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4
votes
1
answer
354
views
1
answer
Normalizing Illumina fastq read-lengths from different GEO datasets
geo fastq rna-seq written 14 days ago by rbronste • 140
1
vote
2
answers
137
views
2
answers
Question on number of probes in CEL and SOFT from GEO
geo written 24 days ago by landscape95 • 70 • updated 24 days ago by theobroma22 • 880
0
votes
2
answers
149
views
2
answers
Downloading from GEO
geo written 24 days ago by landscape95 • 70 • updated 24 days ago by Santosh Anand • 2.8k
0
votes
1
answer
143
views
1
answer
Get mRNA, miRNA, lncRNA specific for probes
geo written 5 weeks ago by landscape95 • 70 • updated 5 weeks ago by Samuel Brady • 230
2
votes
1
answer
156
views
1
answer
Clinical data from GEO
geo written 6 weeks ago by landscape95 • 70 • updated 6 weeks ago by Istvan Albert ♦♦ 73k
0
votes
0
answers
117
views
0
answers
Combine .CEL files from RAW GEO compressed file into 1 matrix
geo written 6 weeks ago by landscape95 • 70
0
votes
1
answer
1.0k
views
1
answer
Expression data missing in a GEO study
geo bioconductor geoquery written 2.9 years ago by William • 3.9k • updated 7 weeks ago by vegard nygaard • 70
0
votes
1
answer
190
views
1
answer
Data mining for 300 genes from GEO
geo written 12 weeks ago by RT • 300 • updated 7 weeks ago by theobroma22 • 880
6
votes
1
answer
194
views
1
answer
How to know a RNA-seq is polyA or total-RNA-seq in GEO?
geo rna-seq written 10 weeks ago by bxia • 90 • updated 10 weeks ago by Devon Ryan ♦ 70k
0
votes
0
answers
175
views
0
answers
Analysing GSE datasets with GEOquery
geo R rna-seq written 10 weeks ago by IsmailM • 80
4
votes
2
answers
218
views
2
answers
Getting sample information from GEO
geo ncbi written 12 weeks ago by Tom_L • 190
0
votes
1
answer
157
views
1
answer
How to provide re-analysis link to previous dataset in GEO page
geo written 3 months ago by Shicheng Guo • 4.4k • updated 3 months ago by igor • 4.4k
7
votes
1
answer
223
views
1
answer
Extract Bibliographic Reference from GEO dataset using EFetch?
geo ncbi efetch written 3 months ago by Tom • 10 • updated 3 months ago by Santosh Anand • 2.8k
1
vote
0
answers
209
views
0
answers
Expression data preprocess and normalization
geo R bioconductor gse rna-seq written 3 months ago by hkarakurt • 0
2
votes
1
answer
212
views
1
answer
Downloading normalized data from GEO
geo normalization R written 3 months ago by Fereshteh • 2.7k • updated 3 months ago by mforde84 • 780
0
votes
1
answer
259
views
1
answer
GEOquery R Package Error: cannot open URL (http://)
geo R analysis microarray error written 4 months ago by jblack29 • 0 • updated 4 months ago by Santosh Anand • 2.8k
3
votes
1
answer
391
views
1
answer
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 4 months ago by predeus • 360 • updated 4 months ago by Gregor Sturm • 30
2
votes
0
answers
195
views
0
answers
eUtils and GEO database
geo ncbi eutils written 6 months ago by russhh • 2.6k • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
158
views
0
answers
From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 5 months ago by jiab • 10
0
votes
1
answer
206
views
1
answer
Cancer data for histone Chip-seq in human and mouse
geo sra cancer chip-seq histone written 5 months ago by Saad Khan • 310 • updated 5 months ago by Ben • 50
1
vote
1
answer
183
views
1
answer
Meta-analysis of Microarray datasets.
gene geo microarray meta-analysis written 5 months ago by biotechuos4 • 0 • updated 5 months ago by theobroma22 • 880
0
votes
0
answers
228
views
0
answers
How to filter GSE series which have normalized log ratios for experimental cases and normal controls?
geo gse log-ratio written 5 months ago by urwa • 0
6
votes
2
answers
522
views
2
answers
GEO study selection for analysis in R
geo R geo2r written 15 months ago by 786 • 50 • updated 5 months ago by ugandhar.ch1 • 10
136
votes
8
answers
49k
views
118 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 3.0 years ago by Obi Griffith ♦ 15k • updated 6 months ago by al-ash • 0
0
votes
0
answers
228
views
0
answers
GEO series (GSE) - Filtering series with both disease and control samples
geo filters gse written 6 months ago by urwa • 0
2
votes
1
answer
277
views
1
answer
remove NAs from exprs(gset)
geo exprs geo2r written 6 months ago by randalljellis • 70 • updated 6 months ago by Devon Ryan ♦ 70k
0
votes
0
answers
238
views
0
answers
Is it possible to use geometadb to extract sample age from a set of samples in GEO?
geo geometadb R written 6 months ago by Tom • 10
4
votes
2
answers
413
views
2
answers
NCBI: Parsing data nicely?
table data geo ncbi parsing written 6 months ago by Tom • 10 • updated 6 months ago by a.zielezinski ♦ 7.2k
2
votes
3
answers
440
views
6 follow
3
answers
Data repository for Whole Exome Sequencing
geo database wes written 8 months ago by Alejandro Jimenez Sanchez • 90
2
votes
0
answers
330
views
0
answers
Comparison of Affymetrix with other platforms
geo illumina bioconductor rna-seq affymetric written 7 months ago by 786 • 50
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