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update genotype calls with PyVCF
pyvcf genotypes written 6 weeks ago by biosol150 • updated 6 weeks ago by Pierre Lindenbaum132k
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Calculate LogR ratio and BAF from X and Y intensities
R baf genotypes intensity written 4.6 years ago by dp0b60 • updated 7 months ago by Biostar ♦♦ 20
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Phased genotypes data per population
hapmap population genotypes written 15 months ago by nastasia10 • updated 15 months ago by Kevin Blighe69k
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How to force missing values for genotype?
plink snp genotypes written 21 months ago by aritra9060 • updated 21 months ago by zx87549.9k
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update genotypes in vcf
vcf genotypes written 23 months ago by biosol150
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Negative values for imputed genotypes on X chromsomes in females
x chromosome X imputation genotypes written 2.5 years ago by Caragh 40 • updated 2.4 years ago by Biostar ♦♦ 20
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snps/indels with individual genotypes from 1000 genomes ftp site
vcf 1000 genomes genotypes ftp written 2.4 years ago by lait160 • updated 2.4 years ago by Kevin Blighe69k
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imputation and changing genotypes in Beagle and FImpute
beagle 4.0 fimpute imputation genotypes written 3.1 years ago by Wietje220 • updated 3.1 years ago by Shab86270
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compare genotypes in two vcf files
genotypes compare vcf files written 3.3 years ago by tarek.mohamed270 • updated 3.3 years ago by Biostar ♦♦ 20
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Fastphase cluster determination
cluster genotypes fastphase written 4.3 years ago by dp0b60 • updated 3.3 years ago by Gennady Khvorykh90
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Imputation of chromosome X using the Michigan imputation server
imputation genotypes chrx written 3.8 years ago by Floris Brenk970 • updated 3.6 years ago by chariko40
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Summarise genotypes in a VCF file
vcf genotypes written 5.4 years ago by Dave Tang190
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genotype concordance of minor allele carriers
snp plink concordance genotypes written 4.1 years ago by auraf8520 • updated 4.1 years ago by Biostar ♦♦ 20
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Is it good practice to convert lowest quality genotyes to missing?
vcf qc genotypes written 4.8 years ago by William4.7k • updated 4.8 years ago by Zev.Kronenberg11k
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VCF to genotype file of specific format
vcf awk genotypes bash written 4.9 years ago by David.shaw10 • updated 4.9 years ago by Shane McCarthy360
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Identifying subtypes within a known Genotype
viruses phylogentics genotypes written 5.5 years ago by zusman0 • updated 5.3 years ago by Biostar ♦♦ 20
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VCF genotype generator
vcf ngs genotypes written 5.6 years ago by vigprasud60 • updated 5.4 years ago by Len Trigg1.5k
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Explanation on genotypes notations
genotypes written 5.8 years ago by MAPK1.7k • updated 5.8 years ago by rbagnall1.7k
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Individual genotypes for the HapMap (HapMap and 1000G) samples
hapmap 1000g genotypes snp matrix written 6.5 years ago by Jimbou820 • updated 6.4 years ago by Biostar ♦♦ 20
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