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<prev • 34 results • page 1 of 2 • next >
4
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7 follow
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ABySS run problems
de novo mpi abyss genome assembly written 2.3 years ago by Anand Rao • 250 • updated 2.3 years ago by benv • 710
5
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1
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1.4k
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6 follow
1
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Running ABySS at k-mer > 97
k-mer abyss genome assembly written 2.3 years ago by Anand Rao • 250 • updated 2.3 years ago by benv • 710
6
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0
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989
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0
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How can an assembled genome have Ns in it?
wgs ngs genome assembly written 3.0 years ago by predeus • 1.3k
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2
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1.5k
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2
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SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 2.3 years ago by Anand Rao • 250 • updated 19 months ago by ikangkim • 30
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2
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2.2k
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2
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Is BUSCO really better than CEGMA for genome assembly quality evaluation?
cegma busco genome assembly written 23 months ago by shelkmike • 130 • updated 21 months ago by h.mon ♦ 28k
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393
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Assemble genomes from different sequencing platforms
genome assembly written 20 months ago by Elizabeth • 20 • updated 20 months ago by Damian Kao ♦ 15k
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3
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2.4k
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3
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Hardware Recommendations: 1 Terabyte of RAM?
hardware genome assembly written 4.5 years ago by mossmatters • 90 • updated 4.5 years ago by h.mon ♦ 28k
4
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1
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1.8k
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1
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Canu: failed with exit code 134
canu exit code 134 pacbio failed genome assembly written 2.5 years ago by cristian • 240
4
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1
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913
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1
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REsequencing Genome Assembly and Functional Gene annotation workflow?
ngs gene annotation resequencing genome assembly written 2.4 years ago by mhmtgenc85 • 40 • updated 2.4 years ago by vmicrobio • 240
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A5 pipeline begin and end
assembler a5 pipeline genome assembly written 2.3 years ago by Anand Rao • 250
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0
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742
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0
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Ran dipSpades for a diploid fungus genome -- now what?
dipspades diploid genome assembly written 2.2 years ago by Lina F • 160 • updated 8 months ago by msobol • 20
0
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1
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421
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1
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Improvement of genome assembly using illumina contigs and nanopore reads
illumina nanopore scaffolding genome assembly written 5 months ago by KG • 10 • updated 5 months ago by h.mon ♦ 28k
1
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613
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1
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How denovo assemblers handle N's in reads?
genome assembly written 2.8 years ago by saranpons3 • 70 • updated 2.8 years ago by Brian Bushnell ♦ 17k
0
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0
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583
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Scaffolder with better performance specs
assembly improvement scaffolding genome assembly written 2.7 years ago by Anand Rao • 250
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1
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Polishing PacBio assembly : The ideal coverage for higly polymorphic species
polishing busco pacbio genome assembly written 2.7 years ago by Rox • 1.1k
0
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1
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578
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1
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How many short-reads are enough to do a valid bacterial genome assembly using Velvet and to perform a good annotation?
genome assembly written 2.2 years ago by bioinformatics_bel • 20 • updated 2.1 years ago by Kevin Blighe ♦ 52k
3
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1
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710
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1
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Finding and plotting gaps in denovo assembly in R
gaps R genome assembly written 20 months ago by alslonik • 120 • updated 20 months ago by Sean Davis ♦ 25k
3
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1
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778
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1
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Questions about de novo genome assembly from mixed DNA samples
mixed dna samples hybrid reads genome assembly written 18 months ago by niuyw • 30 • updated 18 months ago by lieven.sterck ♦ 6.4k
0
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0
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335
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0
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Masking short sequences between gaps in genome assembly
masking genome assembly written 16 months ago by pbigbig • 200
0
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1
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289
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1
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Genome structural annotation (augustus)
augsutus gene annotation genome assembly written 10 months ago by SP • 250 • updated 10 months ago by Kay • 0
2
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1
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213
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1
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Identify AMR genes from WGS bacterial sequence
wgs bacteria amr genome assembly written 6 months ago by bioinforesearchquestions • 270 • updated 6 months ago by ctseto • 260
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89
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Genome assembly of pacbio reads with SMRT Link
pacbio hgap tool smrtlink genome assembly written 5 weeks ago by star715 • 0 • updated 5 weeks ago by Asaf ♦ 6.5k
0
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1.3k
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SOAPdenovo contig parameters
illumina soapdenovo2 genome assembly written 5.4 years ago by AW • 350 • updated 5.3 years ago by Biostar ♦♦ 20
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1
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How do denovo genome/transcriptome assemblers treat ambiguous bases?
transcriptome assembly ngs denovo genome assembly written 5.1 years ago by Rohit • 1.4k
0
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UCSC ENCODE Broad histone modifications genome version
broad histone ucsc encode chip-seq genome assembly written 2.7 years ago by Rishikesh Lotke • 0
0
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0
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463
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gmsn.pl Matrix Creation Help
gmsn.pl genemark genome assembly written 2.3 years ago by zshores • 0 • updated 2.2 years ago by Biostar ♦♦ 20
0
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0
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525
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Gene loss in subsequent round of maker for fungal genome annotation
annotation genome assembly maker written 21 months ago by urmi208 • 30
0
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84
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Assemble multiple contigs to single
contigs microbial pacbio genome assembly written 5 weeks ago by star715 • 0
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1
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2.4k
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1
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Abyss genome assembly input
abyss genome assembly written 4.4 years ago by Damian Kao ♦ 15k • updated 4.4 years ago by Shaun Jackman • 420
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1.2k
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3
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Genome Assembly for a Beginner
genome assembly genome assembly written 3.9 years ago by ' • 260 • updated 3.9 years ago by poisonAlien • 2.8k
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