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6
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1
answer
122
views
1
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How to know a RNA-seq is polyA or total-RNA-seq in GEO?
geo rna-seq written 17 days ago by bxia • 80 • updated 17 days ago by Devon Ryan ♦ 68k
0
votes
0
answers
101
views
0
answers
Analysing GSE datasets with GEOquery
geo R rna-seq written 17 days ago by IsmailM • 80
0
votes
0
answers
103
views
0
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Data mining for 300 genes from GEO
geo written 28 days ago by RT • 290
4
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2
answers
154
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2
answers
Getting sample information from GEO
geo ncbi written 4 weeks ago by Tom_L • 180
0
votes
1
answer
98
views
1
answer
How to provide re-analysis link to previous dataset in GEO page
geo written 4 weeks ago by Shicheng Guo • 4.4k • updated 4 weeks ago by igor • 4.3k
7
votes
1
answer
184
views
1
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Extract Bibliographic Reference from GEO dataset using EFetch?
geo ncbi efetch written 6 weeks ago by Tom • 10 • updated 6 weeks ago by Santosh Anand • 2.3k
1
vote
0
answers
162
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0
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Expression data preprocess and normalization
geo R bioconductor gse rna-seq written 7 weeks ago by hkarakurt • 0
2
votes
1
answer
146
views
1
answer
Downloading normalized data from GEO
geo normalization R written 8 weeks ago by F • 2.6k • updated 8 weeks ago by mforde84 • 560
0
votes
1
answer
174
views
1
answer
GEOquery R Package Error: cannot open URL (http://)
geo R analysis microarray error written 10 weeks ago by jblack29 • 0 • updated 10 weeks ago by Santosh Anand • 2.3k
3
votes
1
answer
241
views
1
answer
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 12 weeks ago by predeus • 330 • updated 12 weeks ago by Gregor Sturm • 30
2
votes
0
answers
160
views
0
answers
eUtils and GEO database
geo ncbi eutils written 4 months ago by russhh • 2.4k • updated 12 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
123
views
0
answers
From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 3 months ago by jiab • 10
0
votes
1
answer
170
views
1
answer
Cancer data for histone Chip-seq in human and mouse
geo sra cancer chip-seq histone written 3 months ago by Saad Khan • 310 • updated 3 months ago by Ben • 40
1
vote
1
answer
146
views
1
answer
Meta-analysis of Microarray datasets.
gene geo microarray meta-analysis written 3 months ago by biotechuos4 • 0 • updated 3 months ago by theobroma22 • 690
0
votes
0
answers
198
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0
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How to filter GSE series which have normalized log ratios for experimental cases and normal controls?
geo gse log-ratio written 3 months ago by urwa • 0
6
votes
2
answers
488
views
2
answers
GEO study selection for analysis in R
geo R geo2r written 13 months ago by 786 • 50 • updated 4 months ago by ugandhar.ch1 • 10
127
votes
8
answers
46k
views
111 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 2.8 years ago by Obi Griffith ♦ 15k • updated 4 months ago by al-ash • 0
0
votes
0
answers
189
views
0
answers
GEO series (GSE) - Filtering series with both disease and control samples
geo filters gse written 4 months ago by urwa • 0
2
votes
1
answer
230
views
1
answer
remove NAs from exprs(gset)
geo exprs geo2r written 4 months ago by randalljellis • 70 • updated 4 months ago by Devon Ryan ♦ 68k
0
votes
0
answers
200
views
0
answers
Is it possible to use geometadb to extract sample age from a set of samples in GEO?
geo geometadb R written 4 months ago by Tom • 10
4
votes
2
answers
361
views
2
answers
NCBI: Parsing data nicely?
table data geo ncbi parsing written 4 months ago by Tom • 10 • updated 4 months ago by a.zielezinski ♦ 7.0k
2
votes
3
answers
390
views
6 follow
3
answers
Data repository for Whole Exome Sequencing
geo database wes written 6 months ago by Alejandro Jimenez Sanchez • 90
2
votes
0
answers
277
views
0
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Comparison of Affymetrix with other platforms
geo illumina bioconductor rna-seq affymetric written 5 months ago by 786 • 50
0
votes
0
answers
240
views
0
answers
GEO and CDF files
geo microarray affymetrix written 5 months ago by 786 • 50
4
votes
3
answers
453
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3
answers
Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 5 months ago by Tom • 10 • updated 5 months ago by mforde84 • 560
0
votes
1
answer
302
views
1
answer
Normalizing to housekeeper genes with microarray data
geo R microarray housekeeper gene normalization written 5 months ago by moonkinwen • 0 • updated 5 months ago by Lluís R. • 480
0
votes
0
answers
250
views
0
answers
Building a matrix of Profile Expression
geo R sra written 7 months ago by grecoandreauni • 0 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
289
views
0
answers
Get fastq/sra from ArrayExpress and/or GEO programmatically for specific organism/experiment type
geo arrayexpress fastq sra written 6 months ago by rioualen • 170
0
votes
0
answers
274
views
0
answers
How to get the sample sheet of methylation series/samples available on GEO ?
geo methylation rnbeads written 6 months ago by mohamed_refaat.1992 • 0
6
votes
1
answer
1.4k
views
1
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Download Geo Samples Table
geo written 4.2 years ago by Irsan • 6.3k • updated 6 months ago by Biostar ♦♦ 20
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