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answer

create null sequences with gkmSVM for mouse genome mm10

dna gkmsvm R written 2.1 years ago by fusion.slope • 240 • updated 8 months ago by sarahmcclymont • 20

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Recent Replies

C: blast alignemnt query coverage by Karma • 300
If that is the case, can you remove those `unwanted comments` from the sections
C: cellranger count error "Your reference does not contain the expected files, or t by yjk122123 • 0
It looks to me that you downloaed the VDJ reference instead of the reference for GEX data? Since ...
C: allele specific expression at gene level by qliang2016 • 0
Thanks. I read the paper and actually, it also did not try to avoid multiple counting. Also it se...
A: Getting alignments with lower scores on Biopython by Mensur Dlakic • 8.1k
At the end of [**this paper**][1] there is a short program for global alignment by dynamic progra...
C: GATK4 VariantRecalibrator resource error by svp • 280
when you referring to latest, it would be nice to put the version name also
A: GATK4 VariantRecalibrator resource error by dare_devil • 610
In the latest version of GATK, there is a slight change in the syntax. You need to add `:` after ...
C: Residue Contact Map - Program And/Or Database by Wayne • 400
I made some scripts to parse that text file you point out and make it a nice form for working wit...
C: Getting alignments with lower scores on Biopython by trinityduke100 • 0
Align.PairwiseAligner() implements the Needleman-Wunsch, Smith-Waterman, Gotoh, and Waterman-Smi...
C: STAR --quantMode GeneCounts vs HTSeq-count by h.mon ♦ 32k
Just go ahead with STAR counts.
C: PSIPRED, how to install and make it work? by karla.penaguerra • 0
Hello :) may I know the commands you ended up using to run psipred??
C: How to avoid building millions of BWA indices? by Pierre Lindenbaum ♦ 132k
it's not clear to me what you mean with "and then against the genome and merge the BAM files toge...
A: How to extract genes from goana by Gordon Smyth • 2.1k
This has to be done for each GO term individually because there might be 100s or 1000s of genes a...

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