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Showing: gff • reset
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<prev • 215 results • page 1 of 8 • next >
2
votes
1
answer
67
views
1
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collapsing GFF coordinates with common start OR stop
bedtools perl gff parse script written 18 hours ago by Anand Rao • 150 • updated 17 hours ago by h.mon ♦ 16k
4
votes
2
answers
390
views
2
answers
How to extract all promoter regions in multi-fasta format from genome using GFF?
genome fasta gff promoter written 5 months ago by rimgubaev • 40
1
vote
1
answer
131
views
1
answer
ssrs filtering from gff3 file
genome gff rna-seq ssrs written 16 days ago by moohit21 • 0 • updated 16 days ago by Vijay Lakhujani ♦ 2.8k
0
votes
0
answers
82
views
0
answers
Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
evidence gff genemark-es training written 18 days ago by gabri • 30
0
votes
0
answers
85
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0
answers
prepare a GFF file for MOCK fasta reference
genome gff sequence written 28 days ago by Sam • 70
1
vote
1
answer
810
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5 follow
1
answer
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 18 months ago by R.Blues • 80 • updated 5 weeks ago by nicolas.dussex • 30
9
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2
answers
5.9k
views
8 follow
2
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Get intronic and intergenic sequences based on gff file
gff written 3.9 years ago by biolab • 1.0k • updated 5 weeks ago by zx8754 ♦ 4.7k
1
vote
2
answers
1.6k
views
2
answers
Converting from BED to SAF/GFF
saf bed gff featurecount written 19 months ago by ccag • 30 • updated 6 weeks ago by ATpoint • 5.7k
2
votes
1
answer
208
views
1
answer
How do I filter out transcripts with less than two exons
bedtools bed gff galaxy written 7 weeks ago by alex.v.nesta • 0 • updated 7 weeks ago by cpad0112 • 7.7k
0
votes
1
answer
171
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5 follow
1
answer
getting a combination of all predicted genes
bedtools gff written 8 weeks ago by bitpir • 70 • updated 8 weeks ago by Alex Reynolds ♦ 24k
0
votes
0
answers
119
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0
answers
GFF liftOver using CrossMap is failing.
software error gff crossmap liftover written 9 weeks ago by kirannbishwa01 • 810
43
votes
4
answers
39k
views
20 follow
4
answers
Convertion Of Gff3 To Gtf
gtf gff written 6.2 years ago by geek_y ♦ 8.6k • updated 9 weeks ago by Asbesto • 0
1
vote
1
answer
134
views
1
answer
Using GFF3Writer in Biopython
gff3 ensembl gff biopython written 9 weeks ago by Alice • 230 • updated 9 weeks ago by finswimmer ♦ 3.6k
2
votes
1
answer
121
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1
answer
Get summary of augustus ouput (gff)
augustus gff written 9 weeks ago by Toto26 • 10 • updated 9 weeks ago by goodez • 240
2
votes
1
answer
154
views
1
answer
IGV tracks gene annotation
gene gff igv written 11 weeks ago by bitpir • 70 • updated 11 weeks ago by h.mon ♦ 16k
5
votes
2
answers
9.6k
views
2
answers
Gff Or Bed File For Hg19 Genome
genome seq gff hg19 written 4.9 years ago by rob.costa1234 • 150 • updated 11 weeks ago by h.mon ♦ 16k
6
votes
1
answer
154
views
1
answer
Removal of gene sequences from genome.
genome gff blast written 11 weeks ago by Candah • 60 • updated 11 weeks ago by Pierre Lindenbaum ♦ 110k
3
votes
0
answers
265
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 3 months ago by Toto26 • 10
1
vote
1
answer
205
views
1
answer
bedtools getfasta (how to get only cds coding sequence)
mac fasta gff written 3 months ago by benjamin • 0
1
vote
1
answer
256
views
1
answer
How to generate a new FASTA from an assembly-assembly mapping ?
assembly gff samtools mapping sequencing written 5 months ago by maxime.policarpo • 20 • updated 4 months ago by tdmurphy • 110
0
votes
0
answers
309
views
0
answers
MCScanX not read input files
mcscanx gff synteny blastp written 5 months ago by a.e.wright • 0
1
vote
1
answer
307
views
1
answer
GFF to fasta
perl annotation gff sequencing genome written 5 months ago by mmats010 • 60
4
votes
2
answers
459
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2
answers
GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 5 months ago by arsilan324 • 60
0
votes
0
answers
197
views
0
answers
How to crop gff feature into pieces when an overlap is found
bedtools annotation gff bedops genome written 6 months ago by rimjhim.roy.ch • 70
2
votes
1
answer
1.3k
views
6 follow
1
answer
Read counts of STAR with gff file
gff read-counts star written 12 months ago by grant.hovhannisyan • 900
0
votes
2
answers
274
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2
answers
comparing annotations between genomes.
annotation gff crossmap liftover written 7 months ago by Ric • 180
0
votes
1
answer
430
views
1
answer
Frame of CDS on reverse strand: I don't get it or is there a problem in file?
frame gff reverse strand written 7 months ago by saintpierre.bioinfo • 0
0
votes
0
answers
431
views
0
answers
Looking for a thorough annotation for non-primary assembly units in GRCm38
gtf mus musculus grcm38 gff gencode written 8 months ago by erwan.scaon • 550
3
votes
1
answer
879
views
7 follow
1
answer
Tool to generate a chain file from an agp file
agp crossmap gff chain written 20 months ago by greentailedmouse • 40 • updated 8 months ago by Malcolm.Cook • 800
4
votes
1
answer
836
views
1
answer
htseq-count error Feature does not contain a 'gene_id' attribute
htseq gff read count rna-seq written 8 months ago by madzayasodara • 10 • updated 8 months ago by WouterDeCoster ♦ 30k
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