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<prev • 291 results • page 1 of 10 • next >
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How to use gff file of old annotation to annotate new assembly
annotation chloroplast genome gff written 11 days ago by kristina.mahan • 100 • updated 10 days ago by shelkmike • 270
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96
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Using gffread to extract annotated fasta sequences from a genome
genome gff alignment sequencing written 21 days ago by rgn5011 • 0
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79
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Convert the NT position in a VCF file to an AA position
vcf gff ivar written 21 days ago by SaltedPork • 110
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1
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162
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1
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How much the sorting order of a gff file matters?
annotation gff rna-seq written 6 weeks ago by Shred • 220 • updated 6 weeks ago by Juke34 • 4.8k
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109
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1
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GFF3 transcript name
gff3 gff transcript resource written 6 weeks ago by blur • 140
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214
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Convert .gbff (gene bank flat format) to gff3, gtf
genome gtf gff genebank gbff written 7 weeks ago by alex • 0 • updated 7 weeks ago by Juke34 • 4.8k
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126
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A piece of advice on subsetting genomes
fasta genome gff annotations blast written 8 weeks ago by Begonia_pavonina • 20
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164
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1
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blast2gff IndexError: list index out of range
python gff blast2gff blast blastn written 8 weeks ago by Begonia_pavonina • 20
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147
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1
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inclusion or exclusion in gff by list of chromosomes/scaffolds
gff written 9 weeks ago by Jeffin Rockey • 1.1k
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259
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Parsing GFF with biopython throws error
gff biopython written 3 months ago by Juliofdiaz • 130 • updated 9 weeks ago by Biostar ♦♦ 20
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How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 9 weeks ago by T_18 • 40
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1
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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
gtf tophat gff rna-seq written 5.3 years ago by manekineko • 130 • updated 11 weeks ago by Biostar ♦♦ 20
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200
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intersection of two GFFs
bedtools gff intersect written 4 months ago by BioDH • 0 • updated 3 months ago by Biostar ♦♦ 20
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209
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Tutorial: Sorting GFF/GTF files
gtf gff sort annotation forum tutorial written 3 months ago by Juke34 • 4.8k
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161
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1
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Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 3 months ago by gabri • 50 • updated 3 months ago by Joe ♦ 18k
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 3.8 years ago by al-ash • 140 • updated 3 months ago by Biostar ♦♦ 20
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151
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Simple genome annotation using transcripts data
fasta annotation gff written 4 months ago by liorglic • 330
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14 follow
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How To Convert Blast Results To Gff
gff format blast written 10.6 years ago by Michael Barton • 1.8k • updated 4 months ago by Biostar ♦♦ 20
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3
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258
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3
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Bedtools intersect not reporting all overlaps
bedtools bedtools intersect gff artemis bed written 4 months ago by jamie.pike • 50
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2
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lowercase fasta coordinates to GFF
lowercase fasta gff written 5.6 years ago by Biomonika (Noolean) ♦ 3.1k • updated 4 months ago by bcontreras • 0
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323
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Extract list of gene coordinates from gff file
gene python gff grep awk written 4 months ago by the_cowa • 40
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181
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1
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Correct gtf file format (AGAT toolkit)
gtf gff3 gff agat rna-seq written 4 months ago by tianshenbio • 50 • updated 4 months ago by Juke34 • 4.8k
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2
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351
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2
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IGV memory on Windows
gff igv written 6 months ago by liorglic • 330 • updated 4 months ago by Jim Robinson • 290
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2
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290
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2
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Retrieving GO mappings for GOseq analysis with non-native organism
topgo gff gene ontology gaf goseq written 4 months ago by thomas.welch • 20
4
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1
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199
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1
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How to extract sequence of a specific feature in gff
genome assembly gff rna-seq written 4 months ago by tianshenbio • 50 • updated 4 months ago by Juke34 • 4.8k
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226
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Adding Gene Name attribute to CDS feature ??
genome annotation gff written 4 months ago by Mostafa Mahmoud • 0
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1
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156
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1
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BLAST and GFF script to find locations of SNPs
gff blast script snp written 5 months ago by Kiki_01 • 0
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177
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0
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Extract protein sequences or names based on GFF and protein file
gff unix written 5 months ago by T_18 • 40
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103
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0
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Blast2gff index issue
gff blast2gff blastn index written 5 months ago by Begonia_pavonina • 20
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216
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1
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Extract ID and go terms from annotation gff file, one go term per line
go term gff written 5 months ago by Cecelia • 20 • updated 5 months ago by JC ♦ 11k
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