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<prev • 182 results • page 1 of 7 • next >
0
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4
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131
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4
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Mapping between genomic coordinates to transcriptomic coordinates
vcf gtf gff snp written 22 days ago by MMa • 100 • updated 23 minutes ago by cmdcolin • 510
0
votes
0
answers
101
views
0
answers
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff cufflink gffread written 15 days ago by qwzhang0601 • 40 • updated 15 days ago by genomax ♦ 28k
0
votes
1
answer
135
views
1
answer
How to select specific values (features and attributes) from gtf/gff file and convert it into table like data?
gtf gff attributes features written 26 days ago by kirannbishwa01 • 390 • updated 23 days ago by h.mon ♦ 5.8k
2
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0
answers
269
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5 follow
0
answers
Tool to generate a chain file from an agp file
agp crossmap gff chain written 5 months ago by greentailedmouse • 40
0
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1
answer
94
views
1
answer
Ortholog Map from Whole Genome Alignment (WGA)
annotation gff alignment wga ortholog written 4 weeks ago by Felix Bemm • 0
2
votes
1
answer
105
views
1
answer
Fasta to gff with custom set of genes
fasta genome gff deseq2 rna-seq written 5 weeks ago by tlorin • 150 • updated 5 weeks ago by Macspider • 1.1k
1
vote
1
answer
122
views
1
answer
Error running gffcompare
gff stringtie gffcompare rna-seq written 5 weeks ago by Vijay Lakhujani • 670 • updated 5 weeks ago by Macspider • 1.1k
1
vote
1
answer
112
views
1
answer
GFF end coordinate used by mappers to determine gene transcription termination
gff termination rna-seq written 6 weeks ago by emurb • 0 • updated 6 weeks ago by Devon Ryan ♦ 66k
3
votes
1
answer
164
views
1
answer
Finding gff3 or gtf files for small non-coding RNA
gtf gff small non-coding rna written 7 weeks ago by y.gladbach • 0
28
votes
2
answers
26k
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13 follow
2
answers
Convertion Of Gff3 To Gtf
gtf gff written 5.0 years ago by Goutham Atla ♦ 7.1k
1
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0
answers
179
views
0
answers
Convert bed12 to GFF
bed gff bed12 written 3 months ago by cmdcolin • 510
0
votes
1
answer
167
views
1
answer
From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcript)
gtf gff rna-seq written 3 months ago by Walter Baumann • 0 • updated 3 months ago by Jeffin Rockey • 270
1
vote
1
answer
255
views
1
answer
convert GFF to GTF?
gtf gff written 3 months ago by sun.nation • 90
2
votes
1
answer
1.6k
views
1
answer
Gff to fasta: Sort and extract sub-feature sequences from fasta in python
python gff biopython gff2fasta gffutils written 2.1 years ago by rimjhim.roy.ch • 50 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
259
views
1
answer
Help me with my GFFex results
gff intron intergenic written 9 months ago by elfkatzenbr • 0 • updated 4 months ago by Biostar ♦♦ 20
1
vote
0
answers
260
views
0
answers
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 4 months ago by R.Blues • 50
0
votes
1
answer
312
views
1
answer
Converting from BED to SAF/GFF
saf bed gff featurecount written 5 months ago by ccag • 20 • updated 5 months ago by Jeffin Rockey • 270
1
vote
1
answer
573
views
1
answer
How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 5 months ago by al-ash • 0
0
votes
0
answers
193
views
0
answers
gff without phase information (column 8)
gff genemodels written 5 months ago by thibault.leroy • 0
1
vote
1
answer
299
views
1
answer
blastx output cut-off for creating gff
gff blastx ngs written 6 months ago by Whoknows • 510
2
votes
2
answers
2.6k
views
2
answers
Tabix With Gff3
gff3 tabix gff written 3.3 years ago by kevin.mohamed1992 • 0 • updated 6 months ago by marcela.uliano • 20
0
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1
answer
293
views
1
answer
GFF/GTF for small ncRNAs
gtf gff ncrna small ncrna written 6 months ago by lironyoffe • 0 • updated 6 months ago by michael.ante • 1.6k
4
votes
4
answers
841
views
4
answers
GTF/GFF for non-coding RNA
gtf ensembl gff annotation long non-coding written 11 months ago by pm2012 • 80 • updated 6 months ago by lironyoffe • 0
14
votes
4
answers
8.8k
views
10 follow
4
answers
Any tools converting Genbank format to GFF3 format?
gff genbank written 2.2 years ago by biolab • 860 • updated 6 months ago by sara.barbosa.salazar • 0
4
votes
1
answer
271
views
1
answer
Converting binary GFF3 to text
annotation gff written 7 months ago by novice • 580
0
votes
1
answer
246
views
1
answer
fasta + gff -> genbank
genome fasta gff sequence genbank written 7 months ago by j.dolata • 0
17
votes
2
answers
9.6k
views
7 follow
2
answers
Converting Gff/Gtf + Reference To Embl Or Genbank ...Any Tools Available?
gff genbank written 4.0 years ago by JacobS • 850 • updated 7 months ago by j.dolata • 0
25
votes
6
answers
20k
views
16 follow
6
answers
Extract Cds Fastas From A Gff Annotation + Reference Sequence
cds gff written 5.0 years ago by Federico Giorgi • 350 • updated 7 months ago by sutturka • 50
2
votes
1
answer
327
views
1
answer
Convert BLAT to GFF file?
psl annotation gff alignment blat written 7 months ago by rm16 • 0
3
votes
2
answers
421
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2
answers
Subset multiple FASTA with a set of intervals provided in a BED/GFF file?
fasta gff written 9 months ago by ksw • 40 • updated 9 months ago by Alex Reynolds ♦ 19k
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