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<prev • 213 results • page 1 of 8 • next >
3
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Programmatic access to Sample Information from GEO via GSM or SRR number
geo written 4 days ago by seidel ♦ 6.6k • updated 4 days ago by vkkodali • 850
8
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0
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1.5k
views
0
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Tool: Digital Expression Explorer
geo tool rna-seq written 3.2 years ago by mark.ziemann • 1.1k
183
votes
9
answers
76k
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162 follow
9
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.4 years ago by Obi Griffith ♦ 17k • updated 4 weeks ago by Renesh • 1.5k
0
votes
1
answer
133
views
1
answer
GEO .cel file and the preview table are they the same thing?
geo microarray rna-seq written 5 weeks ago by Boboboe • 10 • updated 5 weeks ago by Ahill • 1.3k
0
votes
1
answer
233
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1
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How to map Affymetrix probe ID's from a GEO dataset to corresponding gene symbols?
geo R bioconductor written 11 weeks ago by Davide Chicco • 40 • updated 9 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
169
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1
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Gene not found in Affymetrix expression profiles
geo arabidopsis thaliana affymetrix written 10 weeks ago by lorenzo_fabbri • 10 • updated 10 weeks ago by h.mon ♦ 22k
2
votes
1
answer
203
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1
answer
Differentially expressed genes data sets for download
geo dataset differentially expressed genes gsea written 12 weeks ago by Mk • 10 • updated 12 weeks ago by Istvan Albert ♦♦ 78k
23
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0
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610
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23 follow
0
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Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 12 weeks ago by Kevin Blighe ♦ 35k
3
votes
1
answer
233
views
1
answer
Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 3 months ago by halo22 • 120 • updated 3 months ago by Charles Warden ♦ 5.9k
2
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0
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224
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5 follow
0
answers
Detection p-value Illumina beadchip
geo illumina beadchip written 3 months ago by elb • 160
3
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1
answer
174
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1
answer
Submit High-Throughput data to GEO. Problems with FTP connection
geo ftp next-gen written 3 months ago by mgdrnl • 0 • updated 3 months ago by arup • 720
1
vote
0
answers
848
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0
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Why does submitting high-throughput sequence data to GEO from an Amazon EC2 instance produce the error "Could not read reply from control connection -- timed out" ?
geo ftp next-gen written 16 months ago by Daniel Gerlach • 30 • updated 3 months ago by mgdrnl • 0
0
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0
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698
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0
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GEO submission for small RNA
geo ncbi small rna written 2.9 years ago by #### • 170 • updated 4 months ago by RamRS ♦ 20k
9
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1
answer
407
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1
answer
Multiple probe for same gene
gene geo bioconductor written 4 months ago by Natasha • 30 • updated 4 months ago by Kevin Blighe ♦ 35k
2
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1
answer
322
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1
answer
Parsing values from GSE file
gene geo bioconductor written 4 months ago by Natasha • 30 • updated 4 months ago by Kevin Blighe ♦ 35k
4
votes
1
answer
336
views
1
answer
Gene expression data from GEO
gene geo microarray written 4 months ago by Natasha • 30
0
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0
answers
182
views
0
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Transcript information from GDS files to find gene length
gene geo bioconductor written 4 months ago by Natasha • 30
2
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3
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791
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6 follow
3
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Downloading from GEO
geo written 17 months ago by landscape95 • 150 • updated 5 months ago by Shicheng Guo • 7.3k
1
vote
1
answer
162
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1
answer
GEO search filtering
geo rnaseq filter written 5 months ago by cilgaiscan • 30 • updated 5 months ago by btsui • 280
2
votes
1
answer
276
views
1
answer
Where I can find GPL15314 annotation file?
geo gpl id convert annotation written 5 months ago by fanglujing • 30 • updated 5 months ago by genomax ♦ 60k
2
votes
1
answer
244
views
1
answer
count tables from RNA-seq data on GEOmetadb
geometadb geo geoquery sradb rna-seq written 5 months ago by rahel14350 • 20 • updated 5 months ago by Sean Davis ♦ 25k
7
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1
answer
2.0k
views
5 follow
1
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Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
geo R tutorial geoquery microarray written 11 months ago by martinguerrerog89 • 260 • updated 6 months ago by zx8754 ♦ 6.2k
4
votes
1
answer
259
views
1
answer
series_matrix.txt in GEO are they always the normalized values?
geo series_matrix.txt written 6 months ago by Leite • 310 • updated 6 months ago by Kevin Blighe ♦ 35k
0
votes
0
answers
225
views
0
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How can I add gene symbol name in to gpl.soft file?
geo R gene written 6 months ago by gbahramali • 20 • updated 6 months ago by zx8754 ♦ 6.2k
0
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0
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415
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0
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GEO Affymetrix microarray datasets: how are series matrix files obtained from CEL files?
geo probes probe sets microarray cel written 6 months ago by Ld_60 • 30
48
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4
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24k
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31 follow
4
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How To Download All Sra Samples At Once ?
geo sra download written 4.9 years ago by biorepine • 1.4k • updated 7 months ago by Federico Giorgi • 420
4
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0
answers
384
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0
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Tool: GREIN: An interactive web platform for re-processing and re-analyzing GEO RNA-seq data
geo enrichment processed data tool rna-seq written 7 months ago by Naim.Mahi • 40
0
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1
answer
326
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1
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Finding Gene Symbols for Probes in Raw Data
gene gpl gse chip-seq geo written 7 months ago by samet • 0
3
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0
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575
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0
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How to handle Log2 Transformation that creates Nan Values
geo R microarray limma written 8 months ago by farzaneafzali • 10 • updated 8 months ago by WouterDeCoster ♦ 35k
1
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1
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465
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1
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Unit of gene expression in GEO2R
genome geo expression geo2r gene written 9 months ago by sina.majidian • 0 • updated 9 months ago by Kevin Blighe ♦ 35k
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