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create null sequences with gkmSVM for mouse genome mm10

dna gkmsvm R written 13 months ago by fusion.slope • 210

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McGill University, 2 minutes ago
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Good Answer to chrchang523 ♦ 6.3k
Scholar to h.mon ♦ 29k
Scholar to genomax ♦ 76k
Teacher to ATpoint ♦ 28k
Scholar to Pierre Lindenbaum ♦ 125k
Scholar to Pierre Lindenbaum ♦ 125k

Recent Replies

C: extract genes and functions +/-50kb around a SNP by reza.jabal • 350
Hi Pierre, Would you please update your answer to reflect the current dbSNP version?
C: Whole-genome percentile values in bigWig files by rachel • 30
I just wanted to say that your first option worked beautifully! (I already had everything set up ...
A: GATK CNV Pipeline not plotting all discovered segments - PlotModeledSegments by taylor.falk3 • 0
It turns out that the plotting stops at 4, so I edited the R script to accommodate for the larges...
C: Pheatmap or Heatmap3 ? by frcamacho • 130
I used to use pheatmap, but I agree with @RamRS. ComplexHeatmap brought R heatmaps a needed makeo...
C: prinseq and sickle by frcamacho • 130
Can you please attach the conda commands you used to run the installation? For example; > `c...
C: Rename many files to unique names in different directories by cpad0112 ♦ 12k
with gnu-parallel: find . -type f -name "contigs.fasta" -printf '%P\n' | parallel --dry...
C: Rename many files to unique names in different directories by genomax ♦ 76k
For questions such as this which are more unix focused you should always check StackExchange/Stac...
A: Rename many files to unique names in different directories by JC ♦ 9.3k
you can use Bash for this: #!/bin/bash for DIR in . do if [ -e "$DIR/co...
C: wrong version of formatdb was used to make database by Mensur Dlakic • 2.9k
I am not an expert on BLAST error messages, but it could be that you don't have enough memory. I ...
A: Generating consensus sequence from bam file by vsingh • 0
1) Map short reads against reference gene sequence # Create bowtie2 database bowtie2-build REFERE...
C: Generating consensus sequence from bam file by vsingh • 0
see below my answer thanks
A: Retrieve "Abstract" of SRP accession from SRA by genomax ♦ 76k
Using [Entrezdirect][1] : $ esearch -db sra -query "SRP241771" | esummary -format native | x...

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