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<prev • 53 results • page 1 of 2 • next >
1
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229
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Formula of LOEUF: loss-of-function observed/expected upper bound fraction
plof gnomad loeuf constraint gevir written 6 months ago by Shicheng Guo • 8.5k • updated 5 weeks ago by darphd • 10
2
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1
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159
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1
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Calculating minor allele frequency for GnomAD VCF file
genome gnomad written 8 weeks ago by Jamie Watson • 0 • updated 8 weeks ago by Jeremy Leipzig ♦ 19k
6
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1
answer
999
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1
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How to convert vcf.bgz to vcf.gz?
vcf bgz gz gnomad written 12 months ago by ja4123 • 0 • updated 9 weeks ago by Biostar ♦♦ 20
7
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1
answer
259
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1
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Why is gnomAD AF vs gnomAD exome AF so different?
wes next-gen gnomad written 10 weeks ago by nub6 • 20 • updated 10 weeks ago by Jorge Amigo ♦ 12k
2
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1
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171
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1
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Extracting FILTER field from gnomAD vcf file
vcf pyvcf gnomad written 11 weeks ago by Damianos P. Melidis • 30
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0
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292
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0
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VEP - gnomAD v3 (hg38) annotation AF
vep hg38 gnomad annotation written 4 months ago by cocchi.e89 • 120 • updated 3 months ago by Biostar ♦♦ 20
2
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1
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296
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1
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Gnomad genome vs Gnomad exom (extremely rare Ref case)
gnomad snp written 4 months ago by Eugene A • 90
4
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1
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390
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1
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Quickly get allele frequencies from Gnomad
allele freq ngs gnomad written 5 months ago by Floydian_slip • 140
3
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1
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473
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1
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How to change variant IDs in plink files?
id plink gnomad written 6 months ago by kraincimages • 10 • updated 6 months ago by zx8754 ♦ 9.9k
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5 follow
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gnomAD: query utilitites
gnomad written 21 months ago by bsmith030465 • 150 • updated 6 months ago by r-ninja • 0
0
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1
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428
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1
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[GNOMAD v2]How to count the number of heterozygous individuals
genome heterozygous individuals gnomad snp written 8 months ago by leeray00151 • 10 • updated 6 months ago by scrap • 0
0
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0
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183
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0
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ANNOVAR issue annotating vcf
annover variant gnomad written 7 months ago by brismiller • 40
3
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1
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240
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1
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gnomAD Structural Variants pipeline usage
sv pipeline gnomad talkowski-lab written 7 months ago by cocchi.e89 • 120
2
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1
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220
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1
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gnoMAD specific mutation allele position in gnoMAD
gnomad written 8 months ago by dshdixit • 10 • updated 8 months ago by finswimmer ♦ 14k
0
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1
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370
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1
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VEP and gnomAD AF inconsistencies
ensembl vep gnomad af dbnsfp written 8 months ago by cocchi.e89 • 120 • updated 8 months ago by Ben_Ensembl • 1.6k
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0
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177
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0
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gnomAD reports variants with "NA" allele count and allele frequency
vcf snps gnomad written 8 months ago by j.lunger18 • 10
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0
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245
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0
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Download non-cancer subset from gnomAD
vcf variants snv mutations gnomad written 9 months ago by j.lunger18 • 10
3
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1
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524
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1
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vcfanno: issues to annotate VCF with gnomAD r3.0
vcfanno gnomad written 10 months ago by Nicolas Rosewick ♦ 9.3k • updated 10 months ago by _r_am ♦ 32k
2
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1
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212
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1
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LOFTEE citation/ publication
ensembl loftee gnomad citation written 10 months ago by brismiller • 40 • updated 10 months ago by Kevin Blighe ♦ 69k
3
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2
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345
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2
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VEP not returning gnomAD AF
vep gnomad written 11 months ago by michal.inbar • 0 • updated 11 months ago by Ben_Ensembl • 1.6k
0
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512
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Does GNOMAD use all LOFTEE LoF filters?
ensembl lof vep gnomad loftee written 11 months ago by brismiller • 40 • updated 11 months ago by _r_am ♦ 32k
5
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1
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241
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1
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"gnomad_allele" field in new VEP
vep gnomad written 12 months ago by ori.inbar • 10 • updated 12 months ago by Emily_Ensembl ♦ 21k
1
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258
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Any changes to the frequencies of gnomAD v2.1 liftover ?
hg38 gnomad liftovert hg19 written 12 months ago by δΉ™ • 180
2
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1
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231
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1
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sequencing coverage information: Trying to understand the data format
coverage gnomad written 12 months ago by mito • 10
2
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1
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356
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1
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GNOMAD exome vcf field missing? number of hemizygous individuals
exome hemizygous gnomad written 12 months ago by brismiller • 40 • updated 12 months ago by rbagnall • 1.7k
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Extract gnomad AF for specific position and REF/ALT allele with R
R allele frequency gnomad af annotation written 22 months ago by Nicolas Rosewick ♦ 9.3k
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3
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7 follow
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How to extract gnomad exomes bgz
bgz gnomad written 2.7 years ago by stanedav • 50 • updated 14 months ago by janapet • 0
2
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0
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444
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0
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Extract variants from genomic range from gnomAD GRCh38
genome exome gnomad variants written 15 months ago by j.lunger18 • 10
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1
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772
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1
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Missing SNP in gnomAD hg38 liftover vcfs
gnomad snp written 16 months ago by Nicolas Rosewick ♦ 9.3k
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985
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Import VCF from GnomAD
vcf path gnomad written 16 months ago by j.lunger18 • 10 • updated 16 months ago by Brice Sarver • 3.6k
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