0
votes
0
replies
1
view
0
votes
1
reply
27
views
updated 42 minutes ago by
jared.andrews07
9.3k
•
written 5 hours ago by
raisamathenge
▴
10
0
votes
0
replies
15
views
0
votes
0
replies
80
views
3 hours ago by
adamnaj
•
0
580
votes
155
replies
64k
views
89 follow
0
votes
0
replies
44
views
3 hours ago by
timea.volenter
•
0
0
votes
0
replies
20
views
0
votes
1
reply
37
views
updated 5 hours ago by
Mensur Dlakic
★
10k
•
written 5 hours ago by
roybatty269
•
0
0
votes
0
replies
24
views
6 hours ago by
fpizzagalli
•
0
0
votes
0
replies
23
views
0
votes
1
reply
55
views
updated 6 hours ago by
Mensur Dlakic
★
10k
•
written 10 hours ago by
noahhelton98
▴
10
2
votes
5
replies
252
views
updated 6 hours ago by
Zhenyu Zhang
▴
270
•
written 6 weeks ago by
loughrae
▴
70
0
votes
1
reply
94
views
updated 7 hours ago by
Zhenyu Zhang
▴
270
•
written 29 days ago by
p20170409
•
0
1
vote
3
replies
64
views
0
votes
5
replies
118
views
updated 8 hours ago by
GenoMax
99k
•
written 10 hours ago by
gonzalezb549
•
0
1
vote
1
reply
83
views
updated 10 hours ago by
Kevin Blighe
72k
•
written 4 days ago by
moxu
▴
480
1
vote
1
reply
2.1k
views
updated 10 hours ago by
Kevin Blighe
72k
•
written 2 days ago by
leesooyeon94
▴
10
0
votes
1
reply
58
views
updated 10 hours ago by
Kevin Blighe
72k
•
written 1 day ago by
Mran
•
0
0
votes
0
replies
37
views
0
votes
4
replies
107
views
1 hour ago by
lincaijin1994
•
0
1
vote
2
replies
96
views
0
votes
1
reply
54
views
1
vote
4
replies
89
views
updated 12 hours ago by
Martombo
★
2.7k
•
written 13 hours ago by
LacquerHed
•
0
0
votes
2
replies
63
views
updated 11 hours ago by
cpad0112
15k
•
written 12 hours ago by
twinklemishra0892
•
0
0
votes
3
replies
88
views
4 hours ago by
najioumayma
▴
10
0
votes
1
reply
51
views
updated 12 hours ago by
Arup Ghosh
2.8k
•
written 13 hours ago by
lmlukoseviciute
▴
20
1
vote
1
reply
50
views
0
votes
0
replies
27
views
14 hours ago by
anikcropscience
▴
40
0
votes
1
reply
45
views
updated 14 hours ago by
GenoMax
99k
•
written 14 hours ago by
marongiu.luigi
▴
560
2
votes
1
reply
56
views
updated 14 hours ago by
GenoMax
99k
•
written 15 hours ago by
victoriahristovaa
•
0
0
votes
0
replies
23
views
0
votes
0
replies
26
views
0
votes
0
replies
20
views
0
votes
2
replies
84
views
16 hours ago by
kilcdincer
▴
10
0
votes
0
replies
40
views
17 hours ago by
info
▴
60
0
votes
0
replies
36
views
1
vote
8
replies
144
views
0
votes
0
replies
33
views
18 hours ago by
info
▴
60
9
votes
8
replies
136
views
15 hours ago by
rafaelsolersanblas
▴
70
5
votes
3
replies
177
views
0
votes
4
replies
151
views
3
votes
3
replies
91
views
updated 20 hours ago by
shenwei356
5.8k
•
written 21 hours ago by
shubhamkumbhar420
•
0
0
votes
1
reply
73
views
updated 21 hours ago by
Pierre Lindenbaum
135k
•
written 21 hours ago by
mscpythonstudy
•
0
0
votes
2
replies
91
views
0
votes
1
reply
90
views
updated 20 hours ago by
4galaxy77
▴
400
•
written 1 day ago by
GiantSilverSoy
▴
20
0
votes
0
replies
80
views
0
votes
0
replies
61
views
4
votes
5
replies
151
views
0
votes
0
replies
33
views
4
votes
4
replies
116
views
updated 1 day ago by
seidel
7.6k
•
written 1 day ago by
geneticatt
▴
120
Recent Votes
Recent Locations •
All
São Paulo, 2 minutes ago
United States, 3 minutes ago
New York, 5 minutes ago
Mexicali, 6 minutes ago
United States, 11 minutes ago
