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Gene set size effect on Gene ontology Semantic Similarity score

R semanticsimilarity gosemsim go written 15 months ago by ash3m21 • 0 • updated 15 months ago by Guangchuang Yu • 1.8k

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Tool: GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

tool gosemsim R bioconductor semantic go written 21 months ago by Guangchuang Yu • 1.8k

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R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'

R mgenesim gosemsim written 2.0 years ago by ' • 160 • updated 2.0 years ago by Jean-Karim Heriche ♦ 15k

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Bioconductor GOSemSim problem for yeast

semantic similarities gosemsim yeast genesim written 3.2 years ago by mahdijalili • 20

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Recent Replies

A: Making reference fasta file from aligned sam file or bed file by d-cameron • 1.5k
> Is that right approach becuase many amplicons have different locations on same chromosome an...
C: Poor Output from Spades with High Coverage Input Data by h.mon ♦ 13k
Is this DNAseq or RNAseq?
C: strand information for SNPs from VCF file (convert into IMPUTE format) by miaowzai • 40
I found a tool to do this: https://github.com/biocore-ntnu/snpflip
C: Sample outlier detection in DESeq2 by genomax ♦ 46k
For future reference : https://www.biostars.org/p/309884/
C: Using rna-STAR on Amazon EC2 instance by marypthomas88 • 0
Thanks for the feedback. Yes, our pseudo-genome seems small and we assumed we could load this in ...
C: Poor Output from Spades with High Coverage Input Data by genomax ♦ 46k
Not answering your question but you may want to give `tadpole.sh` from [BBMap suite][1] a try. It...
C: Making reference fasta file from aligned sam file or bed file by genomax ♦ 46k
Check `FastaAlternateReferenceMaker` ([part of GATK toolkit][1]) for generating reference. [1...
C: Graduate student going into Bioinformatics looking for a new personal laptop. Ma by genomax ♦ 46k
Rather than a VM you should use [Linux subsystem for Win 10][1]. It is free and provides a native...
C: Count the number of reads for multiple genomic locations on different (not all) by vkgaur25 • 0
This is what happens after no sleep at all. I am so stupid. Thanks a lot @genomax
A: Graduate student going into Bioinformatics looking for a new personal laptop. Ma by marypthomas88 • 0
I am new to bioinformatics; I come from a unix computational science background. When I work, I t...
C: UBERON. A way to retrieve relationships? by Solowars • 30
Hi Kevin, tudo bom? I was thinking of an automatic way to extract the hierarchy of a list of iden...
C: UBERON. A way to retrieve relationships? by Kevin Blighe ♦ 17k
Boa noite, conheço bem a Porto Alegre. You just want to extract the hierarchy of a specific UBERO...

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