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56
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RMA normalisation for Illumina micro array data
geo illumina micro array normalisation R written 8 days ago by fawazfebin • 100
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47
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Comparing Many Bed Files from GEO
geo bed chip-seq atac-seq meta-analysis written 9 days ago by cthangav • 0
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67
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How many GSExxx used for analyse
geo microarray written 9 days ago by cagdas • 10
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97
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Access metadata in GEO expression datasets
geo R gene expression written 11 days ago by priya.bmg • 0
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8 follow
1
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How to export subset of metadata and expression data from BioConductor GEOquery?
geo R bioconductor written 6.1 years ago by William • 4.7k • updated 4 weeks ago by Biostar ♦♦ 20
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5 follow
1
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series_matrix.txt in GEO are they always the normalized values?
geo series_matrix.txt written 2.3 years ago by Leite • 1.1k • updated 6 weeks ago by linouhao • 0
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130
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Geo2R Error after "Display first 250 results"
geo parsing error geo2r written 11 weeks ago by kaminoyona38 • 0
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154
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How to properly analyze following GEO DataSets
geo R bioconductor rna-seq written 12 weeks ago by arjuncsubra • 0
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196
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1
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Preparing GSE data for DESeq2 Analysis
geo deseq2 rna-seq written 3 months ago by thewisechineseguru • 0 • updated 3 months ago by jared.andrews07 ♦ 7.6k
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90
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how to download quality value files for csfasta in NCBI GEO datasets?
geo ncbi csfasta written 3 months ago by dahun73 • 10
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5 follow
3
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Getting sample information from GEO
geo ncbi written 3.4 years ago by Tom_L • 340 • updated 3 months ago by zhangsx.ivan • 0
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2
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138
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2
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Obtaining gene expression data from GEO
geo R microarray written 3 months ago by silsie645 • 20 • updated 3 months ago by patelk26 • 130
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183
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All Adjusted P values in GEO2R are equal to 1?
geo geo2r microarray written 3 months ago by jabbari.parnian • 0
2
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1
answer
582
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1
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DESeq2 on GEO dataset
geo R preprocessing deseq2 rna-seq written 6 months ago by hariprasadp.iitkgp • 0 • updated 4 months ago by Biostar ♦♦ 20
3
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1
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169
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1
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How to find out p-value format in chip-seq .bed files from GEO
geo pvalue chip-seq written 4 months ago by geenkgo • 0 • updated 4 months ago by igor ♦ 11k
6
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2
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170
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2
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What are these files?
geo bed rnaseq bedgraph written 4 months ago by ebs15242 • 10 • updated 4 months ago by jared.andrews07 ♦ 7.6k
103
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11k
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106 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 2.0 years ago by Kevin Blighe ♦ 66k • updated 4 months ago by Hamtaro • 10
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1
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183
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1
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extracting count matrix from GEO
geo written 4 months ago by lordoftheflower • 10 • updated 4 months ago by Kevin Blighe ♦ 66k
2
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1
answer
309
views
1
answer
GEO raw data download
geo methylation written 4 months ago by kwanghoon • 10 • updated 4 months ago by Kevin Blighe ♦ 66k
2
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238
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Get GEO microarray probe sequences by GPL ID
geo microarray gene expression omnibus written 4 months ago by predeus • 1.4k
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205
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How to download/save sample table presented at GEO2R
geo R geo2r written 4 months ago by archisman • 0
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127
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Downloading data onto R STUDIO
geo R tcga written 4 months ago by silsie645 • 20
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1
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163
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1
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Drop values in expression dataset python
geo python geoparse rna-seq written 5 months ago by highfillchad • 0 • updated 5 months ago by zorbax • 210
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1
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3.1k
views
1
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Analysing GSE datasets with GEOquery
geo R rna-seq written 3.4 years ago by IsmailM • 110 • updated 5 months ago by meteorickliu • 0
1
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223
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log2 RSEM data
geo galaxy rna-seq written 5 months ago by pbm11 • 0 • updated 5 months ago by RamRS ♦ 30k
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159
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gene expression data of scRNA-Seq
scrna-seq geo written 6 months ago by jabbari.parnian • 0
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137
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How to match CHIP information about genes to feature data from downloaded GEO dataset in R?
geo annotation microarray R written 6 months ago by lsbw • 0
1
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208
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0
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RNA-Seq data from GEO http vs SRA
geo rna-seq written 6 months ago by jabbari.parnian • 0
2
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1
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225
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1
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RNA-seq data for binary classification problem
geo R tcga classification rna-seq written 6 months ago by Abhi • 0 • updated 6 months ago by igor ♦ 11k
0
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1
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475
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1
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Download NCBI GEO dataset
geo gse rna-seq written 6 months ago by DataFanatic • 260 • updated 6 months ago by wm • 490
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