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<prev • 257 results • page 1 of 9 • next >
1
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141
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1
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Make a GFF-file compatible for reference database
ensembl gff mysql rna-seq gene-counter written 13 days ago by viktoria.c.karlsson • 0
3
votes
1
answer
71
views
1
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Extract SNPs from VCF file located in genes or flanking +/- 5Kbp on GFF file
vcf bedtools gff written 12 days ago by User000 • 280 • updated 12 days ago by jared.andrews07 ♦ 5.0k
2
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2
answers
1.5k
views
2
answers
Convert BLAT to GFF file?
psl annotation gff alignment blat written 3.4 years ago by rm16 • 0 • updated 16 days ago by pengchy • 410
5
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2
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4.5k
views
2
answers
Easy Way To Map Cds Coordinates To Genomic Coordinates
cds gff coordinates mapping bed written 8.9 years ago by Alper Yilmaz • 90 • updated 23 days ago by Shicheng Guo • 8.1k
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1
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1.1k
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1
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Frame of CDS on reverse strand: I don't get it or is there a problem in file?
frame gff reverse strand written 2.2 years ago by saintpierre.bioinfo • 0 • updated 6 weeks ago by Biostar ♦♦ 20
5
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0
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325
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6 follow
0
answers
Tool: AGAT - Another Gff Analysis Toolkit
gtf annotation gff toolkit tool written 9 weeks ago by Juke-34 • 3.3k
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1
answer
1.9k
views
1
answer
Creating Gff File For Orthomcl Clusters
gff clustering written 7.0 years ago by thakurshalabh • 60 • updated 8 weeks ago by Biostar ♦♦ 20
12
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0
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671
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6 follow
0
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Blog: Review of the GFF and GTF formats (GFF / GFF1 / GFF2 / GFF2.5 / GFF3 / GTF / GTF2 / GTF2.1 / GTF2.2 / ...)
genome gene gff blog gtf written 11 months ago by Juke-34 • 3.3k
0
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1
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152
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1
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replace gene names in gff file
augustus annotation gff gene genome written 11 weeks ago by arunprasanna83 • 40 • updated 11 weeks ago by Juke-34 • 3.3k
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2
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1.0k
views
5 follow
2
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How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff parse written 17 months ago by a.rex • 200 • updated 12 weeks ago by Juke-34 • 3.3k
0
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0
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101
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0
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Conversion of gff3 to vcf4.2 file
vcf gff pacbio written 3 months ago by ambarishnag • 0
4
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2
answers
135
views
5 follow
2
answers
awk gff column change
gff awk written 3 months ago by rob234king • 580 • updated 3 months ago by yztxwd • 290
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1
answer
319
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1
answer
Using featureCount with a GFF file
gff alignment featurecount metagenomics written 3 months ago by allerdrengen55 • 20
2
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2
answers
4.3k
views
2
answers
Gff Format And Rna Seq Alignment
gff rna written 8.5 years ago by User 2889 • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
166
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1
answer
Relate CDS annotation to parent gene
genome gff written 4 months ago by Mostafa Mahmoud • 0 • updated 3 months ago by Juke-34 • 3.3k
3
votes
0
answers
275
views
0
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Converting assembled genomes (.fna) and predicted genes (.faa) to genbank or gff file?
genome annotation gff microbiology genbank written 6 months ago by bioguy • 40 • updated 3 months ago by Biostar ♦♦ 20
0
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1
answer
165
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1
answer
Predicting coding sequence region from GFF with exons + reference genome
genome annotation gff augustus maker written 4 months ago by Grey Monroe • 10 • updated 4 months ago by Juke-34 • 3.3k
2
votes
1
answer
175
views
1
answer
generating 'maximal' cds sequence from multiple isoforms of a gene
gene cds gff written 4 months ago by mforthman • 30 • updated 4 months ago by Brice Sarver • 3.5k
4
votes
1
answer
196
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1
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Visualize short nucleotide sequences and some ranges on top
bed gff visualization written 4 months ago by mschmid • 150 • updated 4 months ago by bernatgel • 2.4k
2
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0
answers
224
views
0
answers
Extracting START and STOP codon position from Augustus GFF
augustus gff3 grep gff gene prediction written 4 months ago by mhfk2901 • 10
1
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1
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363
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5 follow
1
answer
How to annotate FASTA genome using GFF genes from another genome?
fasta annotation gff program genome written 7 months ago by Macspider • 3.0k
10
votes
4
answers
10k
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13 follow
4
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.7 years ago by lwc628 • 210 • updated 8 months ago by m13113153781 • 0
9
votes
2
answers
333
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 8 months ago by alexis.groppi • 30
4
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1
answer
5.4k
views
1
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Tabix With Gff3
gff3 tabix gff written 6.1 years ago by kevin.mohamed1992 • 0 • updated 8 months ago by Biostar ♦♦ 20
10
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1
answer
1.6k
views
1
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What Is The Correct Specification For Gff3?
gff3 gff written 7.2 years ago by Alex Reynolds ♦ 29k • updated 8 months ago by Biostar ♦♦ 20
7
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2
answers
6.9k
views
9 follow
2
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How To Merge Gff Files
gff merge written 6.9 years ago by upendrakumar.devisetty • 360 • updated 8 months ago by O.rka • 170
3
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2
answers
336
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2
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remove UTR annotations from gff
gff written 8 months ago by rob234king • 580 • updated 8 months ago by Ace • 70
1
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1
answer
549
views
1
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Distance of promoter from TSS
annotation gff promoter transcription written 9 months ago by ognjen011 • 200 • updated 9 months ago by mrals89 • 50
2
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0
answers
420
views
0
answers
Amino acid sequence from CDS information of gff file
cds gff amino acid written 9 months ago by doubleA • 0
1
vote
0
answers
424
views
0
answers
Annotation problem while using Rsubread
gtf annotation gff written 10 months ago by gokberk • 60
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