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<prev • 177 results • page 1 of 6 • next >
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Accessing Expression Levels for Genes of Interest from GEO Experiments
geo fpkm rna rna-seq lncrna written 19 months ago by a.aiezza • 30 • updated 7 days ago by Biostar ♦♦ 20
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125
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GEO2R - significantly DEGs
geo geo2r deg written 19 days ago by hcv • 0
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Where to find DNase-seq and RNA-seq assays for various cancer lines?
genome geo dnase-seq rna-seq sequencing written 6 weeks ago by vue • 0 • updated 6 weeks ago by jared.andrews07 • 140
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190
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Integrating microarray datasets from multiple series/studies
geo normalization microarray data integration written 7 weeks ago by lessismore • 310 • updated 7 weeks ago by theobroma22 • 1.0k
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3
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Data retrieval from GEO
geo metadata microarray bulk download written 7 weeks ago by lessismore • 310 • updated 7 weeks ago by Leandro Lima • 830
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197
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GEO data preprocessing with fRMA, limma and sva packages
geo written 8 weeks ago by landscape95 • 70 • updated 8 weeks ago by lessismore • 310
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Why does submitting high-throughput sequence data to GEO from an Amazon EC2 instance produce the error "Could not read reply from control connection -- timed out" ?
geo ftp next-gen written 8 weeks ago by Daniel Gerlach • 20
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Retrieving data from NCBI GEO and RNA-Seq Data Analysis
geo R normalization rna-seq count written 9 weeks ago by hkarakurt • 0 • updated 9 weeks ago by theobroma22 • 1.0k
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420
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1
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Normalizing Illumina fastq read-lengths from different GEO datasets
geo fastq rna-seq written 11 weeks ago by rbronste • 150
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203
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Question on number of probes in CEL and SOFT from GEO
geo written 3 months ago by landscape95 • 70 • updated 3 months ago by theobroma22 • 1.0k
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2
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203
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Downloading from GEO
geo written 3 months ago by landscape95 • 70 • updated 3 months ago by Santosh Anand • 3.0k
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1
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194
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1
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Get mRNA, miRNA, lncRNA specific for probes
geo written 3 months ago by landscape95 • 70 • updated 3 months ago by Samuel Brady • 230
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1
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259
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Clinical data from GEO
geo written 3 months ago by landscape95 • 70 • updated 3 months ago by Istvan Albert ♦♦ 74k
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Combine .CEL files from RAW GEO compressed file into 1 matrix
geo written 3 months ago by landscape95 • 70
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1
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Expression data missing in a GEO study
geo bioconductor geoquery written 3.1 years ago by William • 4.0k • updated 3 months ago by vegard nygaard • 90
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1
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253
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1
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Data mining for 300 genes from GEO
geo written 5 months ago by RT • 300 • updated 4 months ago by theobroma22 • 1.0k
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1
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289
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How to know a RNA-seq is polyA or total-RNA-seq in GEO?
geo rna-seq written 4 months ago by bxia • 100 • updated 4 months ago by Devon Ryan ♦ 71k
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277
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Analysing GSE datasets with GEOquery
geo R rna-seq written 4 months ago by IsmailM • 80
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285
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Getting sample information from GEO
geo ncbi written 5 months ago by Tom_L • 210
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232
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1
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How to provide re-analysis link to previous dataset in GEO page
geo written 5 months ago by Shicheng Guo • 4.5k • updated 5 months ago by igor • 4.6k
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277
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1
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Extract Bibliographic Reference from GEO dataset using EFetch?
geo ncbi efetch written 5 months ago by Tom • 10 • updated 5 months ago by Santosh Anand • 3.0k
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265
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Expression data preprocess and normalization
geo R bioconductor gse rna-seq written 5 months ago by hkarakurt • 0
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1
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283
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Downloading normalized data from GEO
geo normalization R written 6 months ago by Fereshteh • 2.7k • updated 6 months ago by mforde84 • 940
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1
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349
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1
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GEOquery R Package Error: cannot open URL (http://)
geo R analysis microarray error written 6 months ago by jblack29 • 0 • updated 6 months ago by Santosh Anand • 3.0k
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1
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589
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1
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 7 months ago by predeus • 360 • updated 6 months ago by Gregor Sturm • 40
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246
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eUtils and GEO database
geo ncbi eutils written 8 months ago by russhh • 2.6k • updated 7 months ago by Biostar ♦♦ 20
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197
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From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 7 months ago by jiab • 20
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251
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1
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Cancer data for histone Chip-seq in human and mouse
geo sra cancer chip-seq histone written 7 months ago by Saad Khan • 310 • updated 7 months ago by Ben • 50
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Meta-analysis of Microarray datasets.
gene geo microarray meta-analysis written 7 months ago by biotechuos4 • 0 • updated 7 months ago by theobroma22 • 1.0k
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How to filter GSE series which have normalized log ratios for experimental cases and normal controls?
geo gse log-ratio written 8 months ago by urwa • 0
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