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0
votes
2
answers
880
views
2
answers
gff3 to gtf
gtf gff next-gen written 13 months ago by luanabarbos • 0 • updated 1 day ago by grant.hovhannisyan • 70
5
votes
0
answers
142
views
0
answers
Gff file error in HTSeq-count
gff htseq count written 5 weeks ago by y.gladbach • 0 • updated 14 days ago by Biostar ♦♦ 20
1
vote
1
answer
125
views
1
answer
Any good parser with Python??
fasta python gff biopython written 6 weeks ago by lessismore • 20 • updated 6 weeks ago by badribio • 150
0
votes
0
answers
192
views
0
answers
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff cufflink gffread written 10 weeks ago by qwzhang0601 • 40 • updated 7 weeks ago by elaak91 • 0
1
vote
4
answers
220
views
4
answers
Mapping between genomic coordinates to transcriptomic coordinates
vcf gtf gff snp written 11 weeks ago by MMa • 210 • updated 8 weeks ago by cmdcolin • 640
0
votes
1
answer
178
views
1
answer
How to select specific values (features and attributes) from gtf/gff file and convert it into table like data?
gtf gff attributes features written 11 weeks ago by kirannbishwa01 • 470 • updated 11 weeks ago by h.mon ♦ 7.2k
2
votes
0
answers
342
views
6 follow
0
answers
Tool to generate a chain file from an agp file
agp crossmap gff chain written 7 months ago by greentailedmouse • 40
0
votes
1
answer
129
views
1
answer
Ortholog Map from Whole Genome Alignment (WGA)
annotation gff alignment wga ortholog written 12 weeks ago by Felix Bemm • 10
2
votes
1
answer
152
views
1
answer
Fasta to gff with custom set of genes
fasta genome gff deseq2 rna-seq written 3 months ago by tlorin • 170 • updated 3 months ago by Macspider • 1.2k
1
vote
1
answer
205
views
1
answer
Error running gffcompare
gff stringtie gffcompare rna-seq written 3 months ago by Vijay Lakhujani • 1.1k • updated 3 months ago by Macspider • 1.2k
1
vote
1
answer
153
views
1
answer
GFF end coordinate used by mappers to determine gene transcription termination
gff termination rna-seq written 3 months ago by emurb • 0 • updated 3 months ago by Devon Ryan ♦ 68k
3
votes
1
answer
218
views
1
answer
Finding gff3 or gtf files for small non-coding RNA
gtf gff small non-coding rna written 3 months ago by y.gladbach • 0
29
votes
3
answers
27k
views
13 follow
3
answers
Convertion Of Gff3 To Gtf
gtf gff written 5.2 years ago by Goutham Atla ♦ 7.2k
1
vote
0
answers
259
views
0
answers
Convert bed12 to GFF
bed gff bed12 written 5 months ago by cmdcolin • 640
0
votes
1
answer
218
views
1
answer
From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcript)
gtf gff rna-seq written 5 months ago by Walter Baumann • 0 • updated 5 months ago by Jeffin Rockey • 370
1
vote
1
answer
343
views
1
answer
convert GFF to GTF?
gtf gff written 5 months ago by sun.nation • 90
2
votes
1
answer
1.7k
views
1
answer
Gff to fasta: Sort and extract sub-feature sequences from fasta in python
python gff biopython gff2fasta gffutils written 2.2 years ago by rimjhim.roy.ch • 50 • updated 5 months ago by Biostar ♦♦ 20
0
votes
1
answer
304
views
1
answer
Help me with my GFFex results
gff intron intergenic written 11 months ago by elfkatzenbr • 0 • updated 6 months ago by Biostar ♦♦ 20
1
vote
0
answers
336
views
0
answers
Variant Effect Predictor parameters for custom gff and fasta
fasta gff vep snp written 6 months ago by R.Blues • 60
0
votes
1
answer
404
views
1
answer
Converting from BED to SAF/GFF
saf bed gff featurecount written 7 months ago by ccag • 20 • updated 7 months ago by Jeffin Rockey • 370
1
vote
1
answer
810
views
1
answer
How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 7 months ago by al-ash • 0
0
votes
0
answers
229
views
0
answers
gff without phase information (column 8)
gff genemodels written 7 months ago by thibault.leroy • 0
1
vote
1
answer
349
views
1
answer
blastx output cut-off for creating gff
gff blastx ngs written 8 months ago by Whoknows • 570
2
votes
2
answers
2.7k
views
2
answers
Tabix With Gff3
gff3 tabix gff written 3.5 years ago by kevin.mohamed1992 • 0 • updated 8 months ago by marcela.uliano • 20
0
votes
1
answer
341
views
1
answer
GFF/GTF for small ncRNAs
gtf gff ncrna small ncrna written 8 months ago by lironyoffe • 0 • updated 8 months ago by michael.ante • 1.6k
4
votes
4
answers
993
views
4
answers
GTF/GFF for non-coding RNA
gtf ensembl gff annotation long non-coding written 13 months ago by pm2012 • 80 • updated 8 months ago by lironyoffe • 0
14
votes
4
answers
9.3k
views
10 follow
4
answers
Any tools converting Genbank format to GFF3 format?
gff genbank written 2.4 years ago by biolab • 890 • updated 8 months ago by sara.barbosa.salazar • 0
4
votes
1
answer
327
views
1
answer
Converting binary GFF3 to text
annotation gff written 8 months ago by novice • 670
0
votes
1
answer
303
views
1
answer
fasta + gff -> genbank
genome fasta gff sequence genbank written 9 months ago by j.dolata • 0
18
votes
2
answers
10k
views
7 follow
2
answers
Converting Gff/Gtf + Reference To Embl Or Genbank ...Any Tools Available?
gff genbank written 4.2 years ago by JacobS • 850 • updated 9 months ago by j.dolata • 0
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