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Answer: how to create correlation matrix R
A: GISTIC 2.0 Segment CN
A: GISTIC 2.0 Segment CN
GISTIC 2.0 Segment CN
GISTIC 2.0 Segment CN
A: WGCNA: Relating Eigenmodules to Clinical Traits Returns Matrix of NAs
WGCNA: Relating Eigenmodules to Clinical Traits Returns Matrix of NAs
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Recent Replies
Comment: how to create correlation matrix R
by
satva72
• 0
great! thanks
Comment: BioInformatics, Software
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barslmn
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https://bio.tools/ is a great website indexing software used in bioinformatics.
Comment: BioInformatics, Software
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Pierre Lindenbaum
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This is just too broad. what did you find so far ?
Answer: How to calculate kinship matrix table from vcf file
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barslmn
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You can use the vcftools relatedness2 module. Which implements the method describes in the paper: https://academic.oup.com/bioinformatics/a…
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use AWK, change the header, body according to your needs... awk 'BEGIN {printf("##fileformat=VCFv4.2\n##INFO=<ID=END,Number=1,Type=I…
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It is the full result, there is only one lncRNA and one mRNA in Examp1, and the output file is just like web version reult
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convert the bed to vcf and use truvari.
Comment: bioinformatic analysis protocol performed by CD Genomics
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barslmn
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Mail their representative you talked with before or their support and ask them. There may not be a citable source. However, you can write t…
Comment: How to get a comperative result of 2 bed files?
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herh
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Actually, I am asked to use [truvari tool][1] but it works with vcf datasets. So, indeed I need a benchmarking measurement. One bed file is…
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Make sure that you have installed GATK in your system. Then follow the commands: For example, to generate `.dict` for `Homo_sapiens_assemb…
Comment: Precision-recall curve to compare metagenome classifiers to a gold standard - Is
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Hi, I'm trying to construct a similar curve using Kraken2 and Bracken report files. I'm trying to use the sklearn.metrics.precision_recall_…
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NikhilP
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Thanks I'll check that too. Actually I found a way to add weight column in the converted mcool file by using cooler package.
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Hi, I am facing the exact issue, have u had luck to solve it ? If yes, please share here. Thanks
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whether or not you should conduct a pooled analysis or a stratified analysis depends upon the ratio of between-group variance to within-gro…
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From what I understand, there is indeed a difference. vg surject recomputes the alignment produced with the reference used to build the gra…
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