gisaid Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

views

answers

How to subsample SARS-CoV-2 dataset with limited computational resources?

genome gisaid ram subsample sars-cov-2 written 12 days ago by fhsantanna • 520

168

votes

answers

9.9k

views

34 follow

answers

Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2

gisaid forum written 11 months ago by Istvan Albert ♦♦ 86k • updated 16 days ago by colindaven • 2.6k

votes

answers

3.8k

views

10 follow

answers

Is it possible to download the full EpiCov database from GISAID?

genome gisaid database epicov written 11 months ago by dgarcia54 • 20 • updated 11 months ago by 5heikki ♦ 9.3k

votes

answer

1.1k

views

answer

nCoV-2019 GISAID Genomes under an embargo?

genome gisaid ncov-2019 coronavirus written 13 months ago by Hernán • 200 • updated 12 months ago by GenoMax ♦ 96k

Recent Votes

Recent Locations • All »

Recent Awards • All »

Guru to lessismore • 1000
Popular Question to German.M.Demidov • 1.9k
Good Answer to Kevin Blighe ♦ 71k
Appreciated to i.sudbery ♦ 11k
Scholar to GenoMax ♦ 96k
Appreciated to Jeremy Leipzig ♦ 19k

Recent Replies

A: What batch correction was applied to pan-Cancer mRNA expression data? by chengdu_1982 • 0
whether the exp matrix log transformed?
A: PanCancerAtlas RNA-SeqV2 (RSEM) file contains negative values by chengdu_1982 • 0
whether the exp matrix log transformed?
C: How to get REF and ALT alleles from a genotype data? by biotechnology415 • 0
AA and TT are SNPs in my sample.
C: How to get REF and ALT alleles from a genotype data? by biotechnology415 • 0
Thanks, I understood
C: Alignment Error in BWA: The sequence "lcl|" was not found by GenoMax ♦ 96k
Just to be sure you downloaded `fasta` format of the genome sequence correct? Do you just see onl...
C: Search all SRA data for sequence? Raw reads only by GenoMax ♦ 96k
While not quite the same thing you can do a sequence search against EBI's metagenomic dataset `MG...
C: Search all SRA data for sequence? Raw reads only by seidel ♦ 7.4k
Could you take the statistical sampling approach by considering all entries, and simply pick rand...
A: Search all SRA data for sequence? Raw reads only by GenoMax ♦ 96k
> I don't mean an individual entry but rather all raw illumina reads > submitted to NCBI. ...
A: rna-seq/DEseq2 analysis - is it a linear combination problem? by ATpoint ♦ 46k
> I thought about doing ~ sample_time + treatment but I am thinking that I might have problem ...
C: Which normalization method/pipeline is best to generate normalized counts to mak by ATpoint ♦ 46k
Do the different datasets contain roughly the same celltypes or is this rather a mishmash of expe...
A: Loading a dataset via acession number by ATpoint ♦ 46k
This is RNA-seq, not microarrays which GEOquery assumes, so it is expected that it produces no ou...
C: NGS Data storage solutions for small organisations or big labs by A. Domingues • 2.4k
That was pretty much my low-tech solution, but I was just wondering of there was better way of go...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1041 users visited in the last hour