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<prev • 225 results • page 1 of 8 • next >
54
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2.4k
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53 follow
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 8 months ago by Kevin Blighe ♦ 44k • updated 14 hours ago by modarzi • 70
0
votes
1
answer
69
views
1
answer
GEO differential expression analysis
geo R deg written 4 days ago by yehchan57 • 0 • updated 4 days ago by zephyr_falcon • 60
3
votes
1
answer
142
views
5 follow
1
answer
How to create own SRAdb
geo sra sradb written 7 days ago by Deepak Tanwar • 3.9k • updated 7 days ago by Sean Davis ♦ 25k
6
votes
1
answer
193
views
1
answer
Differentially expressed genes from expression table (RNAseq)
geo deg expression table rna-seq written 22 days ago by english.server • 160 • updated 22 days ago by ATpoint ♦ 18k
2
votes
1
answer
99
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6 follow
1
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How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 27 days ago by Helen • 30 • updated 27 days ago by predeus • 1.1k
12
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2
answers
3.6k
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10 follow
2
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.2 years ago by predeus • 1.1k • updated 27 days ago by Helen • 30
0
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1
answer
125
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1
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Using GEOquery to download multiple expression data series files and then combine
ncbi geo expression array rna-seq R written 6 weeks ago by kmyers2 • 20 • updated 6 weeks ago by Kevin Blighe ♦ 44k
2
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0
answers
163
views
0
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Download microarray data from GEO
geo microarray written 10 weeks ago by tolsma.joseph • 0
2
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1
answer
226
views
1
answer
Download data from GEO/SRA using link
geo sra fastq written 10 weeks ago by rioualen • 360 • updated 10 weeks ago by genomax ♦ 68k
0
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119
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How can I get the ID reference genes in GEO ?
geo id reference gene id written 11 weeks ago by Lila M • 470
0
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0
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222
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Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
ega geo forum written 3 months ago by Shicheng Guo • 7.5k • updated 3 months ago by Devon Ryan ♦ 90k
1
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0
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166
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0
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Automated tool for downloading Autism data from GEO on Humans
geo autism programming written 3 months ago by naseerkhan861 • 0
7
votes
1
answer
279
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1
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For GEO data, how to calculate the average methylation level of the gene promoter region using R.
geo methylation written 3 months ago by a511512345 • 80 • updated 3 months ago by Kevin Blighe ♦ 44k
4
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0
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331
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0
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WGCNA network Analysis
geo wgcna network tcga R written 4 months ago by biotechuos4 • 0 • updated 4 months ago by zx8754 ♦ 7.5k
3
votes
2
answers
357
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2
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Programmatic access to Sample Information from GEO via GSM or SRR number
geo written 5 months ago by seidel ♦ 6.8k • updated 5 months ago by vkkodali • 1.1k
8
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0
answers
1.8k
views
0
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Tool: Digital Expression Explorer
geo tool rna-seq written 3.7 years ago by mark.ziemann • 1.2k
203
votes
9
answers
86k
views
182 follow
9
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.8 years ago by Obi Griffith ♦ 17k • updated 6 months ago by Renesh • 1.6k
0
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1
answer
269
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1
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GEO .cel file and the preview table are they the same thing?
geo microarray rna-seq written 6 months ago by Boboboe • 10 • updated 6 months ago by Ahill • 1.5k
2
votes
1
answer
442
views
1
answer
How to map Affymetrix probe ID's from a GEO dataset to corresponding gene symbols?
geo R bioconductor written 8 months ago by Davide Chicco • 80 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
252
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1
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Gene not found in Affymetrix expression profiles
geo arabidopsis thaliana affymetrix written 7 months ago by lorenzo_fabbri • 10 • updated 7 months ago by h.mon ♦ 26k
2
votes
1
answer
340
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1
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Differentially expressed genes data sets for download
geo dataset differentially expressed genes gsea written 8 months ago by Mk • 10 • updated 8 months ago by Istvan Albert ♦♦ 80k
3
votes
1
answer
552
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1
answer
Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 8 months ago by halo22 • 120 • updated 8 months ago by Charles Warden ♦ 6.9k
2
votes
0
answers
445
views
5 follow
0
answers
Detection p-value Illumina beadchip
geo illumina beadchip written 8 months ago by elb • 160
3
votes
1
answer
427
views
1
answer
Submit High-Throughput data to GEO. Problems with FTP connection
geo ftp next-gen written 8 months ago by mgdrnl • 10 • updated 8 months ago by arup • 1.4k
1
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1.2k
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Why does submitting high-throughput sequence data to GEO from an Amazon EC2 instance produce the error "Could not read reply from control connection -- timed out" ?
geo ftp next-gen written 22 months ago by Daniel Gerlach • 30 • updated 8 months ago by mgdrnl • 10
0
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0
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818
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GEO submission for small RNA
geo ncbi small rna written 3.3 years ago by #### • 190 • updated 9 months ago by RamRS ♦ 22k
9
votes
1
answer
711
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1
answer
Multiple probe for same gene
gene geo bioconductor written 9 months ago by Natasha • 30 • updated 9 months ago by Kevin Blighe ♦ 44k
2
votes
1
answer
538
views
1
answer
Parsing values from GSE file
gene geo bioconductor written 9 months ago by Natasha • 30 • updated 9 months ago by Kevin Blighe ♦ 44k
4
votes
1
answer
573
views
1
answer
Gene expression data from GEO
gene geo microarray written 10 months ago by Natasha • 30
0
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0
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291
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0
answers
Transcript information from GDS files to find gene length
gene geo bioconductor written 10 months ago by Natasha • 30
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