China, 13 minutes ago
Seattle, WA USA, 16 minutes ago
Recent Awards •
All
Teacher to
Alex Reynolds
32k
Popular Question to
Nicolas Rosewick
9.4k
Popular Question to
I0110
▴
120
Popular Question to
ivivek_ngs
★
5.1k
Voter to
Leandro Lima
▴
960
Popular Question to
ATCG
▴
300
Popular Question to
jimhavrilla
▴
10
Recent Replies
Comment: Question about methods monitoring the change from dsDNA/RNA to ssRNA/DNA
by
Sophie
•
0
Ok thank you
Answer: Understanding the ColData Matrix
by
jared.andrews07
9.3k
Row names of the `colData` should match the column names of the `counts` matrix, each respective row or column representing a sample. `colD…
Comment: How to plot a image like this.
by
lincaijin1994
•
0
Thank you! But it seems that GenVisR doesn't include the function to repeat such a plot after reading its user guides. I wonder if you can …
Answer: format conversion using OpenBabel
by
Mensur Dlakic
★
10k
It says clearly on their [**web page**][1] that `sdf` and `pdbqt` are among supported formats. If you can't do it directly, try converting …
Answer: Program for predicting RNA sequences that may bind to a protein Domain
by
Mensur Dlakic
★
10k
I don't think you will be able to find such a tool. To answer your question more broadly, we do not have the ability to predict target sequ…
Comment: HaplotypeCaller VCF depth is greater than the number of reads in bam
by
wang.yiguan
•
0
Thanks, `--dont-use-soft-clipped-bases` solved the problem. It seems `samtools view/tview` doesn't show the soft clip base.
If I don't u…
Answer: Understanding TCGA's ASCAT copy number data
by
Zhenyu Zhang
▴
270
TCGA SNP6 ASCAT data shares the same format as WGS ASCAT data.
If you search ASCAT in GDC documentation, you will find this page with det…
Answer: GDC Data Query
by
Zhenyu Zhang
▴
270
are you complaining about getting full matrix data instead of truncated data?
btw, for TCGA data in GDC, better to specify if it's legacy …
Comment: Meaning letters in TCGA sample barcode field
by
Zhenyu Zhang
▴
270
I am pretty sure CPT is from CPTAC, and HCM is from HCMI. Neither are TCGA projects.
Btw, using barcode is not a good habit in general. I …
Comment: Identification of the sequence insertion site in the genome
by
LacquerHed
•
0
If the BAM file represents a pretty small insertion, how can it be found once opened in IGV? Thanks.
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta?
by
GenoMax
99k
You can try it out and let us know :-)
Good to know about it though. Thanks for posting the link.
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta?
by
Dunois
▴
620
Hi @genomax , how are you?
I'm looking at `Compacta` because I'd rather not use `CD-HIT` or `MMseqs2` if I can.
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta?
by
GenoMax
99k
Have you tried `CD-HIT` ([**LINK**][1]) for this application?
[1]: http://weizhongli-lab.org/cd-hit/
Comment: Cellranger count.srun issues
by
GenoMax
99k
That does not make logical sense based on error which said command not found. If a prior script worked with same `PATH` but if this is gene…
Comment: Cellranger count.srun issues
by
gonzalezb549
•
0
cellranger is for sure installed. A sample script using the same commands just different fastq paths worked fine but for some reason this s…
Traffic: 1221 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6