gosemsim Posts

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Gene set size effect on Gene ontology Semantic Similarity score

R semanticsimilarity gosemsim go written 5 months ago by ash3m21 • 0 • updated 5 months ago by Guangchuang Yu • 1.5k

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590

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Tool: GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

tool gosemsim R bioconductor semantic go written 11 months ago by Guangchuang Yu • 1.5k

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478

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R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'

R mgenesim gosemsim written 14 months ago by ' • 150 • updated 14 months ago by Jean-Karim Heriche ♦ 11k

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Bioconductor GOSemSim problem for yeast

semantic similarities gosemsim yeast genesim written 2.4 years ago by mahdijalili • 20

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Recent Replies

C: Reads mapping to mir21a in mir-21 Knock-Out mice by gkuffel22 • 20
Pierre, Did you get a chance to look at the SAM record?
C: Paired-read alignment length from BAM/SAM file by genomax ♦ 29k
Sorry! Post above changed to reflect right place.
C: why spectral clustering show a warning? by aouichechaimaa • 70
@Rodrigo, what I have to do so? any suggestions!
C: CNVnator error :Can't determine length for 'chr1'. No reference genome specified by chevivien • 50
It's running well now. Thanks
C: How and what are the steps for performing RNAseq Time point analysis 3 biologica by Michael Dondrup ♦ 42k
Another comment: are you sure that your protocol is not strand specific? `-s no -r pos -t exon -f...
C: Paired-read alignment length from BAM/SAM file by Soumitra Pal • 10
But it is a potential bug in BWA not samtools.
C: Paired-read alignment length from BAM/SAM file by Soumitra Pal • 10
Sorry for not trying this earlier. Apparently, 'samtools stats' just uses the TLEN field, as seen...
C: why spectral clustering show a warning? by Rodrigo • 20
Apparently your graph is not connected and IMO the warning is because spectral algorithms for lay...
C: Mapsembler2 targeted micro assembly and visualization of the local assembly grap by pierre.peterlongo • 600
Hey, Thanks for your suggestion. I may do the modification. However, I'm afraid that mapsembler ...
C: How and what are the steps for performing RNAseq Time point analysis 3 biologica by Michael Dondrup ♦ 42k
How does STAR distinguish and group biological and technical replicates? This is an interesting ...
C: Using trimmomatic on multiple paired-end read files by Safa.A • 0
Hi, Thanks for you python script. I am trying to run this script but I have it not running or giv...
C: retrieve genomic coordinate on mRNA by Istvan Albert ♦♦ 71k
What are you looking to obtain? As you point out a transcript is built from several different gen...