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<prev • 189 results • page 1 of 7 • next >
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GFF from tabular Blast output
gff tabix blast igv written 19 days ago by salvatore.lachina • 0
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121
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RSEM with prokaryotes
gtf genome gff rsem annotation written 25 days ago by csmatyi1 • 0 • updated 25 days ago by Devon Ryan ♦ 70k
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How to get flanking exon coordinate based on gencode gtf/gff or biomart
gtf annotation biomart gff gencode written 5 weeks ago by ZheFrench • 50
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1
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194
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1
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help with Gene Bank annotation and GFF file
gff genebank rna-seq written 6 weeks ago by hamaor • 0 • updated 6 weeks ago by h.mon ♦ 8.7k
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170
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Read counts of STAR with gff file
gff read-counts star written 8 weeks ago by grant.hovhannisyan • 260
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gff3 to gtf
gtf gff next-gen written 16 months ago by luanabarbos • 0 • updated 9 weeks ago by grant.hovhannisyan • 260
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Gff file error in HTSeq-count
gff htseq count written 3 months ago by y.gladbach • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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178
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Any good parser with Python??
fasta python gff biopython written 3 months ago by lessismore • 170 • updated 3 months ago by badribio • 200
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gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff cufflink gffread written 4 months ago by qwzhang0601 • 50 • updated 3 months ago by elaak91 • 0
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4
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295
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4
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Mapping between genomic coordinates to transcriptomic coordinates
vcf gtf gff snp written 4 months ago by MMa • 210 • updated 4 months ago by cmdcolin • 680
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257
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1
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How to select specific values (features and attributes) from gtf/gff file and convert it into table like data?
gtf gff attributes features written 4 months ago by kirannbishwa01 • 530 • updated 4 months ago by h.mon ♦ 8.7k
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403
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6 follow
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Tool to generate a chain file from an agp file
agp crossmap gff chain written 9 months ago by greentailedmouse • 40
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1
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164
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1
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Ortholog Map from Whole Genome Alignment (WGA)
annotation gff alignment wga ortholog written 5 months ago by Felix Bemm • 10
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1
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191
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Fasta to gff with custom set of genes
fasta genome gff deseq2 rna-seq written 5 months ago by tlorin • 170 • updated 5 months ago by Macspider • 1.5k
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311
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Error running gffcompare
gff stringtie gffcompare rna-seq written 5 months ago by Vijay Lakhujani • 1.2k • updated 5 months ago by Macspider • 1.5k
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197
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GFF end coordinate used by mappers to determine gene transcription termination
gff termination rna-seq written 5 months ago by emurb • 0 • updated 5 months ago by Devon Ryan ♦ 70k
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1
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302
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1
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Finding gff3 or gtf files for small non-coding RNA
gtf gff small non-coding rna written 5 months ago by y.gladbach • 0
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3
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14 follow
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Convertion Of Gff3 To Gtf
gtf gff written 5.3 years ago by geek_y ♦ 8.0k
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347
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Convert bed12 to GFF
bed gff bed12 written 7 months ago by cmdcolin • 680
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1
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260
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1
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From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcript)
gtf gff rna-seq written 7 months ago by Walter Baumann • 0 • updated 7 months ago by Jeffin Rockey • 390
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446
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1
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convert GFF to GTF?
gtf gff written 7 months ago by sun.nation • 90
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1
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1
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Gff to fasta: Sort and extract sub-feature sequences from fasta in python
python gff biopython gff2fasta gffutils written 2.4 years ago by rimjhim.roy.ch • 50 • updated 7 months ago by Biostar ♦♦ 20
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335
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1
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Help me with my GFFex results
gff intron intergenic written 13 months ago by elfkatzenbr • 0 • updated 8 months ago by Biostar ♦♦ 20
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398
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Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 8 months ago by R.Blues • 60
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1
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570
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1
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Converting from BED to SAF/GFF
saf bed gff featurecount written 9 months ago by ccag • 20 • updated 9 months ago by Jeffin Rockey • 390
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 9 months ago by al-ash • 0
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264
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gff without phase information (column 8)
gff genemodels written 9 months ago by thibault.leroy • 0
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397
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1
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blastx output cut-off for creating gff
gff blastx ngs written 10 months ago by Whoknows • 590
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2
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Tabix With Gff3
gff3 tabix gff written 3.6 years ago by kevin.mohamed1992 • 0 • updated 10 months ago by marcela.uliano • 30
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1
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GFF/GTF for small ncRNAs
gtf gff ncrna small ncrna written 10 months ago by lironyoffe • 0 • updated 10 months ago by michael.ante • 1.6k
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