for HTSeq data by rhasanvandj • 0
Hi Kevin Thanks for responding. Acctually I did not try because I have problem with how to make m...
C: How would I use BioPython to mass download some assemblies from NCBI? by Istvan Albert ♦♦ 85k
It would look like this with entrez direct: esearch -db assembly -query GCA_003031525 | elin...
C: How would I use BioPython to mass download some assemblies from NCBI? by Istvan Albert ♦♦ 85k
nice job tracking that down, looks like it does work in the end Usually one would not add the ve...
C: PCA plot, less points than samples by swbarnes2 ♦ 8.6k
Or, I'd doublecheck that your 12 samples really are 12 samples, and that you don't have a goof wh...
A: BWA-MEM - Improperly Paired Reads by swbarnes2 ♦ 8.6k
> converted the fastq files into unmapped bam using Picard FastqToSam, > and marked adapter...
C: How would I use BioPython to mass download some assemblies from NCBI? by genomax ♦ 90k
$ ./datasets assembly-descriptors taxon "Neophocaena asiaeorientalis" {"assemblies":[{"as...
C: BWA-MEM - Improperly Paired Reads by Istvan Albert ♦♦ 85k
Also look at these lines: 39590468 + 0 with mate mapped to a different chr 0 + 0 with ma...
C: BWA-MEM - Improperly Paired Reads by Istvan Albert ♦♦ 85k
check some of your improperly paired reads. Usually they get marked like that only if either one ...
A: Clarity for proper design model matrix with paired sample analysis by starick.marick • 0
Hi. I need to perform DGE between paired samples overtine. Did you reach a conclusion about the b...
C: How would I use BioPython to mass download some assemblies from NCBI? by genomax ♦ 90k
EDIT: Curiously using the fully qualified accession number (with version) works fine, so that err...
A: TCGA capture kits by markus.riester • 500
Yep, GDC provides that information. See here for a script to download it:https://github.com/lima1...

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