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Fill a VCF record field that is partially annotated

vcf vcfanno gnomad snp written 12 days ago by joangibert14 • 0 • updated 12 days ago by Pierre Lindenbaum ♦ 108k

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263

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How to extract gnomad exomes bgz

bgz gnomad written 8 weeks ago by stanedav • 20 • updated 8 weeks ago by Pierre Lindenbaum ♦ 108k

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348

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Difference in allele count between ExAC and gnomad exomes

exome exac gnomad written 3 months ago by dolevrahat • 10 • updated 3 months ago by Kevin Blighe ♦ 22k

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222

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gnomAD variant frequencies by study

tcga gnomad exac written 3 months ago by igor ♦ 6.2k

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1.1k

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News: The genome Aggregation Database (gnomAD)

news gnomad written 16 months ago by Pierre Lindenbaum ♦ 108k

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528

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genotype frequency data

frequency genotype gnomad written 19 months ago by aidpranculis • 0 • updated 19 months ago by Ron • 760

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Recent Replies

A: Relationship between sequencing lane and ngs dataset by genomax ♦ 50k
> If you have used adapters containing barcode sequences (that identify > each patient), yo...
C: Mapping paired-end reads to a draft genome using HISAT2 by genomax ♦ 50k
See if this helps: https://askubuntu.com/questions/731579/problem-in-renaming-the-partition-and-o...
C: Filter sam/bam files by ramesh.8v • 190
Looks like a very neat solution :) Let me try!
C: Filter sam/bam files by Eric Lim • 600
https://www.biostars.org/p/254790/ ?
A: Filter sam/bam files by Pierre Lindenbaum ♦ 108k
your reads are single end ? samtools view -F 4 in1.bam | cut -f 1 | sort | uniq > r1.txt ...
C: Filter sam/bam files by ramesh.8v • 190
Thanks for the suggestion! Yes, they were mapped separately. I will look into BBTools.
C: WGCNA network with condition and normal samples by saptarathideb • 0
Thanks a lot for the answer, Just one more thing if you can kindly answer:- If WGCNA calculates...
C: Filter sam/bam files by h.mon ♦ 15k
Were the reads mapped to each genome separately? I don't think there is a tool that does what you...
A: Could somebody suggest free pathway visualization tool for omics data from plant by bigmawen • 240
Pathview maps, integrates and renders a wide variety of biological data on relevant pathway graph...
C: fastq- dump error by grant.hovhannisyan • 890
In my experience, the fastest and the most secure (without connection interruptions) is to use pr...
A: Demultiplex of V4 reads by h.mon ♦ 15k
You have 0.01% of 489 bp reads, compared to only 249 bp reads. If you consider the interval from,...
C: Mapping paired-end reads to a draft genome using HISAT2 by Farbod • 3.1k
I know that this is not a bioinformatic question but do you have any idea how I can change the na...

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