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Number of discovered genes in genome does not correspond with published annotation
ncbi genome gff rna-seq annotation written 7 hours ago by P16226 • 0 • updated 2 hours ago by vkkodali • 910
1
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0
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139
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0
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Filtering GFF annotations file
R gff maker written 4 weeks ago by alslonik • 70
1
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1
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140
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1
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Getting GFF annotation from sequence coordinates.
ncbi python gff gene annotation written 5 weeks ago by jsporter • 60
12
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2
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341
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8 follow
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Visualize multiple GFF files
overlap gff visualization statistics written 6 months ago by Anand Rao • 210 • updated 5 weeks ago by jrj.healey ♦ 10k
5
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1
answer
235
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1
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'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 8 weeks ago by NielQC • 10 • updated 6 weeks ago by tdmurphy • 160
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1.4k
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0
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Gff file error in HTSeq-count
gff htseq count written 20 months ago by y.gladbach • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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157
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0
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How to get non-redundant set from multiple GFF files
gene gff homology-based gene prediction written 7 weeks ago by bio_d • 0
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159
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0
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Merging 2 GFF files
gff3 gff combine merge written 10 weeks ago by bwczech • 60
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1
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1.6k
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1
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How to convert genomic position to transcript position?
gff written 2.9 years ago by biolab • 1.1k • updated 3 months ago by Biostar ♦♦ 20
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1
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1.2k
views
1
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Convert bed12 to GFF
bed gff bed12 written 2.0 years ago by cmdcolin • 1.1k
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163
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0
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R bioconductor package `rtracklayer` possible memory leakage
R gff bioconductor memory leakage written 3 months ago by Chirag Parsania • 1.3k
0
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1
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218
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1
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GFF file multiple features for 1 gene region, how to collapse into 1?
bedtools gff rna-seq written 4 months ago by YOUSEUFS • 10 • updated 4 months ago by Carambakaracho • 750
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196
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0
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Fetched gene from gff file shows similarity to other organism
gff reference written 4 months ago by shubhra.bhattacharya • 120
1
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260
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0
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Making Zero based coordinate system in gff file
gene gff written 4 months ago by 1234anjalianjali1234 • 30
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376
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1
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How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff parse written 4 months ago by a.rex • 170 • updated 4 months ago by Malcolm.Cook • 970
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3
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1.1k
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3
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GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 12 months ago by arsilan324 • 70 • updated 4 months ago by Shaun Jackman • 420
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1
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3.4k
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1
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GFF3 to GTF
gtf gff written 3.0 years ago by silas008 • 80 • updated 5 months ago by RamRS ♦ 20k
2
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1
answer
273
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5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 5 months ago by 1234anjalianjali1234 • 30 • updated 5 months ago by rjactonspsfcf • 80
5
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1
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2.5k
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1
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Cufflinks gffread utility
gff cufflinks reverse complement gffread written 2.7 years ago by Thomas • 90 • updated 5 months ago by madzayasodara • 0
5
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1
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2.5k
views
1
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Merging Blastx Hits From Overlapping Bacterial Genome Segments
genome annotation gff bacteria blast written 9.0 years ago by Darked89 ♦ 4.2k • updated 5 months ago by RamRS ♦ 20k
6
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1
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378
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5 follow
1
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Calculate CDS phase in gff3 format
genome feature format cds gff phase written 5 months ago by marongiu.luigi • 360 • updated 5 months ago by Carambakaracho • 750
7
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1
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340
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1
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What is wrong with NCBI's gff file?
gff written 6 months ago by rimgubaev • 70
1
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1
answer
245
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1
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some questions on GFF3
gtf annotation gff written 6 months ago by prasundutta87 • 300
1
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1
answer
371
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1
answer
gffread query for gff to gtf conversion
gtf annotation gff software written 6 months ago by prasundutta87 • 300
0
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1
answer
301
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1
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gffread error when converting gff to gtf
gtf software error gff gffread written 6 months ago by LucasK • 0 • updated 6 months ago by Jeffin Rockey • 1000
2
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1
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191
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1
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collapsing GFF coordinates with common start OR stop
bedtools perl gff parse script written 6 months ago by Anand Rao • 210 • updated 6 months ago by h.mon ♦ 23k
5
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2
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792
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2
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How to extract all promoter regions in multi-fasta format from genome using GFF?
genome fasta gff promoter written 12 months ago by rimgubaev • 70
1
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1
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253
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1
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ssrs filtering from gff3 file
genome gff rna-seq ssrs written 7 months ago by moohit21 • 0 • updated 7 months ago by biokoala ♦ 3.6k
0
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0
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381
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0
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Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
evidence gff genemark-es training written 7 months ago by gabri • 50
0
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213
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0
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prepare a GFF file for MOCK fasta reference
genome gff sequence written 7 months ago by Sam • 100
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