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Preparing GSE data for DESeq2 Analysis
geo deseq2 rna-seq written 6 days ago by thewisechineseguru • 0 • updated 5 days ago by jared.andrews07 ♦ 6.4k
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34
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how to download quality value files for csfasta in NCBI GEO datasets?
geo ncbi csfasta written 6 days ago by dahun73 • 10
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5 follow
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Getting sample information from GEO
geo ncbi written 3.2 years ago by Tom_L • 320 • updated 7 days ago by zhangsx.ivan • 0
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2
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88
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2
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Obtaining gene expression data from GEO
geo R microarray written 25 days ago by silsie645 • 20 • updated 25 days ago by patelk26 • 130
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94
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All Adjusted P values in GEO2R are equal to 1?
geo geo2r microarray written 29 days ago by jabbari.parnian • 0
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1
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330
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DESeq2 on GEO dataset
geo R preprocessing deseq2 rna-seq written 3 months ago by hariprasadp.iitkgp • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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117
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How to find out p-value format in chip-seq .bed files from GEO
geo pvalue chip-seq written 5 weeks ago by geenkgo • 0 • updated 5 weeks ago by igor ♦ 11k
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2
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113
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2
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What are these files?
geo bed rnaseq bedgraph written 5 weeks ago by ebs15242 • 10 • updated 5 weeks ago by jared.andrews07 ♦ 6.4k
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102 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 21 months ago by Kevin Blighe ♦ 63k • updated 6 weeks ago by Hamtaro • 10
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112
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extracting count matrix from GEO
geo written 7 weeks ago by lordoftheflower • 10 • updated 7 weeks ago by Kevin Blighe ♦ 63k
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1
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144
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1
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GEO raw data download
geo methylation written 8 weeks ago by kwanghoon • 10 • updated 8 weeks ago by Kevin Blighe ♦ 63k
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167
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Get GEO microarray probe sequences by GPL ID
geo microarray gene expression omnibus written 8 weeks ago by predeus • 1.4k
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How to download/save sample table presented at GEO2R
geo R geo2r written 8 weeks ago by archisman • 0
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Downloading data onto R STUDIO
geo R tcga written 8 weeks ago by silsie645 • 20
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120
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Drop values in expression dataset python
geo python geoparse rna-seq written 10 weeks ago by highfillchad • 0 • updated 10 weeks ago by zorbax • 130
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2.8k
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Analysing GSE datasets with GEOquery
geo R rna-seq written 3.2 years ago by IsmailM • 110 • updated 10 weeks ago by meteorickliu • 0
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129
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log2 RSEM data
geo galaxy rna-seq written 10 weeks ago by pbm11 • 0 • updated 10 weeks ago by RamRS ♦ 28k
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129
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gene expression data of scRNA-Seq
scrna-seq geo written 3 months ago by jabbari.parnian • 0
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100
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How to match CHIP information about genes to feature data from downloaded GEO dataset in R?
geo annotation microarray R written 3 months ago by lsbw • 0
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148
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RNA-Seq data from GEO http vs SRA
geo rna-seq written 3 months ago by jabbari.parnian • 0
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1
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165
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1
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RNA-seq data for binary classification problem
geo R tcga classification rna-seq written 3 months ago by Abhi • 0 • updated 3 months ago by igor ♦ 11k
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1
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215
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1
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Download NCBI GEO dataset
geo gse rna-seq written 3 months ago by DataFanatic • 240 • updated 3 months ago by wm • 470
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ChIPSeq Analysis on GEO Fastq data on Galaxy
geo chip-seq written 4 months ago by mjdm • 0 • updated 4 months ago by genomax ♦ 87k
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GEO Illumina HumanHT-12 V3.0 Series never include Raw Data?
geo microarray written 4.4 years ago by Tim D • 60 • updated 5 months ago by Kevin Blighe ♦ 63k
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349
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Seeks good way to convert GB_LIST to SYMBOL
geo written 6 months ago by MatthewP • 680
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1
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192
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1
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How to customize the attibutes of geo datasets?
ncbi geo written 6 months ago by changxu.fan • 40 • updated 6 months ago by Strand NGS • 40
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213
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Is there a need for background correction and substitution of duplicates with the mean when we use the getGEO function of R in microarray analysis?
geo R microarray analysis written 7 months ago by Sib • 20
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287
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After differential expression analysis if we use gene symbols for further analysis we lose some DEGs. Is it ok?
geo differential expression analysis written 7 months ago by Sib • 20
232
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8
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111k
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201 follow
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.9 years ago by Obi Griffith ♦ 18k • updated 7 months ago by Chvatil • 40
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Program to find genes up/down-regulated by a given gene
geo gene downregulated upregulated bioinformatics written 5.5 years ago by c_u • 250
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