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<prev • 245 results • page 1 of 9 • next >
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53
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fetch all relevant datasedts from GEO database
geo ncbi eutils written 4 days ago by APJ • 20
73
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4.0k
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75 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 12 months ago by Kevin Blighe ♦ 50k
4
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155
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Forum: publicly available data
geo sra forum arrayexpress written 12 days ago by Konstantinos Yeles • 60 • updated 9 days ago by h.mon ♦ 27k
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80
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Get single-cell technology used for certain sample
geo metadata gsm scrnaseq sra written 14 days ago by mariafirulevabio • 40
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1
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140
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1
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How to retrieve the genes associated to an RNA PAXgene gene expression dataset from GEO?
geo r-language rna rna-seq written 19 days ago by Davide Chicco • 90
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76
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How to extract data from GEO datasets using GEOparse?
geo python geoparse rnaseq written 27 days ago by maya123z • 30
1
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1
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100
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1
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 4 weeks ago by APJ • 20
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97
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gene annotation for GPL4134
geo annotation tutorial written 5 weeks ago by kankejia0703 • 0 • updated 5 weeks ago by ATpoint ♦ 24k
1
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157
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Access to analysis to GEO dataset
geo restricted access parsing error geo2r written 11 weeks ago by Kim • 0 • updated 7 weeks ago by Biostar ♦♦ 20
20
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3
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5.1k
views
13 follow
3
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Get Sra Ids From Geo
geo ncbi written 5.5 years ago by tomislav.ilicic • 120 • updated 7 weeks ago by j.aryaman25 • 20
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1
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168
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1
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Parsing error when loading microarray data from GEO
geo matrix file parsing error microarray soft file written 7 weeks ago by Kim • 0
8
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1
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150
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1
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How to know expression matrix on GEO is normalized or not?
geo limma written 8 weeks ago by MatthewP • 260 • updated 8 weeks ago by jared.andrews07 • 3.4k
1
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176
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Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GEO as input?
geo deseq2 ion rna-seq written 9 weeks ago by MatthewP • 260
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253
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Extract multiple GSM expression values from multiple GEO file without pulling the whole GEO data to local computer
geo R written 10 weeks ago by chvbs2000 • 0
3
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1
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202
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1
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What is the way of getting deferentially expressed genes from Gene expression Omnibus?
gene geo degs written 12 weeks ago by Al - Mustanjid • 10 • updated 12 weeks ago by Kevin Blighe ♦ 50k
1
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149
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Too many fails converting gene SYMBOL to ENTREZID
geo microarray clusterprofiler written 3 months ago by MatthewP • 260
0
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0
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92
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0
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Problem for downloading Non-coding RNA from Gene Expression Omnibus (GEO)
geo non-coding rna written 3 months ago by modarzi • 80
3
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1
answer
138
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1
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How to annotate GPL for GEO data byhand?
geo written 3 months ago by MatthewP • 260 • updated 3 months ago by Kevin Blighe ♦ 50k
2
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1
answer
184
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1
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Extract GEO for certain experiment type
geo gsm geo accession bioconductor written 3 months ago by mariafirulevabio • 40
3
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0
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340
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Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray heatmap gene expression rna-seq tool written 3 months ago by alserg • 260
3
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2
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276
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2
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How to get the gene expression matrix from GEO while getGEO returns 0 features?
atacseq geo getgeo rna-seq getquery written 3 months ago by bioyas • 0 • updated 3 months ago by ATpoint ♦ 24k
2
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2
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218
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2
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How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
geo sra download-dataset rna-seq fasq.qz written 3 months ago by F. Golestan • 20 • updated 3 months ago by ATpoint ♦ 24k
3
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2
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500
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2
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Programmatic access to Sample Information from GEO via GSM or SRR number
geo written 9 months ago by seidel ♦ 6.8k • updated 3 months ago by Biostar ♦♦ 20
1
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1
answer
145
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1
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GEO differential expression analysis
geo R deg written 4 months ago by yehchan57 • 10 • updated 4 months ago by zephyr_falcon • 80
3
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1
answer
289
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6 follow
1
answer
How to create own SRAdb
geo sra sradb written 4 months ago by Deepak Tanwar • 4.0k • updated 4 months ago by Sean Davis ♦ 25k
6
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1
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285
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1
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Differentially expressed genes from expression table (RNAseq)
geo deg expression table rna-seq written 4 months ago by english.server • 160 • updated 4 months ago by ATpoint ♦ 24k
2
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1
answer
197
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6 follow
1
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How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 4 months ago by Helen • 30 • updated 4 months ago by predeus • 1.2k
14
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2
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4.1k
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12 follow
2
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.6 years ago by predeus • 1.2k • updated 4 months ago by Helen • 30
0
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1
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204
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1
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Using GEOquery to download multiple expression data series files and then combine
ncbi geo expression array rna-seq R written 5 months ago by kmyers2 • 20 • updated 5 months ago by Kevin Blighe ♦ 50k
2
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0
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251
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Download microarray data from GEO
geo microarray written 6 months ago by tolsma.joseph • 0
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