Showing: genotypereset
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5
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1
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778
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Extracting certain columns from VCF file
vcf exome question vcftools genotype written 7 months ago by gradstudentNew10 • updated 13 days ago by zx87546.2k
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78
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4
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Attaching genotypes in the vcf files to individual ID
genotype written 8 months ago by Ana130 • updated 5 weeks ago by zx87546.2k
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164
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1
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Genotypes from different strand for same variant position
genotype strand written 6 weeks ago by first20 • updated 6 weeks ago by finswimmer9.0k
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588
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1
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Log-tranformation and GWAS
gwas transformation genotype logarithm statistics written 8 months ago by rednalf20 • updated 8 weeks ago by Biostar ♦♦ 20
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129
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Genotype input in matrix eqtl with dosage dataset
dosage genotype eqtl written 9 weeks ago by Molly_K40 • updated 9 weeks ago by devidjohn470
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5
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185
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9 follow
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Get genotype GT from multi-sample VCF (per chromosome)
vcf bcftools genotype subset written 9 weeks ago by zx87546.2k • updated 9 weeks ago by Pierre Lindenbaum116k
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1
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535
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1
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 13 months ago by J.F.Jiang730 • updated 9 weeks ago by zx87546.2k
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208
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5 follow
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compare and merge VCF files
vcf genotype written 9 weeks ago by qwzhang060160 • updated 9 weeks ago by berrytaylor560
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5 follow
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 23 months ago by Veera 90 • updated 9 weeks ago by Shicheng Guo7.3k
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168
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4
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164
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219
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1
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4
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181
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4/6 genotype in VCF
vcf variant calling genotype written 3 months ago by ajuiwl30 • updated 3 months ago by Pierre Lindenbaum116k
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1
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173
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1
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0
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1.3k
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Haplotype to Genotype data and linking to SNP
haplotype genotype snp myposts written 2.9 years ago by emmapead260 • updated 4 months ago by RamRS20k
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Ensembl Perl API - How to get genotype frequencies
ensembl genotype perl api genotype frequency written 3.4 years ago by entheologist3370 • updated 4 months ago by zx87546.2k
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238
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2
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161
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1000 genome project - difference between "0" and "0|0"
vcf genotype 1000 genome project written 5 months ago by mbk0asis410 • updated 5 months ago by Santosh Anand4.4k
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Get multiple snps coverage (allelic depth) from bam files
bam genotype sequencing written 3.2 years ago by MAPK1.3k • updated 5 months ago by le.marcorin0
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1
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241
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1
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1
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206
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Problem with allele number in vcf
vcf genotype allele number written 5 months ago by BAGeno110 • updated 5 months ago by aheinzel110
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236
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0
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1.2k
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VCF reference and alternative allele
vcf genome genotype sequencing written 2.4 years ago by onemoreuser10 • updated 6 months ago by waakurugu.akurugu0
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13 follow
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How to get sample names and genotype for SNP in multi-sample VCF file
gatk genotype snp written 11 months ago by hellbio340 • updated 6 months ago by Pierre Lindenbaum116k
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287
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0
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257
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6
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1.3k
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8 follow
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Extracting allele, Genotype from VCF file
vcf allele genotype tool written 8 months ago by sukhjindermultani850 • updated 7 months ago by finswimmer9.0k
1
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328
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GT (genotype information) in haploid organism has a value of 2 .
genotype snp written 9 months ago by shubhra.bhattacharya120 • updated 7 months ago by Biostar ♦♦ 20
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276
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