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Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2

gisaid forum written 10 days ago by Istvan Albert ♦♦ 83k

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Is it possible to download the full EpiCov database from GISAID?

genome gisaid database epicov written 9 days ago by dgarcia54 • 0 • updated 7 days ago by Michael • 140

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nCoV-2019 GISAID Genomes under an embargo?

genome gisaid ncov-2019 coronavirus written 8 weeks ago by Hernán • 140 • updated 7 weeks ago by genomax ♦ 80k

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Recent Replies

C: Error in WGCNA packages installation in R? by harshraje19 • 20
Yes. It is working for me. Thank you very much
C: Error in WGCNA packages installation in R? by devarora • 120
There is a trick that worked for me when I got such error. I installed all the packages manually ...
C: Error in WGCNA packages installation in R? by Fatima • 560
Hi > ‘/tmp/Rtmp7SFM5k/downloaded_packages’ Installation path not writeable, Do you have permi...
C: Error in WGCNA packages installation in R? by mbk0asis • 510
Type 'sessionInfo()', and post the output here. That could be helpful for experts (not me) to sol...
C: Problem starting and running Gmaj (MAF file viewer and manipulator) by cssulliv • 10
Hi, Did this ever get resolved? I have the same problem and am trying to figure out how else to ...
C: transcription factor from list of genes by dsull • 990
EnrichR might be a good start: https://amp.pharm.mssm.edu/Enrichr/
A: ERROR: You must specify a valid interval for imputation using the -int argument, by Kevin Blighe ♦ 56k
Hi, I gave the answer in the other thread, regarding the pre-phasing of data using SHAPEIT2. I c...
A: From a list of RefSeq protein IDs to assembly accessions by genomax ♦ 80k
`WP*` records represents a single, non-redundant, protein sequence which may be annotated **on m...
A: Conversion of Ensembl Gene Ids to Uniprot Ids by Kevin Blighe ♦ 56k
To answer the specific question and build upon Genomax's comment, you can map these via *biomaRt...
C: gene set filter/selection for training ab initio annotation tools by victaphanta • 0
Hi Jacques, Thank you for sharing your protocol. I just wanted to check with you step 5. Shoul...
A: newbie: how to compare "sameness" of two samples using Illumina AB allele format by Kevin Blighe ♦ 56k
You could just aim to do an identity-by-state analysis. Kevin
C: Fastq Splitter vs Fastq de-lancer on Galaxy by genomax ♦ 80k
Because HISAT2 does not accept interleaved reads you will have to separate read 1 and 2 into sepa...

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