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<prev • 252 results • page 1 of 9 • next >
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100
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Seeks good way to convert GB_LIST to SYMBOL
geo written 10 days ago by MatthewP • 390
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1
answer
73
views
1
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How to customize the attibutes of geo datasets?
ncbi geo written 14 days ago by changxu.fan • 30 • updated 14 days ago by Strand NGS • 0
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1
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123
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1
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Is there a need for background correction and substitution of duplicates with the mean when we use the getGEO function of R in microarray analysis?
geo R microarray analysis written 21 days ago by Sib • 20
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5.4k
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81 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 15 months ago by Kevin Blighe ♦ 53k • updated 29 days ago by kartikayprasad • 10
3
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1
answer
181
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1
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After differential expression analysis if we use gene symbols for further analysis we lose some DEGs. Is it ok?
geo differential expression analysis written 5 weeks ago by Sib • 20
221
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8
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101k
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197 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.4 years ago by Obi Griffith ♦ 18k • updated 5 weeks ago by Darill • 40
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2
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1.3k
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2
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Program to find genes up/down-regulated by a given gene
geo gene downregulated upregulated bioinformatics written 5.0 years ago by c_u • 160
2
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1
answer
95
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1
answer
Removing batch effect from GEO database
geo effect batch written 7 weeks ago by eric.palanques • 10 • updated 7 weeks ago by Kevin Blighe ♦ 53k
1
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1
answer
362
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1
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How to extract data from GEO datasets using GEOparse?
geo python geoparse rnaseq written 4 months ago by maya123z • 30 • updated 8 weeks ago by ichbinlynn93 • 10
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0
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148
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0
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NCBI GEO: Empty FTP directory!
geo ncbi written 10 weeks ago by mirzaienahal • 0
1
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1
answer
153
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1
answer
GEOquery with local files
ncbi R geoquery geo written 3 months ago by kmyers2 • 30 • updated 3 months ago by MatthewP • 390
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0
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113
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0
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fetch all relevant datasedts from GEO database
geo ncbi eutils written 3 months ago by APJ • 30
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254
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0
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Forum: publicly available data
geo sra forum arrayexpress written 3 months ago by Konstantinos Yeles • 100 • updated 3 months ago by h.mon ♦ 29k
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135
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Get single-cell technology used for certain sample
geo metadata gsm scrnaseq sra written 3 months ago by mariafirulevabio • 40
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1
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205
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1
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How to retrieve the genes associated to an RNA PAXgene gene expression dataset from GEO?
geo r-language rna rna-seq written 3 months ago by Davide Chicco • 110
1
vote
1
answer
190
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1
answer
Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 4 months ago by APJ • 30
0
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0
answers
166
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0
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gene annotation for GPL4134
geo annotation tutorial written 4 months ago by kankejia0703 • 0 • updated 4 months ago by ATpoint ♦ 28k
1
vote
0
answers
248
views
0
answers
Access to analysis to GEO dataset
geo restricted access parsing error geo2r written 5 months ago by Kim • 0 • updated 4 months ago by Biostar ♦♦ 20
19
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3
answers
5.3k
views
12 follow
3
answers
Get Sra Ids From Geo
geo ncbi written 5.8 years ago by tomislav.ilicic • 120 • updated 4 months ago by j.aryaman25 • 10
0
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1
answer
270
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1
answer
Parsing error when loading microarray data from GEO
geo matrix file parsing error microarray soft file written 5 months ago by Kim • 0
8
votes
1
answer
240
views
1
answer
How to know expression matrix on GEO is normalized or not?
geo limma written 5 months ago by MatthewP • 390 • updated 5 months ago by jared.andrews07 • 4.3k
1
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0
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244
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0
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Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GEO as input?
geo deseq2 ion rna-seq written 5 months ago by MatthewP • 390
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0
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317
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0
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Extract multiple GSM expression values from multiple GEO file without pulling the whole GEO data to local computer
geo R written 5 months ago by chvbs2000 • 0
3
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1
answer
270
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1
answer
What is the way of getting deferentially expressed genes from Gene expression Omnibus?
gene geo degs written 6 months ago by Al - Mustanjid • 10 • updated 6 months ago by Kevin Blighe ♦ 53k
1
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0
answers
218
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0
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Too many fails converting gene SYMBOL to ENTREZID
geo microarray clusterprofiler written 6 months ago by MatthewP • 390
0
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0
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138
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0
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Problem for downloading Non-coding RNA from Gene Expression Omnibus (GEO)
geo non-coding rna written 6 months ago by modarzi • 110
3
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1
answer
260
views
1
answer
How to annotate GPL for GEO data byhand?
geo written 6 months ago by MatthewP • 390 • updated 6 months ago by Kevin Blighe ♦ 53k
2
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1
answer
238
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1
answer
Extract GEO for certain experiment type
geo gsm geo accession bioconductor written 6 months ago by mariafirulevabio • 40
3
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0
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484
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0
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Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray heatmap gene expression rna-seq tool written 6 months ago by alserg • 320
3
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2
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460
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2
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How to get the gene expression matrix from GEO while getGEO returns 0 features?
atacseq geo getgeo rna-seq getquery written 6 months ago by bioyas • 0 • updated 6 months ago by ATpoint ♦ 28k
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