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written 12 weeks ago by
vladimir.vinarsky • 0
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written 2.8 years ago by
nazaninhoseinkhan • 410
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murshad.60ali • 10
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How to compare DGE between different groups and create a volcano plot in R based on a GEO2R dataset?
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written 2.5 years ago by
sina.majidian • 0
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2.5 years ago by
Kevin Blighe ♦ 66k
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written 2.8 years ago by
mannoulag1 • 60
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written 4.5 years ago by
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written 5.2 years ago by
Bioinformatist Newbie • 250
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Recent Votes
- C: Homer error "findMotifsGenome.pl" : Can't locate HomerConfig.pm in @INC
- A: Homer error "findMotifsGenome.pl" : Can't locate HomerConfig.pm in @INC
- C: magicblast aganist local nr database
- C: How to create alternate reference for SNPs?
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- A: fold change vs standardized effect size
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Recent Replies
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A: Why is a SNP in 23andMe data if the genotype is homozygous reference? by
JC ♦ 12k
Because you could need them for other analysis, linkage, gwas, etc
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C: Looping over list in R by
rpolicastro • 2.1k
In your current code you are saving the plot to a variable but never rendering it into the file. ...
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C: Homer error "findMotifsGenome.pl" : Can't locate HomerConfig.pm in @INC by
changshengw6 • 0
Would you mind giving a detailed step? I am a newbie and use conda. Thanks in advance.
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C: magicblast aganist local nr database by
genomax ♦ 91k
Documentation for magicblast only refers to using a (one) genome/transcriptome (or at most a few ...
-
C: magicblast aganist local nr database by
Assa Yeroslaviz • 1.4k
But I don't have a FASTA file. I have a BLAST DB, splitted into several files hence the *00*, ...
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C: How to create alternate reference for SNPs? by
Parham • 1.5k
Thanks! Yes, I have the reference and the idea is to make an alternate version of that reference ...
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C: magicblast aganist local nr database by
Assa Yeroslaviz • 1.4k
I know, I wanted to run it against the `nt` database, not `nr`.
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C: magicblast aganist local nr database by
genomax ♦ 91k
Heed this warning from magicblast help page. Trying to map against `nt` will not be a good idea. ...
-
C: magicblast aganist local nr database by
genomax ♦ 91k
`magicblast` is only meant for use against DNA databases.
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C: denovo assembly using soap denovo by
a4appy23 • 10
Im trying to reconstruct a contig level assembly using genome A reads. i tried with k31 and k51 a...
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C: magicblast aganist local nr database by
Assa Yeroslaviz • 1.4k
Hello Assa Yeroslaviz! We believe that this post does not fit the main topic of this site. I h...
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C: How can I extract all the GCA_0000000. from bac120.tree? by
anran04100 • 0
Sorry. I will pay more attention to this the next time. I have solved this problem. Thank you any...
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