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<prev • 242 results • page 1 of 9 • next >
9
votes
2
answers
121
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 2 days ago by alexis.groppi • 30
3
votes
2
answers
4.7k
views
2
answers
Tabix With Gff3
gff3 tabix gff written 5.4 years ago by kevin.mohamed1992 • 0 • updated 4 days ago by Biostar ♦♦ 20
10
votes
1
answer
1.4k
views
1
answer
What Is The Correct Specification For Gff3?
gff3 gff written 6.5 years ago by Alex Reynolds ♦ 28k • updated 5 days ago by Biostar ♦♦ 20
7
votes
2
answers
6.0k
views
8 follow
2
answers
How To Merge Gff Files
gff merge written 6.2 years ago by upendrakumar.devisetty • 350 • updated 7 days ago by O.rka • 110
3
votes
2
answers
129
views
2
answers
remove UTR annotations from gff
gff written 8 days ago by rob234king • 580 • updated 8 days ago by Ace • 30
1
vote
1
answer
143
views
1
answer
Distance of promoter from TSS
annotation gff promoter transcription written 26 days ago by ognjen011 • 170 • updated 26 days ago by mrals89 • 20
2
votes
0
answers
104
views
0
answers
Amino acid sequence from CDS information of gff file
cds gff amino acid written 27 days ago by doubleA • 0
1
vote
0
answers
145
views
0
answers
Annotation problem while using Rsubread
gtf annotation gff written 7 weeks ago by gokberk • 30
2
votes
1
answer
137
views
1
answer
how to get gff file bos tau8 from ucsc to import in usegalaxy
gff ucsc htseq-count usegalaxy written 9 weeks ago by Kian • 40
1
vote
0
answers
149
views
0
answers
How to get hold of the gff files for RepeatMAsker annotated human genome
genome gff repaetmasker human written 9 weeks ago by kwicher • 10
1
vote
0
answers
203
views
0
answers
GTF from consensus sequence
gtf fasta gff written 3 months ago by lfiedlerc • 10
2
votes
0
answers
223
views
0
answers
IGB won't open .gff file.
genome gff3 gff igb sequencing written 3 months ago by sj93 • 10
3
votes
1
answer
285
views
1
answer
Number of discovered genes in genome does not correspond with published annotation
ncbi genome gff rna-seq annotation written 4 months ago by P16226 • 0 • updated 4 months ago by kashiff007 • 50
1
vote
0
answers
418
views
0
answers
Filtering GFF annotations file
R gff maker written 5 months ago by alslonik • 90
1
vote
1
answer
397
views
1
answer
Getting GFF annotation from sequence coordinates.
ncbi python gff gene annotation written 5 months ago by jsporter • 60
12
votes
2
answers
514
views
8 follow
2
answers
Visualize multiple GFF files
overlap gff visualization statistics written 10 months ago by Anand Rao • 210 • updated 5 months ago by jrj.healey ♦ 12k
5
votes
1
answer
459
views
1
answer
'CDS' but not 'exon' in GFF
cds gff exon rna-seq written 6 months ago by NielQC • 10 • updated 5 months ago by tdmurphy • 160
5
votes
0
answers
1.7k
views
0
answers
Gff file error in HTSeq-count
gff htseq count written 2.0 years ago by y.gladbach • 0 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
233
views
0
answers
How to get non-redundant set from multiple GFF files
gene gff homology-based gene prediction written 5 months ago by bio_d • 0
1
vote
0
answers
400
views
0
answers
Merging 2 GFF files
gff3 gff combine merge written 6 months ago by bwczech • 70
0
votes
1
answer
1.8k
views
1
answer
How to convert genomic position to transcript position?
gff written 3.3 years ago by biolab • 1.1k • updated 7 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.5k
views
1
answer
Convert bed12 to GFF
bed gff bed12 written 2.3 years ago by cmdcolin • 1.2k
0
votes
0
answers
243
views
0
answers
R bioconductor package `rtracklayer` possible memory leakage
R gff bioconductor memory leakage written 8 months ago by Chirag Parsania • 1.4k
0
votes
1
answer
383
views
1
answer
GFF file multiple features for 1 gene region, how to collapse into 1?
bedtools gff rna-seq written 8 months ago by YOUSEUFS • 10 • updated 8 months ago by Carambakaracho • 1.2k
0
votes
0
answers
306
views
0
answers
Fetched gene from gff file shows similarity to other organism
gff reference written 8 months ago by shubhra.bhattacharya • 120
1
vote
0
answers
372
views
0
answers
Making Zero based coordinate system in gff file
gene gff written 8 months ago by 1234anjalianjali1234 • 30
5
votes
1
answer
543
views
1
answer
How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff parse written 8 months ago by a.rex • 190 • updated 8 months ago by Malcolm.Cook • 1.0k
6
votes
3
answers
1.4k
views
3
answers
GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 16 months ago by arsilan324 • 70 • updated 8 months ago by Shaun Jackman • 420
0
votes
1
answer
3.7k
views
1
answer
GFF3 to GTF
gtf gff written 3.3 years ago by silas008 • 100 • updated 9 months ago by RamRS ♦ 22k
2
votes
1
answer
385
views
5 follow
1
answer
Merging position of all different CDS of a single gene in one line
cds gff gene duplication written 9 months ago by 1234anjalianjali1234 • 30 • updated 9 months ago by rjactonspsfcf • 90
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