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GATK GenomicsDBImport - use list as input
gatk germline vqsr genomicsdbimport written 3 months ago by gabi30 • updated 3 months ago by geneart$$40
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Does HaploypeCaller detects somatic mutations also?
haplotypecaller exome mutation somatic germline written 3 months ago by svp240 • updated 3 months ago by WouterDeCoster44k
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CNVkit cnv_ztest with low log2 values
cnvkit germline cnv_ztest exome sequencing written 4 months ago by merella.stefania10 • updated 4 months ago by genomax92k
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Structural variation germline vs somatic ?
somatic structural variation germline written 7 months ago by Picasa570 • updated 7 months ago by metinyazar8810
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amplicon based germline CNV caller
amplicon cnv germline written 3.3 years ago by J.F.Jiang850 • updated 16 months ago by lffu_003260
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how to download ICGC germline mutation data?
icgc germline written 22 months ago by sxs8709170 • updated 22 months ago by genomax92k
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GERMLINE software libc and libstdc++ error
software error libstdc++ germline written 22 months ago by moithuti0 • updated 22 months ago by Devon Ryan97k
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Germline CNV Databases for Healthy and/or Cancer Patients
genome sequence copynumbervariation germline written 24 months ago by tohc0 • updated 24 months ago by Garan650
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germline calling of tumor-normal paired sample germline by varscan2
tumor-normal varscan2 germline written 2.6 years ago by oghzzang40 • updated 2.5 years ago by ATpoint41k
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 2.7 years ago by checkyodna30 • updated 2.7 years ago by RamRS30k
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CNVkit segmetrics error
wes cnv germline written 2.7 years ago by SPDouglas0 • updated 2.7 years ago by Eric T.2.6k
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 2.8 years ago by lait150 • updated 2.8 years ago by Noushin N580
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How do I get germline mutation data from TCGA ?
tcga germline written 3.0 years ago by passage5430 • updated 3.0 years ago by Kevin Blighe67k
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CNVkit for germline samples
cnvkit next-gen targetsequencing germline written 3.2 years ago by merella.stefania10 • updated 3.2 years ago by Eric T.2.6k
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tips for checking variants in IGV
bam igv germline written 3.5 years ago by jan130 • updated 3.5 years ago by Vivek2.4k
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germline vs. somatic mutations in cancer samples
somatic whole exome sequencing germline written 3.5 years ago by maheetha.b70 • updated 3.5 years ago by DG7.2k
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