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How to convert genomic position to transcript position?
gff written 2.7 years ago by biolab • 1.0k • updated 5 days ago by Biostar ♦♦ 20
3
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1
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1.1k
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1
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Convert bed12 to GFF
bed gff bed12 written 21 months ago by cmdcolin • 930
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94
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R bioconductor package `rtracklayer` possible memory leakage
R gff bioconductor memory leakage written 25 days ago by Chirag Parsania • 1.2k
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1
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122
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1
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GFF file multiple features for 1 gene region, how to collapse into 1?
bedtools gff rna-seq written 29 days ago by YOUSEUFS • 10 • updated 29 days ago by Carambakaracho • 570
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118
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Fetched gene from gff file shows similarity to other organism
gff reference written 5 weeks ago by shubhra.bhattacharya • 70
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192
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Making Zero based coordinate system in gff file
gene gff written 6 weeks ago by 1234anjalianjali1234 • 30
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1
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275
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1
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How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff parse written 6 weeks ago by a.rex • 170 • updated 6 weeks ago by Malcolm.Cook • 850
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3
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813
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3
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GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 9 months ago by arsilan324 • 60 • updated 7 weeks ago by Shaun Jackman • 420
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1
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3.2k
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1
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GFF3 to GTF
gtf gff written 2.7 years ago by silas008 • 70 • updated 8 weeks ago by RamRS ♦ 19k
2
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1
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179
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5 follow
1
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Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 9 weeks ago by 1234anjalianjali1234 • 30 • updated 9 weeks ago by rjactonspsfcf • 80
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1
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2.3k
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1
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Cufflinks gffread utility
gff cufflinks reverse complement gffread written 2.5 years ago by Thomas • 90 • updated 9 weeks ago by madzayasodara • 0
5
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1
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2.5k
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1
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Merging Blastx Hits From Overlapping Bacterial Genome Segments
genome annotation gff bacteria blast written 8.7 years ago by Darked89 ♦ 4.2k • updated 10 weeks ago by RamRS ♦ 19k
6
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1
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209
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5 follow
1
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Calculate CDS phase in gff3 format
genome feature format cds gff phase written 11 weeks ago by marongiu.luigi • 330 • updated 11 weeks ago by Carambakaracho • 570
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176
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Visualize multiple GFF files
overlap gff visualization statistics written 3 months ago by Anand Rao • 160
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1
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225
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1
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What is wrong with NCBI's gff file?
gff written 3 months ago by rimgubaev • 70
1
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1
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173
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1
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some questions on GFF3
gtf annotation gff written 3 months ago by prasundutta87 • 260
1
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1
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229
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1
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gffread query for gff to gtf conversion
gtf annotation gff software written 3 months ago by prasundutta87 • 260
0
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1
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195
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1
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gffread error when converting gff to gtf
gtf software error gff gffread written 3 months ago by LucasK • 0 • updated 3 months ago by Jeffin Rockey • 760
2
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1
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156
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1
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collapsing GFF coordinates with common start OR stop
bedtools perl gff parse script written 3 months ago by Anand Rao • 160 • updated 3 months ago by h.mon ♦ 21k
5
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2
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611
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2
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How to extract all promoter regions in multi-fasta format from genome using GFF?
genome fasta gff promoter written 9 months ago by rimgubaev • 70
1
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1
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207
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1
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ssrs filtering from gff3 file
genome gff rna-seq ssrs written 4 months ago by moohit21 • 0 • updated 4 months ago by Vijay Lakhujani ♦ 3.2k
0
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270
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0
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Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
evidence gff genemark-es training written 4 months ago by gabri • 40
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162
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prepare a GFF file for MOCK fasta reference
genome gff sequence written 4 months ago by Sam • 80
1
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1
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972
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5 follow
1
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Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 22 months ago by R.Blues • 80 • updated 5 months ago by nicolas.dussex • 30
13
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2
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6.7k
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10 follow
2
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Get intronic and intergenic sequences based on gff file
gff written 4.2 years ago by biolab • 1.0k • updated 5 months ago by zx8754 ♦ 5.6k
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2.0k
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2
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Converting from BED to SAF/GFF
saf bed gff featurecount written 23 months ago by ccag • 30 • updated 5 months ago by ATpoint ♦ 9.3k
2
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1
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313
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1
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How do I filter out transcripts with less than two exons
bedtools bed gff galaxy written 5 months ago by alex.v.nesta • 0 • updated 5 months ago by cpad0112 • 10.0k
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1
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250
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5 follow
1
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getting a combination of all predicted genes
bedtools gff written 5 months ago by bitpir • 100 • updated 5 months ago by Alex Reynolds ♦ 26k
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263
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GFF liftOver using CrossMap is failing.
software error gff crossmap liftover written 6 months ago by kirannbishwa01 • 880
47
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3
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42k
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20 follow
3
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Convertion Of Gff3 To Gtf
gtf gff written 6.5 years ago by geek_y ♦ 8.8k • updated 6 months ago by Asbesto • 0
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