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GEO Illumina HumanHT-12 V3.0 Series never include Raw Data?
geo microarray written 4.0 years ago by Tim D • 50 • updated 4 weeks ago by Kevin Blighe ♦ 56k
86
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0
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6.5k
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89 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 17 months ago by Kevin Blighe ♦ 56k • updated 5 weeks ago by svlachavas • 650
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0
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167
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Seeks good way to convert GB_LIST to SYMBOL
geo written 10 weeks ago by MatthewP • 410
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1
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129
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1
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How to customize the attibutes of geo datasets?
ncbi geo written 11 weeks ago by changxu.fan • 30 • updated 11 weeks ago by Strand NGS • 40
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1
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149
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1
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Is there a need for background correction and substitution of duplicates with the mean when we use the getGEO function of R in microarray analysis?
geo R microarray analysis written 12 weeks ago by Sib • 20
3
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1
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210
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1
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After differential expression analysis if we use gene symbols for further analysis we lose some DEGs. Is it ok?
geo differential expression analysis written 3 months ago by Sib • 20
225
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8
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105k
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198 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.6 years ago by Obi Griffith ♦ 18k • updated 3 months ago by Darill • 40
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2
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1.3k
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2
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Program to find genes up/down-regulated by a given gene
geo gene downregulated upregulated bioinformatics written 5.1 years ago by c_u • 200
2
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1
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132
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1
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Removing batch effect from GEO database
geo effect batch written 4 months ago by eric.palanques • 10 • updated 4 months ago by Kevin Blighe ♦ 56k
1
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1
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544
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1
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How to extract data from GEO datasets using GEOparse?
geo python geoparse rnaseq written 6 months ago by maya123z • 30 • updated 4 months ago by ichbinlynn93 • 10
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0
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189
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0
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NCBI GEO: Empty FTP directory!
geo ncbi written 4 months ago by mirzaienahal • 0
1
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1
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195
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1
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GEOquery with local files
ncbi R geoquery geo written 5 months ago by kmyers2 • 40 • updated 5 months ago by MatthewP • 410
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0
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133
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fetch all relevant datasedts from GEO database
geo ncbi eutils written 5 months ago by APJ • 30
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0
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280
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Forum: publicly available data
geo sra forum arrayexpress written 5 months ago by Konstantinos Yeles • 100 • updated 5 months ago by h.mon ♦ 29k
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167
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Get single-cell technology used for certain sample
geo metadata gsm scrnaseq sra written 5 months ago by mariafirulevabio • 40
0
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1
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234
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1
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How to retrieve the genes associated to an RNA PAXgene gene expression dataset from GEO?
geo r-language rna rna-seq written 6 months ago by Davide Chicco • 110
1
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1
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230
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1
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 6 months ago by APJ • 30
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0
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196
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0
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gene annotation for GPL4134
geo annotation tutorial written 6 months ago by kankejia0703 • 0 • updated 6 months ago by ATpoint ♦ 31k
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340
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0
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Access to analysis to GEO dataset
geo restricted access parsing error geo2r written 8 months ago by Kim • 0 • updated 7 months ago by Biostar ♦♦ 20
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3
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5.5k
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12 follow
3
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Get Sra Ids From Geo
geo ncbi written 6.0 years ago by tomislav.ilicic • 120 • updated 7 months ago by j.aryaman25 • 10
0
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1
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330
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1
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Parsing error when loading microarray data from GEO
geo matrix file parsing error microarray soft file written 7 months ago by Kim • 0
8
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1
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370
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1
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How to know expression matrix on GEO is normalized or not?
geo limma written 7 months ago by MatthewP • 410 • updated 7 months ago by jared.andrews07 ♦ 5.3k
1
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268
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0
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Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GEO as input?
geo deseq2 ion rna-seq written 7 months ago by MatthewP • 410
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0
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351
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Extract multiple GSM expression values from multiple GEO file without pulling the whole GEO data to local computer
geo R written 7 months ago by chvbs2000 • 0
3
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1
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310
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1
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What is the way of getting deferentially expressed genes from Gene expression Omnibus?
gene geo degs written 8 months ago by Al - Mustanjid • 10 • updated 8 months ago by Kevin Blighe ♦ 56k
1
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246
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Too many fails converting gene SYMBOL to ENTREZID
geo microarray clusterprofiler written 8 months ago by MatthewP • 410
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0
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153
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Problem for downloading Non-coding RNA from Gene Expression Omnibus (GEO)
geo non-coding rna written 8 months ago by modarzi • 110
3
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1
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350
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1
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How to annotate GPL for GEO data byhand?
geo written 8 months ago by MatthewP • 410 • updated 8 months ago by Kevin Blighe ♦ 56k
2
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1
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270
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1
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Extract GEO for certain experiment type
geo gsm geo accession bioconductor written 8 months ago by mariafirulevabio • 40
3
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590
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0
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Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray heatmap gene expression rna-seq tool written 8 months ago by alserg • 430
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