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<prev • 25 results • page 1 of 1 • next >
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Extrapolating allele frequencies from gnomad
allele frequency gnomad written 9 days ago by oakhamwolf • 0
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103
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How to calculate "expected loss-of-function variants" for a gene
lof o/e gnomad written 9 weeks ago by Shicheng Guo • 7.7k • updated 13 days ago by Biostar ♦♦ 20
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131
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ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
annotation vep gnomad ensembl written 5 weeks ago by c.clarido • 50
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98
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Number of samples with rare mutation per gene in gnomAD
mutation gnomad written 7 weeks ago by Nicolas Rosewick ♦ 8.0k
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1
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135
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How to predict sample ethnicty from a VCF using 1000G or gnomAD ?
vcf 1000g ethnicity snp gnomad written 7 weeks ago by Nicolas Rosewick ♦ 8.0k • updated 7 weeks ago by WouterDeCoster ♦ 40k
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1
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119
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What are valid VCF symbolic alternate alleles for structural variants?
vcf 1000 genomes specification gnomad sv written 7 weeks ago by Garrett Stevens • 0 • updated 7 weeks ago by John Marshall ♦ 1.7k
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310
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structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
vcf specification gnomad structural variant sv written 7 weeks ago by Pierre Lindenbaum ♦ 122k • updated 7 weeks ago by John Marshall ♦ 1.7k
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1
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224
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Can't find position in GnomAD VCF
vcf snv gnomad written 3 months ago by bzg • 40 • updated 3 months ago by zx8754 ♦ 7.9k
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214
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1
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little discrepancies gnomAD DB vs. website
frequency genomes gnomad exomes variants written 3 months ago by cocchi.e89 • 30 • updated 3 months ago by tpoterba • 50
1
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1
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303
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Extracting summary statistics from gnomAD VCF file
vcf allele frequency gnomad sfs written 3 months ago by lom • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 122k
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3
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309
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3
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gnomAD: query utilitites
gnomad written 4 months ago by bsmith030465 • 150 • updated 4 months ago by Garan • 580
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1
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259
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table to convert RS names to CHR-POS-REF-ALT (es GnomAD)
rs nomeclature variant gnomad names written 4 months ago by cocchi.e89 • 30
2
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377
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Extract allele count from gnomAD using R
R gnomad written 5 months ago by Nicolas Rosewick ♦ 8.0k • updated 5 months ago by zx8754 ♦ 7.9k
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286
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Extract gnomad AF for specific position with R
R allele frequency gnomad af annotation written 5 months ago by Nicolas Rosewick ♦ 8.0k
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478
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gnomAD and Bravo to download loss-of-function annotation
gnomad loss-of-function bravo written 9 months ago by Shicheng Guo • 7.7k • updated 5 months ago by Biostar ♦♦ 20
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5 follow
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How to extract gnomad exomes bgz
bgz gnomad written 15 months ago by stanedav • 40 • updated 6 months ago by Shicheng Guo • 7.7k
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466
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gnomaAD exome and genome AF differences
exome genome gnomad written 7 months ago by cocchi.e89 • 30 • updated 7 months ago by Pierre Lindenbaum ♦ 122k
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255
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How can view haplotype from GnomAD
haplotype gnomad haploview written 7 months ago by sacha • 1.8k
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807
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Using VEP to get gnomAD frequencies
annotation frequency vep gnomad allele frequency written 7 months ago by brett.spurrier • 20 • updated 7 months ago by Emily_Ensembl ♦ 18k
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546
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Losing info fields using bcftools merge
vcf merge bcftools gnomad written 12 months ago by dayne.filer • 0
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414
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1
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Fill a VCF record field that is partially annotated
vcf vcfanno gnomad snp written 14 months ago by joangibert14 • 0 • updated 14 months ago by Pierre Lindenbaum ♦ 122k
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Difference in allele count between ExAC and gnomad exomes
exome exac gnomad written 17 months ago by dolevrahat • 10 • updated 17 months ago by Kevin Blighe ♦ 46k
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gnomAD variant frequencies by study
tcga gnomad exac written 17 months ago by igor ♦ 8.1k
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News: The genome Aggregation Database (gnomAD)
news gnomad written 2.5 years ago by Pierre Lindenbaum ♦ 122k
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genotype frequency data
frequency genotype gnomad written 2.7 years ago by aidpranculis • 0 • updated 2.7 years ago by Ron • 970
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