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<prev • 232 results • page 1 of 8 • next >
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Filtering GFF annotations file
R gff maker written 3 days ago by alslonik • 70
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88
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1
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Getting GFF annotation from sequence coordinates.
ncbi python gff gene annotation written 6 days ago by jsporter • 60
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2
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293
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8 follow
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Visualize multiple GFF files
overlap gff visualization statistics written 5 months ago by Anand Rao • 190 • updated 10 days ago by jrj.healey ♦ 9.8k
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172
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1
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'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 4 weeks ago by NielQC • 10 • updated 16 days ago by tdmurphy • 160
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Gff file error in HTSeq-count
gff htseq count written 19 months ago by y.gladbach • 0 • updated 16 days ago by Biostar ♦♦ 20
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122
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How to get non-redundant set from multiple GFF files
gene gff homology-based gene prediction written 19 days ago by bio_d • 0
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129
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Merging 2 GFF files
gff3 gff combine merge written 6 weeks ago by bwczech • 40
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How to convert genomic position to transcript position?
gff written 2.9 years ago by biolab • 1.1k • updated 9 weeks ago by Biostar ♦♦ 20
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1.1k
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1
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Convert bed12 to GFF
bed gff bed12 written 23 months ago by cmdcolin • 1.0k
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145
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R bioconductor package `rtracklayer` possible memory leakage
R gff bioconductor memory leakage written 12 weeks ago by Chirag Parsania • 1.3k
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186
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1
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GFF file multiple features for 1 gene region, how to collapse into 1?
bedtools gff rna-seq written 3 months ago by YOUSEUFS • 10 • updated 3 months ago by Carambakaracho • 660
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175
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Fetched gene from gff file shows similarity to other organism
gff reference written 3 months ago by shubhra.bhattacharya • 120
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238
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Making Zero based coordinate system in gff file
gene gff written 3 months ago by 1234anjalianjali1234 • 30
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343
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1
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How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff parse written 3 months ago by a.rex • 170 • updated 3 months ago by Malcolm.Cook • 940
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3
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GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 11 months ago by arsilan324 • 60 • updated 3 months ago by Shaun Jackman • 420
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1
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GFF3 to GTF
gtf gff written 2.9 years ago by silas008 • 70 • updated 4 months ago by RamRS ♦ 20k
2
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1
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246
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5 follow
1
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Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 4 months ago by 1234anjalianjali1234 • 30 • updated 4 months ago by rjactonspsfcf • 80
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2.5k
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1
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Cufflinks gffread utility
gff cufflinks reverse complement gffread written 2.6 years ago by Thomas • 90 • updated 4 months ago by madzayasodara • 0
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1
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2.5k
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1
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Merging Blastx Hits From Overlapping Bacterial Genome Segments
genome annotation gff bacteria blast written 8.9 years ago by Darked89 ♦ 4.2k • updated 4 months ago by RamRS ♦ 20k
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1
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316
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5 follow
1
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Calculate CDS phase in gff3 format
genome feature format cds gff phase written 4 months ago by marongiu.luigi • 350 • updated 4 months ago by Carambakaracho • 660
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303
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1
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What is wrong with NCBI's gff file?
gff written 5 months ago by rimgubaev • 70
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1
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222
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1
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some questions on GFF3
gtf annotation gff written 5 months ago by prasundutta87 • 300
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333
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1
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gffread query for gff to gtf conversion
gtf annotation gff software written 5 months ago by prasundutta87 • 300
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1
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261
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1
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gffread error when converting gff to gtf
gtf software error gff gffread written 5 months ago by LucasK • 0 • updated 5 months ago by Jeffin Rockey • 1000
2
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1
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176
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1
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collapsing GFF coordinates with common start OR stop
bedtools perl gff parse script written 5 months ago by Anand Rao • 190 • updated 5 months ago by h.mon ♦ 22k
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710
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How to extract all promoter regions in multi-fasta format from genome using GFF?
genome fasta gff promoter written 11 months ago by rimgubaev • 70
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236
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ssrs filtering from gff3 file
genome gff rna-seq ssrs written 6 months ago by moohit21 • 0 • updated 6 months ago by Vijay Lakhujani ♦ 3.5k
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343
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Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
evidence gff genemark-es training written 6 months ago by gabri • 40
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194
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prepare a GFF file for MOCK fasta reference
genome gff sequence written 6 months ago by Sam • 80
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5 follow
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Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 2.0 years ago by R.Blues • 80 • updated 7 months ago by nicolas.dussex • 30
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