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2
votes
1
answer
75
views
1
answer
inclusion or exclusion in gff by list of chromosomes/scaffolds
gff written 4 days ago by Jeffin Rockey • 1.1k
0
votes
0
answers
130
views
0
answers
Parsing GFF with biopython throws error
gff biopython written 29 days ago by Juliofdiaz • 130 • updated 4 days ago by Biostar ♦♦ 20
0
votes
0
answers
49
views
0
answers
How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 4 days ago by T_18 • 40
0
votes
1
answer
1.8k
views
1
answer
GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
gtf tophat gff rna-seq written 5.1 years ago by manekineko • 130 • updated 11 days ago by Biostar ♦♦ 20
0
votes
0
answers
136
views
0
answers
intersection of two GFFs
bedtools gff intersect written 8 weeks ago by BioDH • 0 • updated 4 weeks ago by Biostar ♦♦ 20
0
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0
answers
100
views
0
answers
Tutorial: Sorting GFF/GTF files
gtf gff sort annotation forum tutorial written 4 weeks ago by Juke34 • 4.5k
3
votes
1
answer
122
views
1
answer
Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 6 weeks ago by gabri • 50 • updated 6 weeks ago by Joe ♦ 17k
1
vote
1
answer
4.7k
views
1
answer
How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 3.7 years ago by al-ash • 140 • updated 7 weeks ago by Biostar ♦♦ 20
3
votes
0
answers
114
views
0
answers
Simple genome annotation using transcripts data
fasta annotation gff written 8 weeks ago by liorglic • 320
36
votes
7
answers
20k
views
14 follow
7
answers
How To Convert Blast Results To Gff
gff format blast written 10.4 years ago by Michael Barton • 1.8k • updated 9 weeks ago by Biostar ♦♦ 20
4
votes
3
answers
191
views
3
answers
Bedtools intersect not reporting all overlaps
bedtools bedtools intersect gff artemis bed written 9 weeks ago by jamie.pike • 50
4
votes
2
answers
2.0k
views
2
answers
lowercase fasta coordinates to GFF
lowercase fasta gff written 5.4 years ago by Biomonika (Noolean) ♦ 3.1k • updated 9 weeks ago by bcontreras • 0
1
vote
0
answers
185
views
0
answers
Extract list of gene coordinates from gff file
gene python gff grep awk written 9 weeks ago by the_cowa • 40
0
votes
1
answer
143
views
1
answer
Correct gtf file format (AGAT toolkit)
gtf gff3 gff agat rna-seq written 10 weeks ago by tianshenbio • 50 • updated 10 weeks ago by Juke34 • 4.5k
0
votes
2
answers
239
views
2
answers
IGV memory on Windows
gff igv written 3 months ago by liorglic • 320 • updated 10 weeks ago by Jim Robinson • 280
4
votes
2
answers
176
views
2
answers
Retrieving GO mappings for GOseq analysis with non-native organism
topgo gff gene ontology gaf goseq written 11 weeks ago by thomas.welch • 20
4
votes
1
answer
163
views
1
answer
How to extract sequence of a specific feature in gff
genome assembly gff rna-seq written 11 weeks ago by tianshenbio • 50 • updated 11 weeks ago by Juke34 • 4.5k
0
votes
0
answers
177
views
0
answers
Adding Gene Name attribute to CDS feature ??
genome annotation gff written 11 weeks ago by Mostafa Mahmoud • 0
0
votes
1
answer
131
views
1
answer
BLAST and GFF script to find locations of SNPs
gff blast script snp written 3 months ago by Kiki_01 • 0
0
votes
0
answers
123
views
0
answers
Extract protein sequences or names based on GFF and protein file
gff unix written 3 months ago by T_18 • 40
0
votes
0
answers
81
views
0
answers
Blast2gff index issue
gff blast2gff blastn index written 3 months ago by Begonia_pavonina • 20
1
vote
1
answer
134
views
1
answer
Extract ID and go terms from annotation gff file, one go term per line
go term gff written 3 months ago by Cecelia • 20 • updated 3 months ago by JC ♦ 11k
3
votes
1
answer
178
views
1
answer
Extract EXON fasta from a GFF3 annotation and reference genome
genome fasta gff exon gff2fasta written 3 months ago by marcelolaia • 10
5
votes
2
answers
177
views
2
answers
Ensembl and Gene Prediction Tools output CDS' not divisible by 3
cds gff orf written 4 months ago by NickJD • 0 • updated 4 months ago by ATpoint ♦ 36k
0
votes
0
answers
192
views
0
answers
Average length of each exon and intron
gtf bed gff next-gen bedtools written 4 months ago by kashiff007 • 130
76
votes
3
answers
63k
views
28 follow
3
answers
Convertion Of Gff3 To Gtf
gtf gff written 8.2 years ago by geek_y ♦ 11k • updated 5 months ago by Juke34 • 4.5k
4
votes
0
answers
915
views
0
answers
Forum: Converting GFF to GTF
gtf converter gff forum conversion written 5 months ago by Juke34 • 4.5k • updated 5 months ago by JamesJonpo • 0
14
votes
1
answer
976
views
6 follow
1
answer
Blog: Review of the GFF and GTF formats (GFF / GFF1 / GFF2 / GFF2.5 / GFF3 / GTF / GTF2 / GTF2.1 / GTF2.2 / ...)
genome gene gff blog gtf written 17 months ago by Juke34 • 4.5k
1
vote
1
answer
164
views
1
answer
Problem using SED for change IDs in gff file
gff sed written 5 months ago by luciabilbao03 • 0 • updated 5 months ago by RamRS ♦ 28k
2
votes
0
answers
127
views
0
answers
Estimate distances to closest gene from VCF and GFF files
vcf gff next-gen written 5 months ago by elcortegano • 50
<prev • 283 results • page 1 of 10 • next >
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