gosemsim Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: gosemsim • reset

or Classic search

vote

answer

354

views

answer

Gene set size effect on Gene ontology Semantic Similarity score

R semanticsimilarity gosemsim go written 7 months ago by ash3m21 • 0 • updated 7 months ago by Guangchuang Yu • 1.6k

votes

answers

635

views

answers

Tool: GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

tool gosemsim R bioconductor semantic go written 13 months ago by Guangchuang Yu • 1.6k

votes

answer

520

views

answer

R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'

R mgenesim gosemsim written 16 months ago by ' • 150 • updated 16 months ago by Jean-Karim Heriche ♦ 12k

vote

answer

822

views

answer

Bioconductor GOSemSim problem for yeast

semantic similarities gosemsim yeast genesim written 2.5 years ago by mahdijalili • 20

Recent Votes

Recent Locations • All »

USA/Newark/New Jersey Institute of Technology, just now
United States, just now
Brasilia, Brazil, 2 minutes ago
United Kingdom, 3 minutes ago
United States, 9 minutes ago

Recent Awards • All »

Scholar to WouterDeCoster ♦ 20k
Scholar to geek_y ♦ 7.7k
Popular Question to Michael Dondrup ♦ 42k
Scholar to Satyajeet • 740
Teacher to Alex Reynolds ♦ 20k
Scholar to Alex Reynolds ♦ 20k

Recent Replies

C: ABySS run problems by Anand Rao • 70
Thank you benv, I will look into syntax for MPI jobs in general on our HPCC, and specifically for...
C: Bedtools merge only part of feature that overlaps, not whole feature by Alex Reynolds ♦ 20k
Or you could just use BEDOPS `gtf2bed`: $ awk '$3 == "gene"' Homo_sapiens.GRCh37.75.gtf | gt...
C: Working example for VCF visualization in Circos by WouterDeCoster ♦ 20k
Thanks for sharing the solution, but there is no need to close the thread.
C: Working example for VCF visualization in Circos by Genebow • 80
I close this problem as I see the solution from Circos tutorial. The VCF file needs to be pars...
C: Any implementation of the edgeR in python by genomax ♦ 32k
[Here][1]. Please use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads...
A: Any implementation of the edgeR in python by Hamid • 10
Thanks man :) Ok, so where is that documentation?
C: Any implementation of the edgeR in python by WouterDeCoster ♦ 20k
> I'm not comfortable with R. Eh, does one ever get comfortable with R? Anyway, as far as I ...
C: samtools: error while loading shared libraries: libbz2.so.1.0: cannot open share by Eric Kay • 0
I had a similar problem and this worked for me. Thanks.
C: Creating Interactive Volcano Plots with R and Plot.ly by steve • 790
1. Are you referring to the hard-coded black arrows on the plot? In this example, that is coming ...
C: sequence in different line by WouterDeCoster ♦ 20k
Exactly ;-) [just some slight Friday night trolling]
C: sequence in different line by Ram ♦ 12k
So, a different delimiter?
C: How do I retrieve a specific region of a chromosome from a local blast database by b10hazard • 0
Ah, you're correct, that was it. The fasta has chr1 as the record ID. It works now. Thanks!

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 490 users visited in the last hour