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GEO Accession transcriptome data comparison with custom gene expression sets
geo R deseq2 rna-seq transcriptome written 15 days ago by sujitsilas • 0
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145
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About GEO2R microarray analysis
geo array geo2r microarray written 5 weeks ago by pedramasadi21 • 0
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145
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expression density plot
geo gene expression omnibus rna-seq written 7 weeks ago by sindhujarajavelu • 0
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156
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Absence of significant values in the analyzes with GEO2R
geo expression limma written 7 weeks ago by RafaelMP • 110
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152
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froom S3 bucket to GEO
geo aws rna-seq publication written 8 weeks ago by gaia • 0
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161
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10Xv2 scRNA dataset SRR files return only R1, how to run cellranger ?
geo rna-seq sequencing written 9 weeks ago by jo.bac • 0 • updated 9 weeks ago by GenoMax ♦ 94k
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RMA normalisation for Illumina micro array data
geo illumina micro array normalisation R written 12 weeks ago by fawazfebin • 100
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130
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Comparing Many Bed Files from GEO
geo bed chip-seq atac-seq meta-analysis written 12 weeks ago by cthangav • 0
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197
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How many GSExxx used for analyse
geo microarray written 12 weeks ago by cagdas • 10
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Access metadata in GEO expression datasets
geo R gene expression written 3 months ago by priya.bmg • 0
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How to export subset of metadata and expression data from BioConductor GEOquery?
geo R bioconductor written 6.4 years ago by William • 4.7k • updated 3 months ago by Biostar ♦♦ 20
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5 follow
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series_matrix.txt in GEO are they always the normalized values?
geo series_matrix.txt written 2.5 years ago by Leite • 1.1k • updated 4 months ago by linouhao • 0
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216
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Geo2R Error after "Display first 250 results"
geo parsing error geo2r written 5 months ago by kaminoyona38 • 0
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How to properly analyze following GEO DataSets
geo R bioconductor rna-seq written 5 months ago by arjuncsubra • 0
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Preparing GSE data for DESeq2 Analysis
geo deseq2 rna-seq written 5 months ago by thewisechineseguru • 0 • updated 5 months ago by jared.andrews07 ♦ 8.3k
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how to download quality value files for csfasta in NCBI GEO datasets?
geo ncbi csfasta written 5 months ago by dahun73 • 10
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5 follow
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Getting sample information from GEO
geo ncbi written 3.7 years ago by Tom_L • 340 • updated 5 months ago by zhangsx.ivan • 0
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200
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Obtaining gene expression data from GEO
geo R microarray written 6 months ago by silsie645 • 20 • updated 6 months ago by patelk26 • 140
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All Adjusted P values in GEO2R are equal to 1?
geo geo2r microarray written 6 months ago by jabbari.parnian • 0
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DESeq2 on GEO dataset
geo R preprocessing deseq2 rna-seq written 8 months ago by hariprasadp.iitkgp • 0 • updated 6 months ago by Biostar ♦♦ 20
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How to find out p-value format in chip-seq .bed files from GEO
geo pvalue chip-seq written 6 months ago by geenkgo • 0 • updated 6 months ago by igor ♦ 12k
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What are these files?
geo bed rnaseq bedgraph written 6 months ago by ebs15242 • 10 • updated 6 months ago by jared.andrews07 ♦ 8.3k
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107 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 2.2 years ago by Kevin Blighe ♦ 69k • updated 7 months ago by Hamtaro • 10
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252
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extracting count matrix from GEO
geo written 7 months ago by lordoftheflower • 10 • updated 7 months ago by Kevin Blighe ♦ 69k
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499
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GEO raw data download
geo methylation written 7 months ago by kwanghoon • 10 • updated 7 months ago by Kevin Blighe ♦ 69k
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Get GEO microarray probe sequences by GPL ID
geo microarray gene expression omnibus written 7 months ago by predeus • 1.4k
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337
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How to download/save sample table presented at GEO2R
geo R geo2r written 7 months ago by archisman • 0
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170
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Downloading data onto R STUDIO
geo R tcga written 7 months ago by silsie645 • 20
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211
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1
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Drop values in expression dataset python
geo python geoparse rna-seq written 8 months ago by highfillchad • 0 • updated 7 months ago by zorbax • 230
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Analysing GSE datasets with GEOquery
geo R rna-seq written 3.6 years ago by IsmailM • 110 • updated 8 months ago by meteorickliu • 0
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