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3
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278
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1
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blast2gff IndexError: list index out of range
python gff blast2gff blast blastn written 5 months ago by Begonia_pavonina • 20 • updated 8 days ago by onkarnath89 • 0
1
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2
answers
644
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7 follow
2
answers
IGV memory on Windows
gff igv written 9 months ago by liorglic • 340 • updated 11 days ago by Noah • 10
1
vote
3
answers
174
views
3
answers
Is there any tool/API available to convert GTF/GFF to JSON format?
gtf ncbi gff json ensembl written 6 weeks ago by lakhujanivijay ♦ 5.4k • updated 6 weeks ago by vkkodali • 2.4k
0
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0
answers
102
views
0
answers
Arrow GFF Does Not List All Polishing Changes
arrow gff polishing pacbio written 6 weeks ago by Charles Warden ♦ 8.0k
0
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1
answer
287
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1
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HOMER annotatePeaks.pl with GFF. How to specify a feature?
homer gff chip-seq peakcalling annotation written 11 months ago by callapus • 0 • updated 7 weeks ago by Qiongyi • 100
0
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0
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147
views
0
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Using augustus gene model gff as STAR input
gff genemodels rna-seq genemodel written 3 months ago by hydra_questions • 20
0
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1
answer
204
views
1
answer
Error with gff file while building snpeff database
gff snpeff java error written 9 weeks ago by kristina.mahan • 120 • updated 9 weeks ago by Fatima • 890
5
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2
answers
781
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6 follow
2
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comparing annotations between genomes.
annotation gff crossmap liftover written 3.1 years ago by Ric • 330 • updated 10 weeks ago by Priyam • 20
1
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0
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175
views
0
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Difference of transcripts between my GFF file and the IGV results
gff transcripts igv written 11 weeks ago by pablo • 160
2
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2
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254
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2
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Getting a gff file from NCBI
ncbi gff written 11 weeks ago by kristina.mahan • 120 • updated 11 weeks ago by Arsenal • 20
0
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0
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121
views
0
answers
How do I get a gtf file to use rnaQUAST
gtf ensembl gff rnaquast gencode written 11 weeks ago by kristina.mahan • 120
0
votes
1
answer
165
views
1
answer
How to use gff file of old annotation to annotate new assembly
annotation chloroplast genome gff written 3 months ago by kristina.mahan • 120 • updated 3 months ago by shelkmike • 320
0
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1
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258
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1
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Using gffread to extract annotated fasta sequences from a genome
genome gff alignment sequencing written 3 months ago by rgn5011 • 0
0
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0
answers
151
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0
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Convert the NT position in a VCF file to an AA position
vcf gff ivar written 3 months ago by SaltedPork • 110
4
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1
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227
views
1
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How much the sorting order of a gff file matters?
annotation gff rna-seq written 4 months ago by Shred • 230 • updated 4 months ago by Juke34 • 5.0k
1
vote
1
answer
161
views
1
answer
GFF3 transcript name
gff3 gff transcript resource written 4 months ago by blur • 150
3
votes
1
answer
557
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1
answer
Convert .gbff (gene bank flat format) to gff3, gtf
genome gtf gff genebank gbff written 5 months ago by alex • 0 • updated 5 months ago by Juke34 • 5.0k
0
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0
answers
174
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0
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A piece of advice on subsetting genomes
fasta genome gff annotations blast written 5 months ago by Begonia_pavonina • 20
2
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1
answer
204
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1
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inclusion or exclusion in gff by list of chromosomes/scaffolds
gff written 5 months ago by Jeffin Rockey • 1.2k
0
votes
0
answers
424
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0
answers
Parsing GFF with biopython throws error
gff biopython written 6 months ago by Juliofdiaz • 130 • updated 5 months ago by Biostar ♦♦ 20
1
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0
answers
205
views
0
answers
How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 5 months ago by T_18 • 40
0
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1
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1.9k
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1
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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
gtf tophat gff rna-seq written 5.6 years ago by manekineko • 140 • updated 5 months ago by Biostar ♦♦ 20
0
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0
answers
287
views
0
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intersection of two GFFs
bedtools gff intersect written 7 months ago by BioDH • 0 • updated 6 months ago by Biostar ♦♦ 20
2
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0
answers
406
views
0
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Tutorial: Sorting GFF/GTF files
gtf gff sort annotation forum tutorial written 6 months ago by Juke34 • 5.0k
3
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1
answer
229
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1
answer
Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 6 months ago by gabri • 50 • updated 6 months ago by Joe ♦ 18k
2
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1
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5.2k
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1
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 4.1 years ago by al-ash • 150 • updated 7 months ago by Biostar ♦♦ 20
3
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0
answers
213
views
0
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Simple genome annotation using transcripts data
fasta annotation gff written 7 months ago by liorglic • 340
37
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7
answers
20k
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14 follow
7
answers
How To Convert Blast Results To Gff
gff format blast written 10.9 years ago by Michael Barton • 1.8k • updated 7 months ago by Biostar ♦♦ 20
4
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3
answers
360
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3
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Bedtools intersect not reporting all overlaps
bedtools bedtools intersect gff artemis bed written 7 months ago by jamie.pike • 60
4
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2
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2.2k
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2
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lowercase fasta coordinates to GFF
lowercase fasta gff written 5.9 years ago by Biomonika (Noolean) ♦ 3.1k • updated 7 months ago by bcontreras • 10
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