ggprofiler2 Posts

C: Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis by camillab. • 40
How would write the loop of the logistic regression model if instead of "Schizophrenia" (so the t...
C: get coordinates for a list of genes by WouterDeCoster ♦ 45k
> Tried to write a python script, but too many iterations...too slow. If you show us the code...
C: How to draw survival curve marked at one censoring time for each patient by German.M.Demidov • 1.9k
Kaplan-Meier curve shows the time until the event - this event can't be observed multiple times. ...
C: get coordinates for a list of genes by cpad0112 ♦ 15k
Try biomart in R and bioservices in python
C: metagenomics- read based diversity analysis by pdhrati02 • 0
Hi @antonioggsousa, I am using estimateR function in the vegan package in R for estimating vario...
C: Downloading 1000genome phase 3 data in 38 build by MatthewP • 880
I download from ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/release...
C: Plink1.07 generate ERRORs when reading covaries by zx8754 ♦ 9.9k
Ensure your covar file is per expected format, I can see 3 `tabs` after the second column, meanin...
C: Facing issue while installing Bio::SeqIO module by 5heikki ♦ 9.3k
You could install bioperl with `apt`, no? Alternatively, what does the log file say?
C: Is there other IDE like R studio working on the linux? by 5heikki ♦ 9.3k
There's always Emacs..
A: GATK issue in running Mutect2 by spriyansh29 • 30
If you are running the Mutect2 with a tumour-matched normal setting, you need to explicitly suppl...
C: Enrichment Analysis, Clustering and Scoring with pathfindR by egeulgen • 1.1k
Hey, thank you for your kind words. You're correct, if you provide the complete (not filtered) di...
A: Is there other IDE like R studio working on the linux? by shangguandong1996 • 10
I think https://github.com/Ikuyadeu/vscode-R may be most suitable for me :)

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