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<prev • 192 results • page 1 of 7 • next >
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How to handle Log2 Transformation that creates Nan Values
geo R microarray limma written 4 days ago by farzaneafzali • 0 • updated 4 days ago by WouterDeCoster ♦ 27k
1
vote
1
answer
102
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1
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Unit of gene expression in GEO2R
genome geo expression geo2r gene written 10 days ago by sina.majidian • 0 • updated 10 days ago by Kevin Blighe ♦ 17k
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1
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611
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1
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Tutorial: Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
geo R tutorial geoquery microarray written 3 months ago by martinguerrerog89 • 250 • updated 5 weeks ago by Sean Davis ♦ 24k
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84
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GEO2R Application and Uses
geo geo2r computational biology written 5 weeks ago by iamvarda9000 • 0
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1
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451
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Data mining for 300 genes from GEO
geo written 11 months ago by RT • 310 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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134
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1
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Differential Expression fro GEO Data
geo R limma rna-seq written 5 weeks ago by kalyanimeha • 20 • updated 5 weeks ago by Sean Davis ♦ 24k
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How to find up-regulated and down-regulated genes after GEO2R analysis?
geo up-regulated genes geo2r down-regulated written 6 weeks ago by deepak.k.choubey • 10
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Analysis of public RNA seq datasets
geo rna-seq differential expression pipelines written 7 weeks ago by fawazfebin • 0
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 13 months ago by predeus • 480
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3
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27 follow
3
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How To Download All Sra Samples At Once ?
geo sra download written 4.2 years ago by biorepine • 1.3k • updated 8 weeks ago by vr • 0
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how to find a particular GEO dataset or cohort in cBioportal and TCGA
geo R gdac tcga cbioportal written 9 weeks ago by CuriusScientist • 20
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2
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186
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Downloading multiple samples with GEO accesion numbers
geo microarray written 10 weeks ago by osieman52 • 10
160
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8
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142 follow
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 3.7 years ago by Obi Griffith ♦ 16k • updated 11 weeks ago by simplitia • 20
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162
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GEOquery and MethylAnalysis
geo R methylumi geoquery methylation written 12 weeks ago by alex.v.nesta • 0
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how to use "marray"and "lumi"packages
marray geo lumi written 4 months ago by a511512345 • 60 • updated 3 months ago by Biostar ♦♦ 20
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259
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Need help in downloading CEL files for multiple datasets from GEO in one go
geo R next-gen rna-seq python written 4 months ago by sndbt123 • 0
13
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3
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2.2k
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6 follow
3
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Geo Profiles: Downloading Profile Data.
geo ncbi api written 7.2 years ago by Pierre Lindenbaum ♦ 106k • updated 4 months ago by Biostar ♦♦ 20
2
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1
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292
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1
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Retrieving age metadata for GEO samples
geo metadata written 5 months ago by EverInEarnest • 30 • updated 4 months ago by Sean Davis ♦ 24k
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1.2k
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Tool: Digital Expression Explorer
geo tool rna-seq written 2.5 years ago by mark.ziemann • 1.0k
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347
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How to read large GEO series matrix file when getGEO fails
geo R microarray written 5 months ago by hzc363 • 0
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1
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1
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Error in retrieving SupportFiles from GEO
geo R geoquery geo2r written 23 months ago by 786 • 50 • updated 5 months ago by Sean Davis ♦ 24k
14
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1
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508
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6 follow
1
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build the expression matrix step by step from GEO raw data
geo written 5 months ago by a511512345 • 60 • updated 5 months ago by Kevin Blighe ♦ 17k
1
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2
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893
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2
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Accessing Expression Levels for Genes of Interest from GEO Experiments
geo fpkm rna rna-seq lncrna written 2.1 years ago by a.aiezza • 30 • updated 6 months ago by Biostar ♦♦ 20
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289
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GEO2R - significantly DEGs
geo geo2r deg written 6 months ago by hcv • 0
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1
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1
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Where to find DNase-seq and RNA-seq assays for various cancer lines?
genome geo dnase-seq rna-seq sequencing written 7 months ago by bhchiang • 0 • updated 7 months ago by jared.andrews07 • 680
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1
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372
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1
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Integrating microarray datasets from multiple series/studies
geo normalization microarray data integration written 7 months ago by lessismore • 470 • updated 7 months ago by theobroma22 • 1.1k
4
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3
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572
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5 follow
3
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Data retrieval from GEO
geo metadata microarray bulk download written 7 months ago by lessismore • 470 • updated 7 months ago by Leandro Lima • 880
3
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1
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424
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1
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GEO data preprocessing with fRMA, limma and sva packages
geo written 8 months ago by landscape95 • 130 • updated 8 months ago by lessismore • 470
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Why does submitting high-throughput sequence data to GEO from an Amazon EC2 instance produce the error "Could not read reply from control connection -- timed out" ?
geo ftp next-gen written 8 months ago by Daniel Gerlach • 20
3
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1
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5 follow
1
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Retrieving data from NCBI GEO and RNA-Seq Data Analysis
geo R normalization rna-seq count written 8 months ago by hkarakurt • 10 • updated 8 months ago by theobroma22 • 1.1k
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